#=GF ID Ku_PK_bind
#=GF AC PF08785.15
#=GF DE Ku C terminal domain like
#=GF AU Mistry J;0000-0003-2479-5322
#=GF SE pdb_1q2z
#=GF GA 25.00 25.00;
#=GF TC 25.10 25.00;
#=GF NC 24.90 24.90;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch --cpu 4 -E 1000 -Z 75585367 HMM pfamseq
#=GF TP Domain
#=GF WK Ku_(protein)
#=GF RN [1]
#=GF RM 14672664
#=GF RT The 3D solution structure of the C-terminal region of Ku86
#=GF RT (Ku86CTR).
#=GF RA Harris R, Esposito D, Sankar A, Maman JD, Hinks JA, Pearl LH,
#=GF RA Driscoll PC;
#=GF RL J Mol Biol. 2004;335:573-582.
#=GF DR INTERPRO; IPR014893;
#=GF DR SCOP; 1q2z; sf;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC The non-homologous end joining (NHEJ) pathway is one method by
#=GF CC which double stranded breaks in chromosomal DNA are repaired.
#=GF CC Ku is a component of a multi-protein complex that is involved in
#=GF CC the NHEJ. Ku has affinity for DNA ends and recruits the
#=GF CC DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This
#=GF CC domain is found at the C terminal of Ku which binds to DNA-PKcs
#=GF CC [1].
#=GF SQ 2232
#=GS A0A8H7XCH4_9HELO/606-723 AC A0A8H7XCH4.1
#=GS A0A540MX41_MALBA/555-671 AC A0A540MX41.1
#=GS A0A673TQ56_SURSU/594-707 AC A0A673TQ56.1
#=GS A0A2T7PGD0_POMCA/1050-1165 AC A0A2T7PGD0.1
#=GS A0A803LI30_CHEQI/623-739 AC A0A803LI30.1
#=GS A0A8C5C3L5_GADMO/565-639 AC A0A8C5C3L5.1
#=GS A0A397TMH6_9GLOM/616-733 AC A0A397TMH6.1
#=GS A0A8K0E489_9ROSA/567-684 AC A0A8K0E489.1
#=GS A0A4Q4Z609_9PEZI/604-731 AC A0A4Q4Z609.1
#=GS A0A6J0XQJ6_ODOVR/594-707 AC A0A6J0XQJ6.1
#=GS A0A4Q1BC75_TREME/735-842 AC A0A4Q1BC75.1
#=GS A0A833RYJ9_PHYIN/612-729 AC A0A833RYJ9.1
#=GS A0A7J8FWA6_MOLMO/594-707 AC A0A7J8FWA6.1
#=GS A0A663N2F5_ATHCN/564-661 AC A0A663N2F5.1
#=GS A0A7K6SPI2_CALNI/584-697 AC A0A7K6SPI2.1
#=GS A0A667G806_LYNCA/573-686 AC A0A667G806.1
#=GS F8QBW7_SERL3/484-604 AC F8QBW7.1
#=GS B8M6T4_TALSN/593-713 AC B8M6T4.1
#=GS A0A812W2G1_9DINO/527-643 AC A0A812W2G1.1
#=GS A0A4Q4W2S8_9PEZI/596-723 AC A0A4Q4W2S8.1
#=GS A0A7N5ZX60_ANATE/573-680 AC A0A7N5ZX60.1
#=GS A0A7J8JPB5_ROUAE/388-501 AC A0A7J8JPB5.1
#=GS A0A3Q4HVD8_NEOBR/548-654 AC A0A3Q4HVD8.1
#=GS A0A8D0BZF2_SALMN/588-701 AC A0A8D0BZF2.1
#=GS A0A1V4K5W8_PATFA/592-705 AC A0A1V4K5W8.1
