GenomeNet

Database: Pfam
Entry: RNA_polI_A14
LinkDB: RNA_polI_A14
Original site: RNA_polI_A14 
#=GF ID   RNA_polI_A14
#=GF AC   PF08203.7
#=GF DE   Yeast RNA polymerase I subunit RPA14
#=GF AU   Mistry J, Wood V
#=GF SE   manual
#=GF GA   25.00 25.00;
#=GF TC   25.00 25.10;
#=GF NC   23.40 21.00;
#=GF BM   hmmbuild --amino HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   15647272
#=GF RT   The fission yeast protein, Ker1p, is an ortholog of RNA
#=GF RT   polymerase I subunit A14 in saccharomyces cerevisiae, and is
#=GF RT   required for stable association of Rrn3p and RPA21 in Pol I. 
#=GF RA   Imazawa Y, Hisatake K, Mitsuzawa H, Matsumoto M, Tsukui T,
#=GF RA   Nakagawa K, Nakadai T, Shimada M, Ishihama A, Nogi Y; 
#=GF RL   J Biol Chem 2005; [Epub ahead of print]
#=GF DR   INTERPRO; IPR013239;
#=GF CC   This is a family of yeast proteins.  A14 is one of the final two
#=GF CC   subunits of Saccharomyces cerevisiae RNA polymerase I and is
#=GF CC   proposed to play a role in the recruitment of pol I to the
#=GF CC   promoter [1].
#=GF SQ   67
#=GS W0W3Q5_ZYGBA/18-88       AC W0W3Q5.1
#=GS A0A024JM37_GEOCN/13-95   AC A0A024JM37.1
#=GS Q6FVK6_CANGA/13-52       AC Q6FVK6.1
#=GS C5MGP9_CANTT/16-88       AC C5MGP9.1
#=GS W6MP54_9ASCO/17-92       AC W6MP54.1
#=GS G2WAQ5_YEASK/18-103      AC G2WAQ5.1
#=GS F2QWB2_PICP7/14-88       AC F2QWB2.1
#=GS H0GST6_SACCK/51-136      AC H0GST6.1
#=GS C5DMV1_LACTC/13-52       AC C5DMV1.1
#=GS G0VBU9_NAUCC/18-103      AC G0VBU9.1
#=GS G8Y1X5_PICSO/17-94       AC G8Y1X5.1
#=GS C4YQS9_CANAW/16-88       AC C4YQS9.1
#=GS C8Z571_YEAS8/18-103      AC C8Z571.1
#=GS A0A023ZAA7_YEASX/18-103  AC A0A023ZAA7.1
#=GS K0KMI5_WICCF/16-84       AC K0KMI5.1
#=GS B5VG50_YEAS6/12-97       AC B5VG50.1
#=GS Q6CQJ1_KLULA/15-101      AC Q6CQJ1.1
#=GS E7KAW2_YEASA/18-103      AC E7KAW2.1
#=GS I2GVQ0_TETBL/18-102      AC I2GVQ0.1
#=GS E7KLN7_YEASL/18-103      AC E7KLN7.1
#=GS A7TEM4_VANPO/18-102      AC A7TEM4.1
#=GS W1QHS4_OGAPD/14-79       AC W1QHS4.1
#=GS J7R050_KAZNA/17-106      AC J7R050.1
#=GS E7Q272_YEASB/18-103      AC E7Q272.1
#=GS C5DYK3_ZYGRC/18-88       AC C5DYK3.1
#=GS A5E260_LODEL/17-90       AC A5E260.1
#=GS E7NFS4_YEASO/18-103      AC E7NFS4.1
#=GS B9WGX7_CANDC/16-88       AC B9WGX7.1
