KEGG   Pseudoalteromonas espejiana: PESP_a2987
Entry
PESP_a2987        CDS       T04989                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
pea  Pseudoalteromonas espejiana
Brite
KEGG Orthology (KO) [BR:pea00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pea03032]
    PESP_a2987 (topA)
   03400 DNA repair and recombination proteins [BR:pea03400]
    PESP_a2987 (topA)
Enzymes [BR:pea01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     PESP_a2987 (topA)
DNA replication proteins [BR:pea03032]
 Prokaryotic type
  DNA Topoisomerases
   PESP_a2987 (topA)
DNA repair and recombination proteins [BR:pea03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      PESP_a2987 (topA)
SSDB
Motif
Pfam: Topoisom_I Top1B_N_bact N_formyltrans_C
Other DBs
NCBI-ProteinID: ASM50868
Position
I:complement(2893344..2894321)
AA seq 325 aa
MKLIYVDDNLPGISRKLKRKSWLYYDPIGKQIKEQEVIDRLNALAFPPAYKNAWFCPEEN
GHILATGYDSKGRKQYRYHPEFRAQQEAKKYQACGVFGNKLPLLRARLETDLQGDELNVE
RTLAAVVRLMDLGALRVGNERNVKQNKSFGATTLRTRHAKLTGKNIQLQYRAKSGKEREV
NITDRVLSHVIKDLQDLPGQHLFQYISDGERTNVTSSEINQYIQQIMGEEFSAKHFRTWR
ASVIAFKQLFKAKGALTLKSMLDSVSEQLGNTPAIARKSYVHPDLIALCKQDEETQTAWR
ETLSLPRKTKYLSRFERGFLAFLND
NT seq 978 nt   +upstreamnt  +downstreamnt
atgaagctaatttatgttgatgacaacttacccggtatatcccgaaaacttaagcgtaaa
agctggctttactacgaccctataggtaagcaaataaaagagcaggaggttattgataga
ttaaacgccttggcatttccacccgcatataaaaatgcctggttttgccctgaagaaaac
ggccatattttagcaactggttacgatagtaaagggcgaaagcagtatcgttatcaccct
gagtttagagcgcagcaagaggctaaaaaatatcaagcctgtggtgtgtttggaaataaa
ttaccccttttacgtgcacgcttagaaaccgatttacagggcgatgaacttaatgttgaa
cgcactttagctgcagttgttagacttatggatttaggagcgctgcgcgttggaaatgag
cgtaatgtaaaacaaaacaaaagttttggcgccaccacgctgcgtactcgccatgcaaag
ctaacaggtaaaaatatacagctacaataccgtgctaaatcgggtaaagagcgcgaggta
aatattactgatagggtattgagccatgtaattaaagacttacaagacctacctggtcag
cacttgtttcaatacataagtgatggtgagcgtactaatgtaacttccagtgaaattaat
caatacattcaacaaataatgggcgaggaatttagtgcaaagcactttagaacatggcgc
gccagtgttatcgcttttaaacagctttttaaagcaaaaggggcgcttacgttaaaaagt
atgctcgatagcgtgtctgagcagttaggtaatactccggcaattgcgcgtaagtcatat
gtacaccctgatttaatcgcactttgtaagcaagatgaagagactcaaactgcatggcga
gaaacgctctcattaccacgaaaaacaaaataccttagtcgttttgaacgaggcttttta
gcctttttaaacgattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system