GenomeNet

Database: Pfam
Entry: Lsm_C
LinkDB: Lsm_C
Original site: Lsm_C 
#=GF ID   Lsm_C
#=GF AC   PF14894.5
#=GF DE   Lsm C-terminal
#=GF AU   Eberhardt R
#=GF SE   Jachkhmmer:Q8ZVU2
#=GF GA   27.00 27.00;
#=GF TC   40.50 39.80;
#=GF NC   20.20 18.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   12668760
#=GF RT   Structure and assembly of an augmented Sm-like archaeal protein
#=GF RT   14-mer.
#=GF RA   Mura C, Phillips M, Kozhukhovsky A, Eisenberg D;
#=GF RL   Proc Natl Acad Sci U S A. 2003;100:4539-4544.
#=GF DR   INTERPRO; IPR028277;
#=GF CC   This domain is found at the C-terminus of archaeal Lsm (like-Sm)
#=GF CC   proteins [1].
#=GF SQ   51
#=GS A8M9J8_CALMQ/80-139       AC A8M9J8.1
#=GS A2BK21_HYPBU/84-146       AC A2BK21.1
#=GS A0A117SWM6_9CREN/81-139   AC A0A117SWM6.1
#=GS A4YJ07_METS5/79-141       AC A4YJ07.1
#=GS K0INX4_NITGG/73-136       AC K0INX4.1
#=GS A0A135VTY1_9ARCH/39-104   AC A0A135VTY1.1
#=GS Q980L6_SULSO/79-141       AC Q980L6.1
#=GS A3DMZ9_STAMF/82-144       AC A3DMZ9.1
#=GS A0A101X6J3_9CREN/81-139   AC A0A101X6J3.1
#=GS A0A135VUV2_9ARCH/81-141   AC A0A135VUV2.1
#=GS A0A0M0BSN1_9ARCH/77-140   AC A0A0M0BSN1.1
#=GS A0A151BQR2_9ARCH/76-139   AC A0A151BQR2.1
#=GS A0A151BL74_9ARCH/67-131   AC A0A151BL74.1
#=GS A0A0V8RTF1_PYROC/84-146   AC A0A0V8RTF1.1
#=GS A0A0P0N1L9_9CREN/80-142   AC A0A0P0N1L9.1
#=GS A0A0F8W4W7_9ARCH/80-138   AC A0A0F8W4W7.1
#=GS A0A0M0BHK1_9ARCH/78-140   AC A0A0M0BHK1.1
#=GS A0A0F2L9Z7_9CREN/81-140   AC A0A0F2L9Z7.1
#=GS A0A151BNQ2_9ARCH/60-125   AC A0A151BNQ2.1
#=GS A0A0N8PWA3_9ARCH/74-137   AC A0A0N8PWA3.1
#=GS I3TD69_THEC1/82-144       AC I3TD69.1
#=GS A0A151BGS6_9ARCH/77-139   AC A0A151BGS6.1
#=GS D9Q078_ACIS3/83-145       AC D9Q078.1
#=GS L0AD38_CALLD/83-145       AC L0AD38.1
#=GS A0A151BFB5_9ARCH/76-139   AC A0A151BFB5.1
#=GS A0A101X9L7_9CREN/81-140   AC A0A101X9L7.1
#=GS F4B811_ACIHW/83-145       AC F4B811.1
#=GS E0SPS7_IGNAA/80-142       AC E0SPS7.1
#=GS A0A117SUX3_9CREN/78-138   AC A0A117SUX3.1
#=GS A0A0F2L5W5_9CREN/81-139   AC A0A0F2L5W5.1
#=GS A0A0P9DVS2_9ARCH/76-139   AC A0A0P9DVS2.1
#=GS A0A0M0BQ58_9ARCH/76-138   AC A0A0M0BQ58.1
#=GS A0A101XIW9_9CREN/80-121   AC A0A101XIW9.1
#=GS B8D654_DESK1/82-144       AC B8D654.1
#=GS A0A0N7HBG1_9ARCH/73-136   AC A0A0N7HBG1.1
#=GS A0A0M0C190_9ARCH/87-149   AC A0A0M0C190.1
#=GS A0A151B9L4_9ARCH/68-131   AC A0A151B9L4.1
#=GS F9VMU2_SULTO/78-140       AC F9VMU2.1
#=GS A0A135VMU1_9ARCH/81-141   AC A0A135VMU1.1
#=GS Q4JAY5_SULAC/79-141       AC Q4JAY5.1
#=GS Q8ZVU2_PYRAE/82-140       AC Q8ZVU2.1
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q 1; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q F; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q X; 82-139;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q Z; 82-139;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q B; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q K; 82-139;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q P; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q S; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q J; 