#=GS A0A1S3IYV0_LINUN/585-700 AC A0A1S3IYV0.1
#=GS A0A314KIC3_NICAT/568-684 AC A0A314KIC3.1
#=GS A0A2R6W8E8_MARPO/570-686 AC A0A2R6W8E8.1
#=GS A0A2K1XRK6_POPTR/559-675 AC A0A2K1XRK6.1
#=GS A0A7K8RAY5_9PASS/589-684 AC A0A7K8RAY5.1
#=GS A0A455B065_PHYMC/617-730 AC A0A455B065.1
#=GS A0A811MPR6_9POAL/562-679 AC A0A811MPR6.1
#=GS A0A4U0UYT1_9PEZI/585-703 AC A0A4U0UYT1.1
#=GS A0A7L1W113_9PASS/587-700 AC A0A7L1W113.1
#=GS A0A8B7C436_PHODC/567-683 AC A0A8B7C436.1
#=GS A0A7K4LNL9_9AVES/584-676 AC A0A7K4LNL9.1
#=GS A0A093YXS5_9PEZI/628-748 AC A0A093YXS5.1
#=GS A0A5N5CWP9_9PEZI/602-721 AC A0A5N5CWP9.1
#=GS A0A395HU82_ASPHC/600-720 AC A0A395HU82.1
#=GS A0A8C3Y0X6_CATUS/556-652 AC A0A8C3Y0X6.1
#=GS A0A8C5QN55_9ANUR/590-703 AC A0A8C5QN55.1
#=GS A0A0V0S1X5_9BILA/843-980 AC A0A0V0S1X5.1
#=GS L8G410_PSED2/594-714 AC L8G410.1
#=GS A0A068VDM1_COFCA/568-684 AC A0A068VDM1.1
#=GS A0A0P1A7G4_PLAHL/644-761 AC A0A0P1A7G4.1
#=GS A0A7L1AJ09_GYMTI/589-702 AC A0A7L1AJ09.1
#=GS A0A423W510_9PEZI/611-739 AC A0A423W510.1
#=GS A0A7L0RI40_GLABR/585-672 AC A0A7L0RI40.1
#=GS A0A067JXT2_JATCU/563-679 AC A0A067JXT2.1
#=GS W5MU26_LEPOC/587-701 AC W5MU26.1
#=GS A0A7L0CW13_9CHAR/585-698 AC A0A7L0CW13.1
#=GS A0A7K7BT19_APHCE/589-702 AC A0A7K7BT19.1
#=GS A0A7L0C3D1_9AVES/585-698 AC A0A7L0C3D1.1
#=GS A0A8C0FJ10_BUBBB/557-655 AC A0A8C0FJ10.1
#=GS A0A8C0FHN5_BUBBB/554-658 AC A0A8C0FHN5.1
#=GS D2VUC7_NAEGR/630-746 AC D2VUC7.1
#=GS A0A2Y9MQZ7_DELLE/594-707 AC A0A2Y9MQZ7.1
#=GS A0A8C3W3X2_9CETA/594-707 AC A0A8C3W3X2.1
#=GS A0A445E9Q4_ARAHY/1252-1360 AC A0A445E9Q4.1
#=GS A0A7N6AP44_ANATE/585-698 AC A0A7N6AP44.1
#=GS U1FVQ8_ENDPU/605-725 AC U1FVQ8.1
#=GS A0A8C6Q6H1_NOTFU/586-699 AC A0A8C6Q6H1.1
#=GS A0A4S2MZX9_9PEZI/589-709 AC A0A4S2MZX9.1
#=GS A0A3S3NK88_9MAGN/569-685 AC A0A3S3NK88.1
#=GS A0A1C1CV14_9EURO/594-714 AC A0A1C1CV14.1
#=GS A0A6G0YTF0_APHCR/543-656 AC A0A6G0YTF0.1
#=GS A0A673CMZ3_9TELE/574-687 AC A0A673CMZ3.1
#=GS F9X9S4_ZYMTI/601-721 AC F9X9S4.1
#=GS A0A101M813_9EURO/235-355 AC A0A101M813.1
#=GS A0A5J5MI67_MUNRE/570-670 AC A0A5J5MI67.1
#=GS A0A1V6PKQ4_PENDC/589-709 AC A0A1V6PKQ4.1
#=GS M2X531_GALSU/563-677 AC M2X531.1
#=GS A0A0G2E168_9EURO/604-716 AC A0A0G2E168.1
#=GS A0A2G7FJ57_9EURO/600-720 AC A0A2G7FJ57.1
#=GS A0A7K7ET98_9SYLV/585-676 AC A0A7K7ET98.1
