KEGG T01465: SAR11G3

Candidatus Pelagibacter sp. IMCC9063: SAR11G3_01230

Entry

SAR11G3_01230 CDS T01465

Definition

DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)

Orthology

K03043

DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]

Organism

pel Candidatus Pelagibacter sp. IMCC9063

Pathway

pel00230	Purine metabolism
pel00240	Pyrimidine metabolism
pel01100	Metabolic pathways
pel03020	RNA polymerase

Module

pel_M00183

RNA polymerase, bacteria

Class

Metabolism; Nucleotide metabolism; Purine metabolism [PATH:pel00230]
Metabolism; Nucleotide metabolism; Pyrimidine metabolism [PATH:pel00240]
Genetic Information Processing; Transcription; RNA polymerase [PATH:pel03020]

SSDB

Motif

Pfam:

RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Biotin_lipoyl_2 RnfC_N Peptidase_M23

Other DBs

NCBI-GI:

330814205

NCBI-GeneID:

10476243

UniProt:

F2I1J1

Position

complement(1085168..1088947)

AA seq 1259 aa
MRLVAYDINEEAQTKQILSAKEQEVYMSDVPLMTEKGTFVVNGTDRVVVNQMHRSPGLFL
DHDKGKGHSSGKLLFNCRVIPYRGSWLDLEYDIKDILYFRIDRKRKIPVTTLLMALGHAK
DELLNLFHKSIRFDFTNENTCKTKFIASGYKNSKIRFDLINADTNKKVVKEGTKIPLPLA
MKFEKEGLKNILINFEELHGRYFSSDIINEKTGEVYFESGDEITVETLEKLNHLNIKTFY
LADIDGMNIGSYLRNTLVVDKNNNSDEACMDIYRVLRPGEPPTPETSRNLFNNLFFNNTR
YDLSDVGRVKLNSKLDLDVDVKNTVLTKEDILRIVEKMLRLKDGKEDTDDIDHLGNRRVR
SVGELVENQFRVGLVRMERAIKEKMSSVEIDTVMPQDLINSKPIAASLKEFFGTSQLSQF
MDQTNPLAEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINS
LATYSKVNRYGFIESPYRVVKNSKVTKEIHHLSAMEEGKFTIAQANSSLKDDSSFKDELV
SCRKSLGFELAKPDNIDYMDVSPKQVVSVAAALIPFLENDDANRALMGSNMMRQAVPLIK
NESPLVGTGMEKDVALDSGATIVAKREGVVEKIDGKRIVVKATSEKDLTISSVDIYNLQK
FQRSNQNTCTNQRPLVKVGDVVKQGDVIADGPSTQFGELALGKNVMVAFMPWLGYNFEDS
ILISERCVSEDVFTSIHIEEYDVMARDTKLGPEEITRDIPNTSEEALRNLDESGIVYVGA
EVKPGDILVGKLTPKGDTKVTSEEKLLRAIFGEKAIDVRDTSLKMPSGTGGTVVEVRVFN
RHGIEKDERALSIEKAEIESVLEDKYAEEAILELNIKSRAIEILEGSSLGDDYKKITKGT
KLTKEILSELTLGETLKLSTDSEKSLSDLAILKEQYSKAKKDIELRFDDKIDKIERGDEL
LPGVMKMVKVFVAMKRKLQPGDKMAGRHGNKGVISRIVPVEDMPYMANGKQVDIVLNPLG
VPSRMNVGQILETHLGWACSELGEKIKKILDEYQKTTKNAAHTKDALSSIYNDKEIEKEI
QNFTNNELKDVLQNLSSGVPIATPVFDGASVEDVTDMLKFSGLPESGQTTLYDGRTGEKF
DREVTVGIIYMLKLYHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY
GAAYTLQEILTVKSDDVAGRTKVYETIVKGDDDFESGIPESFNVLVKEIRSLALNLELN