#=GS C4R4N5_PICPG/14-88       AC C4R4N5.1
#=GS J4U047_SACK1/7-92        AC J4U047.1
#=GS E7QCX4_YEASZ/18-103      AC E7QCX4.1
#=GS G8B9X7_CANPC/17-90       AC G8B9X7.1
#=GS C7GX37_YEAS2/18-103      AC C7GX37.1
#=GS Q6BWW9_DEBHA/33-111      AC Q6BWW9.2
#=GS C4Y5H7_CLAL4/16-92       AC C4Y5H7.1
#=GS G3B5I0_CANTC/16-95       AC G3B5I0.1
#=GS A6ZYB5_YEAS7/18-103      AC A6ZYB5.1
#=GS S6F307_ZYGB2/18-88       AC S6F307.1
#=GS C5DMV1_LACTC/43-70       AC C5DMV1.1
#=GS H8X8C0_CANO9/17-90       AC H8X8C0.1
#=GS H2AR78_KAZAF/18-99       AC H2AR78.1
#=GS Q750W5_ASHGO/15-94       AC Q750W5.1
#=GS I2JZB1_DEKBR/15-88       AC I2JZB1.1
#=GS B3LGC7_YEAS1/18-103      AC B3LGC7.1
#=GS Q6C9A0_YARLI/8-79        AC Q6C9A0.1
#=GS M9N7X4_ASHG1/15-94       AC M9N7X4.1
#=GS W7PXU6_YEASX/18-103      AC W7PXU6.1
#=GS Q6FVK6_CANGA/45-67       AC Q6FVK6.1
#=GS R9XJF5_ASHAC/15-94       AC R9XJF5.1
#=GS A3LZG0_PICST/17-95       AC A3LZG0.2
#=GS G8BR53_TETPH/16-98       AC G8BR53.1
#=GS G3ANE0_SPAPN/16-80       AC G3ANE0.1
#=GS M3IIU3_CANMX/16-88       AC M3IIU3.1
#=GS N1PAE4_YEASC/18-103      AC N1PAE4.1
#=GS W0VL84_ZYGBA/18-88       AC W0VL84.1
#=GS A0A024XRE5_YEASX/18-103  AC A0A024XRE5.1
#=GS G0WGQ4_NAUDC/18-105      AC G0WGQ4.1
#=GS H0GDH9_SACCK/18-103      AC H0GDH9.1
#=GS G8JTE9_ERECY/15-97       AC G8JTE9.1
#=GS W0TEB1_KLUMA/15-101      AC W0TEB1.1
#=GS RPA14_YEAST/18-103       AC P50106.1
#=GS RPA14_YEAST/18-103       DR PDB; 4C3H D; 18-100;
#=GS RPA14_YEAST/18-103       DR PDB; 4C2M D; 18-100;
#=GS RPA14_YEAST/18-103       DR PDB; 4C3J D; 18-100;
#=GS RPA14_YEAST/18-103       DR PDB; 2RF4 F; 18-101;
#=GS RPA14_YEAST/18-103       DR PDB; 2RF4 D; 18-101;
#=GS RPA14_YEAST/18-103       DR PDB; 2RF4 B; 18-101;
#=GS RPA14_YEAST/18-103       DR PDB; 4C2M S; 18-100;
#=GS RPA14_YEAST/18-103       DR PDB; 4C3I D; 18-100;
#=GS G8ZXC8_TORDC/15-80       AC G8ZXC8.1
#=GS A5DFY4_PICGU/17-93       AC A5DFY4.2
#=GS A0A024Y6W8_YEASX/18-103  AC A0A024Y6W8.1
#=GS Q5A4Y4_CANAL/16-88       AC Q5A4Y4.1
#=GS E7LSQ7_YEASV/18-103      AC E7LSQ7.1
#=GS G8Y4V2_PICSO/17-94       AC G8Y4V2.1
W0W3Q5_ZYGBA/18-88                  ....TPIVAHALAPpTHVSHDEMLQFLDKFI.SEREL..........SVSEQNIGADAN----........---GTDVSLSSALSQLKRLQRDFKGLPPS-a.....