#=GS A0A812PWP5_9DINO/376-492 AC A0A812PWP5.1
#=GS A0A453MKZ3_AEGTS/475-593 AC A0A453MKZ3.1
#=GS A0A8J5J1E2_9STRA/618-735 AC A0A8J5J1E2.1
#=GS A0A1V8SWR4_9PEZI/598-718 AC A0A1V8SWR4.1
#=GS A0A2V0PNR8_9CHLO/496-610 AC A0A2V0PNR8.1
#=GS A0A0E0P442_ORYRU/772-888 AC A0A0E0P442.1
#=GS M2QZG0_COCSN/612-732 AC M2QZG0.1
#=GS A0A5N6TRE5_9EURO/597-717 AC A0A5N6TRE5.1
#=GS S4R8Y3_PETMA/225-339 AC S4R8Y3.1
#=GS A0A0R3TLV7_RODNA/156-279 AC A0A0R3TLV7.1
#=GS A0A0G4IH98_PLABS/533-642 AC A0A0G4IH98.1
#=GS A0A4U6X808_9PEZI/563-682 AC A0A4U6X808.1
#=GS A0A319DDQ3_9EURO/597-717 AC A0A319DDQ3.1
#=GS A0A7L1SMX6_ARAGA/584-697 AC A0A7L1SMX6.1
#=GS A0A559M5Z7_9HELO/602-728 AC A0A559M5Z7.1
#=GS A0A8C8SK17_9SAUR/590-684 AC A0A8C8SK17.1
#=GS A0A094DCE2_9PEZI/594-714 AC A0A094DCE2.1
#=GS A0A4P9XX48_9FUNG/619-736 AC A0A4P9XX48.1
#=GS A0A328EC52_9ASTE/545-661 AC A0A328EC52.1
#=GS A0A8I5NRJ8_PAPAN/647-760 AC A0A8I5NRJ8.1
#=GS A0A8V5FN32_MELUD/594-672 AC A0A8V5FN32.1
#=GS A0A672VBD6_STRHB/556-648 AC A0A672VBD6.1
#=GS B8M6T3_TALSN/593-713 AC B8M6T3.1
#=GS A0A2K5QRS6_CEBIM/646-759 AC A0A2K5QRS6.1
#=GS A0A067CC18_SAPPC/588-700 AC A0A067CC18.1
#=GS A0A1D3CXI7_9EIME/727-847 AC A0A1D3CXI7.1
#=GS A0A0F7TKJ2_PENBI/587-707 AC A0A0F7TKJ2.1
#=GS A0A6J2LFG6_9CHIR/594-706 AC A0A6J2LFG6.1
#=GS A0A8D2NK23_ZOSLA/571-671 AC A0A8D2NK23.1
#=GS G3J7W6_CORMM/610-730 AC G3J7W6.1
#=GS A0A0A0AMD0_CHAVO/585-697 AC A0A0A0AMD0.1
#=GS A0A7L2MF93_9PASS/589-702 AC A0A7L2MF93.1
#=GS KU80_COCIM/605-725 AC Q1E6K9.1
#=GS A0A8J4PTU9_9MYCE/605-720 AC A0A8J4PTU9.1
#=GS A0A816D536_9BILA/605-720 AC A0A816D536.1
#=GS A0A1L7WNP6_9HELO/602-722 AC A0A1L7WNP6.1
#=GS A0A8H4V895_9HYPO/595-715 AC A0A8H4V895.1
#=GS A0A2I1FTA2_9GLOM/591-708 AC A0A2I1FTA2.1
#=GS A0A6J1YPG7_ACIJB/594-708 AC A0A6J1YPG7.1
#=GS S7S191_GLOTA/690-808 AC S7S191.1
#=GS A0A7K9Z6P5_9CORV/588-701 AC A0A7K9Z6P5.1
#=GS A0A7K9TPG1_9AVES/584-697 AC A0A7K9TPG1.1
#=GS A0A1V9Z3H9_9STRA/578-690 AC A0A1V9Z3H9.1
#=GS A0A8H4RJV1_9HELO/607-731 AC A0A8H4RJV1.1
#=GS A0A8C0GP22_CHEAB/550-663 AC A0A8C0GP22.1
#=GS A0A2G5UEC2_9PELO/67-184 AC A0A2G5UEC2.1
#=GS A0A1J9QU30_9EURO/605-725 AC A0A1J9QU30.1
#=GS A0A8E2EVS5_9PEZI/609-729 AC A0A8E2EVS5.1
#=GS A0A067H1F7_CITSI/558-674 AC A0A067H1F7.1
#=GS A0A6A3MM66_9STRA/620-737 AC A0A6A3MM66.1