82-139;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q V; 82-139;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q D; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q I; 82-139;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q R; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q L; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q O; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q Q; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q C; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q U; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q T; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q Y; 82-139;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q G; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q M; 82-139;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q A; 82-137;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q H; 82-139;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q E; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q N; 82-139;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q 2; 82-138;
#=GS Q8ZVU2_PYRAE/82-140       DR PDB; 1M5Q W; 82-139;
#=GS A0A101WZN9_9CREN/81-139   AC A0A101WZN9.1
#=GS G4RLV2_THETK/81-140       AC G4RLV2.1
#=GS W7KIU3_9CREN/79-141       AC W7KIU3.1
#=GS E6N696_9ARCH/78-139       AC E6N696.1
#=GS A0A101WW20_9CREN/81-139   AC A0A101WW20.1
#=GS I0A234_FERFK/78-140       AC I0A234.1
#=GS A0A117SQC8_9CREN/80-139   AC A0A117SQC8.1
#=GS D5U347_THEAM/82-144       AC D5U347.1
#=GS E1QV44_VULDI/81-139       AC E1QV44.1
#=GS A0A060HMY4_9ARCH/137-200  AC A0A060HMY4.1
A8M9J8_CALMQ/80-139                  ...........l-RELAKILEKYF---PGMVKYIEETNTIIV.SENVTVTEEGV.KGTGLVARRVKEIYDEYVQSRK...
A2BK21_HYPBU/84-146                  ............AREFADYIVRKLGLRPDAVRVYEDAGVVVV.YNSIRVTANGV.EGAGTLAAKISYLLKEYLEAKR...
A0A117SWM6_9CREN/81-139              ...........l-REFARYIDRYF---PGMVKYIEEANVVQV.GN-VKVTTAGI.EGSGPLAKRVKELFDEFMTKRK...
A4YJ07_METS5/79-141                  ............AREFADVVQKNLGLRPGDVKVYEEVGIITV.MERIKVSESGV.EGSGPMAQRIYDLYNEYIAKKK...
K0INX4_NITGG/73-136                  ..........pf--DFKALAERLSRVFPGLVKIREDVGAIIV.MDKIKVTQSGVeEGSGLAADRVRSIYDEFMRET-t..
A0A135VTY1_9ARCH/39-104              erevsleglvke-------LEKAF--PPGGVQYFAEQPLILV.MNKIRITPEGV.EGTGPLYERVAQIADEWFKE--hg.
Q980L6_SULSO/79-141                  ............PREFAELVEKSLNLRPADIKVYDETSVVTI.LEKIKVSQNGV.EGSGPMAQRIYDLYNDYINKKK...
A3DMZ9_STAMF/82-144                  ............PNDFREYIIREMRLPEHLVKIIPEARVVIV.QGRYKVSEKGV.EGTGPLAQTLYEFFQRYIEERK...
A0A101X6J3_9CREN/81-139              ...........l-REFARYIDRYF---PGMVKYIEEANVVQV.GN-VKVTTAGI.EGSGPLAKRVKELFDEFMTKRK...
A0A135VUV2_9ARCH/81-141              .........leg---LAKELEKTF--PPGGVQFYPDTGIILV.MNKIRISKDGI.EGSGPLYERVAVIADDWLKE--hg.
A0A0M0BSN1_9ARCH/77-140              .......pfnle-----GLAERIERVFPNMVRLYADAGIIVV.MDKIRVDEGGIvEGSGPAADRVRDIYDRFVSE--at.
A0A151BQR2_9ARCH/76-139              .........afd---LRGLAERLERVFPRMVKLYEKEGFIWV.MDRVKVTEKGVvEGSGPAAERVQRVYSQFLRE--ar.
A0A151BL74_9ARCH/67-131              ........refd---LKGLAERLEKVFPRMVRLYEKEGFIWV.MEKIKVTADGVvEGSGPMAERVQRVYNQFISKM-k..