A0A024JM37_GEOCN/13-95              ...e-PTALHILSN.KLASTEEAEQIITAYL.DAAESss.....aldAAAEAAIAANSNSTLV.......dSLASALTKNENTLNQLKRVQRSLRGLPPV-l.....
Q6FVK6_CANGA/13-52                  ...g-PVVVKQRGVpQHVSREEMLAFLDKFV.QQKED..........AT--------------........------------------------------ggslal
C5MGP9_CANTT/16-88                  ....TPTSIRLLKI.NNLGASEAERALSEFI.DASEL..........NISGKATTDFNT----........TGLAGNSESPAVLSQLKRIQRSLRGLPPV-i.....
W6MP54_9ASCO/17-92                  ....TPVVAHVAAI.RVIEDDQAQVILSNFI.DQCEK..........LEEESLSTTLNSE-GG........SRTTYSGPPSEKVSHLKRLQRELRGLPPL-l.....
G2WAQ5_YEASK/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
F2QWB2_PICP7/14-88                  ....HPVSINVTGQ.QPLETENVQELLDEFIaKADEE..........TAQELNFMALNDG---........TTATATNNNAAKISQLKRLQRELRGLPPL-l.....
H0GST6_SACCK/51-136                 ....TPVVIHATQLpQHVSTDEVLQFLEGFI.NEKEN..........IIDSTTTNVVSDNAAGadvvpavnASLSMDTNLSSSLSQLKRIQRDFKGLPP--pk....
C5DMV1_LACTC/13-52                  ....HPVVMHAGPR.EHVSQEQAMQFLGRFI.REREE..........EADA------------........------------------------------dasga.
G0VBU9_NAUCC/18-103                 ....TPVVIHTTAQpQHVNKDDVLKFLDKFI.TEKENliq...nstvALGSAEGTAAVGGDAA.......tALLSIDTTLSSSLSQLKRLQRDFKGLPPA-s.....
G8Y1X5_PICSO/17-94                  ....TPVVTHIKSS.SNLSKEEAESTLAEFI.STSEA..........IISGANGLGSYPKEAS.......qTGLSKEGNNASLLSQLKRIQRELRGLPPL-l.....
C4YQS9_CANAW/16-88                  ....TPTTVRVHRV.NDTTSSEAERILTSFI.DASEI..........NISGKGTAETNT----........TGISGGNESPAIVSQLKRIQRSLRGLPPLM......
C8Z571_YEAS8/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
A0A023ZAA7_YEASX/18-103             ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
K0KMI5_WICCF/16-84                  ....TPVTVHLLGS.KALDKEETERFLTKFI.DGEET..........RSNAKLLNSSGA----........----TASTAGASVSQLKRIQRDLRGLPPL-e.....
B5VG50_YEAS6/12-97                  ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
Q6CQJ1_KLULA/15-101                 ....TPVVVHTVGTpTYLSKDEVLQFLASFI.AEKESvpg....vtlASSGASTTQGAVTSGGi.....saDEMALDTQLSSALAQLKRVERDFKGLPPQ-v.....
E7KAW2_YEASA/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
I2GVQ0_TETBL/18-102                 ....TPITIHTTSSpQHVSHDEVLQFLEKFI.NEKETdiag..tasfSVSDITTESESGD-TT........QSNTIDTNLISAVSQLKRIQRDFKGLPPSM......
E7KLN7_YEASL/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
A7TEM4_VANPO/18-102                 ....TPIVIHEIAEpQYVSKDQVLKFLETFI.DSKETlv......snVSTSIGVESSSMIQPAl.....dnAMQSVDTNLTSSLSQLKRLQRDFKGLPPAM......
W1QHS4_OGAPD/14-79                  ...s-PVVASVHAA.VALSSDETQQMLDQFI.SECDH..........L----EATAMD-----........--KSYHGPDSTTLSQLKRLQRELRGLPPL-l.....