#=GS A0A1X6NHJ2_9APHY/697-817 AC A0A1X6NHJ2.1
#=GS L5LVQ0_MYODS/612-712 AC L5LVQ0.1
#=GS H9GFK3_ANOCA/635-726 AC H9GFK3.3
#=GS A0A383W5C1_TETOB/615-728 AC A0A383W5C1.1
#=GS A0A835JHM3_9ROSI/672-802 AC A0A835JHM3.1
#=GS A0A8C3XV03_CHESE/580-693 AC A0A8C3XV03.1
#=GS A0A672VBM1_STRHB/437-529 AC A0A672VBM1.1
#=GS A0A8H6RQ66_9PEZI/603-723 AC A0A8H6RQ66.1
#=GS A0A2H3HEK1_FUSOX/594-714 AC A0A2H3HEK1.1
#=GS A0A317XWW6_9BASI/728-841 AC A0A317XWW6.1
#=GS A0A179U9S9_BLAGS/605-725 AC A0A179U9S9.1
#=GS A0A4Y7J9E8_PAPSO/576-692 AC A0A4Y7J9E8.1
#=GS A0A6P8HK21_ACTTE/493-608 AC A0A6P8HK21.1
#=GS A0A8H7TPT9_BIOOC/180-300 AC A0A8H7TPT9.1
#=GS A0A7J8FUW6_MOLMO/588-701 AC A0A7J8FUW6.1
#=GS A0A094DJJ6_9PEZI/593-713 AC A0A094DJJ6.1
#=GS A0A7L4DKX2_9AVES/584-697 AC A0A7L4DKX2.1
#=GS A0A673XRT7_SALTR/537-650 AC A0A673XRT7.1
#=GS A0A151M148_ALLMI/593-706 AC A0A151M148.1
#=GS A0A851RRK9_CERFA/587-700 AC A0A851RRK9.1
#=GS A0A8B9PYE0_APTOW/604-706 AC A0A8B9PYE0.1
#=GS A0A5M9JLN5_MONFR/581-699 AC A0A5M9JLN5.1
#=GS A0A8B9M643_9AVES/592-705 AC A0A8B9M643.1
#=GS A0A3Q1J5M6_ANATE/588-701 AC A0A3Q1J5M6.1
#=GS A0A8C8CEC1_ONCTS/530-643 AC A0A8C8CEC1.1
#=GS A0A7K8LV49_9CORV/589-702 AC A0A7K8LV49.1
#=GS A0A8C7EF24_NOTPE/595-692 AC A0A8C7EF24.1
#=GS F6Z328_HORSE/594-707 AC F6Z328.2
#=GS A0A8C5TTC6_9PASS/566-658 AC A0A8C5TTC6.1
#=GS A0A8C4HKK9_DICLA/586-699 AC A0A8C4HKK9.1
#=GS A0A673CKE3_9TELE/559-654 AC A0A673CKE3.1
#=GS Q9V3V9_DROME/31-158 AC Q9V3V9.1
#=GS A0A5F8H7U1_MONDO/480-593 AC A0A5F8H7U1.1
#=GS A0A4W3K306_CALMI/558-670 AC A0A4W3K306.1
#=GS A0A8J5XJM8_DIALT/644-764 AC A0A8J5XJM8.1
#=GS A0A2K3Q725_9HYPO/595-715 AC A0A2K3Q725.1
#=GS A0A3B6N3T5_WHEAT/615-733 AC A0A3B6N3T5.1
#=GS A0A2J6QCX1_9HELO/611-731 AC A0A2J6QCX1.1
#=GS A0A1U8BZW1_MESAU/594-707 AC A0A1U8BZW1.1
#=GS A0A0F4GM27_9PEZI/601-721 AC A0A0F4GM27.1
#=GS A0A671Z2X5_SPAAU/589-647 AC A0A671Z2X5.1
#=GS A0A0D0E4D8_9AGAM/709-829 AC A0A0D0E4D8.1
#=GS A0A8H6IHX5_9AGAR/718-841 AC A0A8H6IHX5.1
#=GS A0A0C9Z2X6_9AGAM/704-824 AC A0A0C9Z2X6.1
#=GS XRCC5_MOUSE/594-707 AC P27641.4
#=GS A0A4P9WL96_9FUNG/636-740 AC A0A4P9WL96.1
#=GS A0A3Q1JAM6_ANATE/585-698 AC A0A3Q1JAM6.1
#=GS A0A2R6W8D1_MARPO/527-612 AC A0A2R6W8D1.1
#=GS A0A059C3F5_EUCGR/564-680 AC A0A059C3F5.1