A0A0V8RTF1_PYROC/84-146              ............PREFANYVARRLGLRPDAIKVFQDAGVVVI.YNSIRVTANGV.EGAGPLAAKVSYVLREYIEAKK...
A0A0P0N1L9_9CREN/80-142              ............PREFANYVAKKLGLRPDAIKVFQDAGVVVI.YNSIRVTANGV.EGAGPLVAKVSYVLKEYLEAKR...
A0A0F8W4W7_9ARCH/80-138              .ialadriatif--------------SKGHVNYINDQNIISIlSGKIIVDEKGV.RGEGPSADRVRKIYEQF-----kmd
A0A0M0BHK1_9ARCH/78-140              ..........fd---LRSLAERLERVFPRMVKLIEEAGVIVV.MDKIRVTEKGIiEGRGPAAERVQKIYEEFLKEQ-s..
A0A0F2L9Z7_9CREN/81-140              ...........l-RGFAKYAEKYF---PGMVRYVEESNIVMI.GDKVRVSEIGI.EGSGPLAERVRQIYEEYMKKR-q..
A0A151BNQ2_9ARCH/60-125              .......erefd---IKKLAERLEKVFPRMVRLYEKEGFIWV.MDKIKVTAEGVvEGSGPMAERVQRVYSQFVSQ--mk.
A0A0N8PWA3_9ARCH/74-137              ..........pf--DLKALAERLEKVFPTLVRLYEDKGFIWV.MDKVKVTEKGVvEGTGPAAERVQKVYDQFLSE--ik.
I3TD69_THEC1/82-144                  ............PEEFKNIIIKEMKLPEHLVKIIPEARVVEV.QGRYRVSERGV.EGTGPIAETLYRLLEQYLETRR...
A0A151BGS6_9ARCH/77-139              ..........pf--DLRRLAERLDRVFPRMVKLYEEAGVITV.TDRIRVTASGVvEGTGPMAERVQKIYEEFVKE--i..
D9Q078_ACIS3/83-145                  ............AKEFMEFLLRFGNIDRSQVKVYEDANVVEV.SRTIRVSKNGV.EGSGPLAQKVNTLFREYLRTK-g..
L0AD38_CALLD/83-145                  ............AKEFSEFLSRFGNIEKHLIKVYDDINVVEV.GKSIKVSKDGV.EGSGPLAQKIYSIYREYLRTK-g..
A0A151BFB5_9ARCH/76-139              .........pfn---LEALAERLERVFPNMVRLFPEAGVIVV.MDKIRVDETGVvEGSGPAAERVKRVYDEFVREM-k..
A0A101X9L7_9CREN/81-140              ...........l-RGFAKYAEKFF---PGMVKYIEESNIVLI.SDKVRVSEIGI.EGSGPLAERVKQIYEEFVRRQR...
F4B811_ACIHW/83-145                  ...........v-KEFASLIEKSLNLRPGDIKVYEEAGVITV.LEKIKVTENGV.EGSGPLAQRIYDLFNEYVEKKK...
E0SPS7_IGNAA/80-142                  ............AEEFASLVISKLGLRPDVVKVLSDTNSVII.YDRIKVTEAGV.EGTGSFAQRIYEIYTEYIESKK...
A0A117SUX3_9CREN/78-138              .........dla--DFAKELDKYF---PGMVKYIQEANIIQV.GEGVRVTQNGI.EGSGLTAKRVKELFDNYLKRK-q..
A0A0F2L5W5_9CREN/81-139              ...........l-REFARYIDKYF---PGMVKYVEEANIVQI.GN-VKVTTAGV.EGSGPLAKRVKELFDEFLSKRK...
A0A0P9DVS2_9ARCH/76-139              ..........pf--DLKALSERLEKVFPTMVRLYEDKGFIWV.MDKIKVSEKGVvEGTGPAAERVQKVYDLFLSET-r..
A0A0M0BQ58_9ARCH/76-138              ..........pf--DLKALSERLEKVFPTMVKLYEDQGFIWV.MEKIKVTEKGItEGSGPIADRVQRVHTLFT----kea
A0A101XIW9_9CREN/80-121              ...........l-RELAKILEKYF---PGMVKYIDETNTIIV.GENVTVTEEGV.KGTG------------------...