NT seq 3780 nt +upstreamnt +downstreamnt
ttgcgattagttgcttatgatattaacgaagaagctcaaaccaaacaaattctttctgca
aaagaacaggaagtttacatgagtgatgttcctttgatgactgaaaaaggaacttttgtt
gtgaacggaacggaccgtgtagtagttaatcaaatgcacagaagtccaggattgttcttg
gatcacgataaaggaaaaggtcactccagcggaaagcttttatttaattgtagagtaatt
ccatacagaggttcttggttagaccttgagtacgatattaaagatattttatattttaga
atagatagaaaaagaaaaattccagttaccactctgttaatggcattaggtcatgctaaa
gatgagttgttaaacttatttcacaaatctattagatttgattttactaatgaaaataca
tgcaaaacaaagtttattgcatctggttataaaaactccaaaataagatttgatttaatt
aatgcagatactaataaaaaagttgtaaaagaaggaactaaaattcctctacctttggca
atgaagtttgaaaaagaaggtttaaaaaacattttaattaattttgaagagcttcatgga
agatacttttctagtgatattattaatgaaaaaacaggtgaagtttactttgaatctggc
gatgagattactgtagaaacattagaaaagctaaatcatttaaatatcaaaactttctat
cttgcggatatcgatggaatgaatattggttcttacttaagaaatacgttggtagtagac
aaaaacaacaattcagatgaagcttgtatggatatttaccgtgttttaagaccaggtgag
cctccaacaccggaaacttctagaaatttatttaataacttgtttttcaataacactcgt
tacgatttatccgacgtgggtagagtaaagctaaatagcaaattagacttagatgtagat
gtaaaaaatacagttttaaccaaagaagatatacttagaattgttgaaaaaatgcttcgt
cttaaagatggcaaggaagataccgacgatattgatcacttaggaaacagaagagttaga
tctgtaggtgaactagtggaaaaccaatttagagttgggttagttcgaatggaaagagcc
attaaagagaaaatgtcttctgtagaaattgatactgtcatgccacaagatctcattaac
tcaaaacctatagccgcatcattaaaagaattttttggtacctctcaactatctcaattt
atggaccaaactaatccattagctgaaattacacacaaacgaagagtttctgctttaggg
cctggtggattaacaagagaaagagctggctttgaggtaagggatgtgcacccgacgcat
tacggaagaatttgtccaatcgaaactccagagggaccgaacattggtttgattaatagt
ttagctacttattcaaaagtaaatagatatggatttattgaaagtccttacagagtagta
aaaaattccaaagttactaaagaaattcatcatctttcagcaatggaagagggtaagttt
actatagcccaagcaaattctagcttgaaggatgacagttcatttaaagacgagctagtt
tcttgcagaaaaagccttggatttgaattggcaaaaccagacaatattgattacatggac
gtatcacctaaacaggtggtttcagtcgccgctgcactaattccttttttagaaaatgat
gatgctaacagagcattgatgggatctaacatgatgagacaagctgttcctttgattaaa
aatgagtctcctttagttggaaccggaatggaaaaagatgtggctttagattccggagct
accattgttgcaaaaagagaaggtgtggttgagaaaattgacggaaaaagaattgttgta
aaagcaacttctgaaaaagatcttactatttccagcgttgacatttataatttacaaaaa
tttcaaagatcaaaccagaacacctgtactaatcaacgacctttagttaaagtcggagat
gtagttaagcaaggggatgtcattgcagatggaccttcaactcaatttggagaattagca
ttaggaaaaaatgtaatggtggcatttatgccatggcttggttacaattttgaagattct
atcttaatttctgaaagatgtgtttctgaagatgtatttacctctatccatattgaagaa
tatgacgtgatggcaagagataccaaattaggacctgaagaaattacaagagacattcca
aatactagtgaagaagctttacggaatctagatgaatcaggaattgtttatgttggtgca
gaagtgaaacctggtgatattttagttggaaaattaactcccaaaggagatacaaaagtt
acgtcagaagaaaaattattgagagccatttttggtgaaaaagcaattgatgtaagagac
acttctttaaaaatgccttctggcaccggtggtacagttgtcgaagttagagtttttaat
cgtcatggtattgaaaaagatgaaagagccctttctattgaaaaagctgagatcgaatct
gttttagaagacaagtatgctgaagaagcaatccttgaacttaacattaaaagtagagca
atcgaaattttagaaggttctagcttgggtgatgattataaaaaaattaccaaaggaacc
aaactaacaaaagaaattttatcagaactgacattgggtgaaaccttgaaattatcaaca
gattctgaaaagtcattatctgatctagcaattttgaaagaacagtactctaaagcaaaa
aaagatattgaattaaggtttgatgacaagattgacaaaatagaacgaggtgatgaattg
ttacctggtgttatgaaaatggtaaaagtttttgttgcgatgaaaagaaaattgcagcct
ggtgataaaatggcaggtaggcacggtaacaaaggtgttattagtcgaatagttcctgtt
gaagatatgccttacatggccaatggtaagcaagttgatattgttctaaatcctcttggt
gtgccaagtcgtatgaatgtaggacaaattttagaaactcatttaggctgggcttgttca
gaattgggtgagaaaattaaaaaaatcctagacgaatatcaaaagaccactaaaaatgca
gctcatactaaagatgcattatcctctatttacaatgataaagaaattgaaaaagaaatt
caaaattttaccaacaatgaattaaaagatgttttgcagaatctttcttcaggcgttcct
attgccactccagtatttgacggtgcaagtgtggaagatgttactgacatgttgaaattt
tctgggctgccagagagtggacaaactactttatacgatggaagaacaggcgagaagttt
gatagagaagtgactgttgggataatctatatgcttaaattgtatcatatggtggatgac
aaaatacacgcaagatcaactggtccttatagtttagttacacagcaacctttaggtgga
aaagctcaatttggtggacaaagatttggtgagatggaagtttgggcgctagaagcttat
ggtgccgcttatacactacaagaaattttaactgtgaaatctgacgatgttgcaggaaga
actaaagtatacgaaaccattgttaaaggagatgacgattttgaatcgggtatcccagaa
tcgtttaacgtattagttaaagaaattagatcattagcattaaacttggagcttaattaa

All links

Pathway (5)   
   KEGG PATHWAY (4)   
   KEGG MODULE (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (32)   

Download RDF

DBGET integrated database retrieval system