#=GS G2YGL2_BOTF4/594-712 AC G2YGL2.1
#=GS A0A7L3K433_9PASS/589-702 AC A0A7L3K433.1
#=GS A0A445E9B3_ARAHY/570-686 AC A0A445E9B3.1
#=GS A0A2G9RU00_LITCT/44-156 AC A0A2G9RU00.1
#=GS A0A851WC18_CORMO/588-701 AC A0A851WC18.1
#=GS A0A093R6W5_PYGAD/585-695 AC A0A093R6W5.1
#=GS D3BLM6_POLPP/54-117 AC D3BLM6.1
#=GS M3B8D9_SPHMS/605-725 AC M3B8D9.1
#=GS A0A669AYG5_ORENI/565-657 AC A0A669AYG5.1
#=GS A0A218ZEP9_9HELO/571-688 AC A0A218ZEP9.1
#=GS A0A6J5WLI6_PRUAR/480-596 AC A0A6J5WLI6.1
#=GS A0A672V7U3_STRHB/559-651 AC A0A672V7U3.1
#=GS A0A7K6HDG0_9PASS/583-696 AC A0A7K6HDG0.1
#=GS A0A6J2HTN9_9PASS/590-703 AC A0A6J2HTN9.1
#=GS A0A7L1FX26_SYLBO/587-700 AC A0A7L1FX26.1
#=GS A0A7N0T050_KALFE/237-353 AC A0A7N0T050.1
#=GS S0DUX3_GIBF5/594-714 AC S0DUX3.1
#=GS A0A8J4KCM2_EUDMI/585-677 AC A0A8J4KCM2.1
#=GS A0A3N4K181_9PEZI/602-722 AC A0A3N4K181.1
#=GS A0A397JLX6_9GLOM/613-730 AC A0A397JLX6.1
#=GS A0A150H212_GONPE/791-895 AC A0A150H212.1
#=GS A0A1S3ESV1_DIPOR/587-700 AC A0A1S3ESV1.1
#=GS A0A7K5E2Z8_POLCE/589-702 AC A0A7K5E2Z8.1
#=GS A0A7K9S851_9PASS/586-699 AC A0A7K9S851.1
#=GS A0A8C4LXE2_EQUAS/592-705 AC A0A8C4LXE2.1
#=GS A0A4W3JJX1_CALMI/594-683 AC A0A4W3JJX1.1
#=GS A0A427YJD3_9TREE/749-844 AC A0A427YJD3.1
#=GS R1GM08_BOTPV/557-677 AC R1GM08.1
#=GS A0A7J0F6C2_9ERIC/476-524 AC A0A7J0F6C2.1
#=GS A0A6J1WJN3_GALME/570-679 AC A0A6J1WJN3.1
#=GS A0A0G4M3L9_9PEZI/577-697 AC A0A0G4M3L9.1
#=GS A0A8D2NLB8_ZOSLA/584-676 AC A0A8D2NLB8.1
#=GS A0A176WCT3_MARPO/726-789 AC A0A176WCT3.1
#=GS A0A556TW99_BAGYA/515-628 AC A0A556TW99.1
#=GS A0A6P5TE81_PRUAV/563-679 AC A0A6P5TE81.1
#=GS A0A835GLM3_SPOEX/567-678 AC A0A835GLM3.1
#=GS A0A2J7Q0X8_9NEOP/579-691 AC A0A2J7Q0X8.1
#=GS A0A210PPZ4_MIZYE/596-711 AC A0A210PPZ4.1
#=GS A0A0H1B416_9EURO/605-725 AC A0A0H1B416.1
#=GS D8QMI2_SELML/557-673 AC D8QMI2.1
#=GS A0A7R7ZK47_ASPCH/603-722 AC A0A7R7ZK47.1
#=GS A0A0V0VJH8_9BILA/824-947 AC A0A0V0VJH8.1
#=GS A0A8J2QKK9_9NEOP/567-676 AC A0A8J2QKK9.1
#=GS A0A485MZS9_LYNPA/560-673 AC A0A485MZS9.1
#=GS S9UV21_9TRYP/581-702 AC S9UV21.1
#=GS A0A670YD69_PSETE/555-646 AC A0A670YD69.1
#=GS A0A6P9C0X7_PANGU/591-703 AC A0A6P9C0X7.1
#=GS A0A7J6VJH8_THATH/496-612 AC A0A7J6VJH8.1
#=GS A0A6I8UIT2_DROPS/568-670 AC A0A6I8UIT2.1
#=GS A0A8C7Z1M5_9TELE/570-683 AC A0A8C7Z1M5.1