B8D654_DESK1/82-144                  ............PEEFKEWVLREMKIPEHMVKVIPEARVVEV.QGRYRVGEDGV.LGSGPIAETLHSIYKKYIEYRR...
A0A0N7HBG1_9ARCH/73-136              ..........pf--DLKALAERLSRVFPGLVKIREDVGAIIV.MDKIKVTESGIeEGSGLSATRVKAIYDEFLRES-k..
A0A0M0C190_9ARCH/87-149              ..........pf--DLKSLANRLEKVFPTMVKLYEDKGFIWV.MNKVKVTEKGVvEGSGPAAERVQRVYTQFISE--g..
A0A151B9L4_9ARCH/68-131              ..........pl--DLKNLAERLERVFPRMVRLYEEQGVIVV.MDRIRVTEKGVvEGSGPAAERVQRIYEEFMRE--at.
F9VMU2_SULTO/78-140                  ............PKEFADLVTKELNLRAGDAKVYEEAGVVVI.LDRIKVSENGV.EGSGPLAQRIYDLYNDYINKKK...
A0A135VMU1_9ARCH/81-141              .........leg---LAKELEKTF--PPGGVQFYPDTGIILV.MNKIRISKDGI.EGSGPLYERVAVIADDWLKE--hg.
Q4JAY5_SULAC/79-141                  ............PREFADVITKELNLRTTDIKVYEEAGVVTI.LDRVKVTENGV.EGSGPLAQKVYDIFNSYIDKKK...
Q8ZVU2_PYRAE/82-140                  ............MREFAKQAEKIF---PGMVKYIEETNVVLI.GDKVRVSEIGV.EGVGPVAERAKRLFEEFLK---ry.
#=GR Q8ZVU2_PYRAE/82-140       SS    ............HHHHHHHHHHHS---TTTEEEETTTTEEEE.TTTEEEETTEE.E--SHHHHHHHHHHHHHHH----X.
A0A101WZN9_9CREN/81-139              ...........l-REFARYIDRYF---PGMVKYIEEANVVQV.GN-VKVTTAGI.EGSGPLAKRVKELFDEFMTKRK...
G4RLV2_THETK/81-140                  ...........l-RSFAKYAEKYF---PGMVKYIEESNIVLI.GDKVRVSEIGI.EGSGPLAERVRQIYEEFVKKR-g..
W7KIU3_9CREN/79-141                  ...........v-KEFADLVEKSLNLRPGDVKVYEEAGVVTV.LEKIKVTEAGV.EGSGPLAQRVFDIYNEYVSKKR...
E6N696_9ARCH/78-139                  ..........pd---MSALVERLNRLFPNLVVYHKESDTIVV.MDRIRVSREGV.FGEGPAAERVRKVYEEFMREQK...
A0A101WW20_9CREN/81-139              ...........l-REFARYIDRYF---PGMVKYIEEANVVQV.GN-VKVTTAGI.EGSGPLAKRVKELFDEFMTKRK...
I0A234_FERFK/78-140                  ............PDEFARLIVSKLNIREADIKTYPEAGVLVI.LNNIRVSDKGV.EGSGPLAHKIYGLYTEYIENKK...
A0A117SQC8_9CREN/80-139              ...........l-RELAKILEKYF---PGMVKYIDETNTIIV.GENVTVTEEGV.KGTGLMARRVKEIYDEYVQSRR...
D5U347_THEAM/82-144                  ............PEEFKDFLLHEMKIAEHLVRVIPEARIVEV.QGRYRVSEKGV.EGVGPMAETLYSLWKKYIAVK-e..
E1QV44_VULDI/81-139                  ...........l-REFARYIDKYF---PGMVKYIEEANVVQV.GN-VKVTTAGV.EGSGPLAKRVKELFDEFMSKRR...
A0A060HMY4_9ARCH/137-200             ..........pf--DFKALAERLERAFPGLVKIREDVGAIIV.MDKIKVTQSGVeEGTGLSADRVRSIFDAFMKETK...
#=GC SS_cons                         ............HHHHHHHHHHHS---TTTEEEETTTTEEEE.TTTEEEETTEE.E--SHHHHHHHHHHHHHHH----X.
#=GC seq_cons                        ..............-htphl-+hhtl.PshVKlhEEssllhV.hc+l+VocpGV.EGSGPhAcRVpclac-alpcp....
//
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