#=GS A0A1S2YLI0_CICAR/561-677 AC A0A1S2YLI0.1
#=GS KU80_ASPFU/595-715 AC Q4WI96.1
#=GS A0A0L9TLD8_PHAAN/566-682 AC A0A0L9TLD8.1
#=GS A0A6G1DZI3_9ORYZ/565-681 AC A0A6G1DZI3.1
#=GS G2X7R6_VERDV/604-724 AC G2X7R6.1
#=GS A0A8V5FQZ2_MELUD/595-673 AC A0A8V5FQZ2.1
#=GS A0A1L9UM09_ASPBC/590-710 AC A0A1L9UM09.1
#=GS A0A7K9CUF4_9AVES/585-698 AC A0A7K9CUF4.1
#=GS A0A814P1L2_9BILA/617-732 AC A0A814P1L2.1
#=GS A0A8C3HIG1_CHRPI/593-706 AC A0A8C3HIG1.1
#=GS A0A427XFZ5_9TREE/779-888 AC A0A427XFZ5.1
#=GS A0A6P8QX62_GEOSA/595-708 AC A0A6P8QX62.1
#=GS A0A072P0L4_9EURO/578-698 AC A0A072P0L4.1
#=GS A0A1U8K448_GOSHI/504-620 AC A0A1U8K448.1
#=GS A0A1X0S1P1_RHIZD/590-712 AC A0A1X0S1P1.1
#=GS A0A0D1ZIV0_9EURO/574-694 AC A0A0D1ZIV0.1
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A0A834Z9E9_9MAGN/34-84 ............................................................i-PVQDFE....AMIS........RRDG.........TKWVN..K....................AI.GDIKNVIFDL.V..E..............N..........S....Y..E..G.....-...-...............-.-.....-----..------..--....--.-..............--....-...-.-----..--.-----.--..--......---...--..............----------..................-..------.................-----..........--.-...---.----.---lirrqhegamq...........................
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A0A835Y9X0_9CHLO/766-877 ............................................................t-AVADFR....SMLE........QGGE.........--VAS..R....................AV.SEMCELVPRL.V..E..............R..........S....I..G..D.....Q...M...............Y.D.....KAIQC..AQALRE..GC....AA.R..............AE....A...T.AFNAF..LR.DLADR.CT..--......RLG...LR..............GFL-TRLAAG..................R..VGLLTA.................ADLA-..........--.-...---.----.---tarsqqqpgsa...........................
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#=GC seq_cons .............................................................sPsp-F+....thlp........ppss............hp..c....................ss.pQhtshIcph.l..p..............s..........s.......s..s.....p...h...............Y.......Kul-C..lpshR-..ps....lp.h..............p-....s...p.taNsF..Lp.sLKpp.l....p.......ps...hp..............cFW.phlhps..................p..lsLIsp.................pEstt..........Ss.V...otc.EApp.Fh.h.....................................
//