J7R050_KAZNA/17-106                 ....TPVSIHRVGKpKHVSKDEILSFLDTFI.TEKEAvvdtsvgnagVAATAGSDG------ApgsvasltGLITVDTNLTSAVSQLRRIQRDFKGLPPA-a.....
E7Q272_YEASB/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
C5DYK3_ZYGRC/18-88                  ...s-PIVAHTNGTpQHVSRDEMLQFLERFI.SEKET..........----LGGDQALGT---........DAASSDISLSSALSQLKRVQRDFQGLPPS-a.....
A5E260_LODEL/17-90                  ....TPTTVRVRSS.SLIPQSQAESLLTEFI.DASEF..........NNNPVNQEPQSQK---........SGMASNSGNAAVLSQLRRIQRNLRGLPPL-e.....
E7NFS4_YEASO/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
B9WGX7_CANDC/16-88                  ....TPITVRVHKV.NSTTGSEAERILTSFI.DASEI..........NISGKGTAETNA----........TGISGGNESPAIVSQLKRIQRSLRGLPPLM......
C4R4N5_PICPG/14-88                  ....HPVSINVTGQ.QPLETENVQELLDEFIaKADEE..........TAQELNFMALNDG---........TTATATNNNAAKISQLKRLQRELRGLPPL-l.....
J4U047_SACK1/7-92                   ....TPVVIHATQLpQHVSTDEVLQFLEGFI.NEKENii.....dstTMNVVSDNAAGA---Dvvp..avnASLSMDTNLSSSISQLKRIQRDFKGLPPA-q.....
E7QCX4_YEASZ/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
G8B9X7_CANPC/17-90                  ....TPTAVNVNAV.SSVTQEQAEQFLTQFI.DASEH..........NRNPLNLNDQDQK---........TGFSSNSETVAVASQLKRIQRNLRGLPPL-s.....
C7GX37_YEAS2/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
Q6BWW9_DEBHA/33-111                 ....TPTAVRVEAS.SAIDKSEAETILSDFI.SVSEA..........IAGSLPSSLDSSKITFs......nTGLSSSTGSSAILSQLKRVQRDLRGLPPL-l.....
C4Y5H7_CLAL4/16-92                  ...a-PVVMHVKGV.KAIEKARAEALLTKFI.STSEA..........ISSAIVGSEDPILFTN........TGMASGEGSNPVLGQLKRVQRDLRGLPPL-s.....
G3B5I0_CANTC/16-95                  ....TPTSVVIKSS.KLATQSETERILTAFI.DISES..........VATTVPGQASSSNEILn.....adSGLSNSTGNAAIISQLKRLQRDLRGLPPT-l.....
A6ZYB5_YEAS7/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
S6F307_ZYGB2/18-88                  ....TPIVAHALAPpTHVSHDEMLQFLDKFI.SEREL..........SVSEQNIGADAN----........---GTDVSLSSALSQLKRLQRDFKGLPPS-a.....
C5DMV1_LACTC/43-70                  ..ee----------.----------------.-----..........----------------........----ADADASGALAQLRRVERNFKGLPPA-v.....
H8X8C0_CANO9/17-90                  ....TPTAVNVNAV.SSISQAQAEQLLTQFI.DASEH..........NRNPLNLKDQDQK---........TGFSSNSETIAVASQLKRIQRSLRGLPPL-s.....
H2AR78_KAZAF/18-99                  ....TPITIHKSQRpQHVSKDEVLNFLETFI.TEKESiln....nqsNFDDVTGNTSSTA--G........TIINIDTTLTSSLSQLKRLQRDFKGLPPA-t.....
Q750W5_ASHGO/15-94                  ....QPVVLHVAGPpQHLDKDSALRFLSVFI.EEKETa........aVLGAAGGAVVTSGGVG........SEGGVDTALSSALAQLKRMERDLKGLPPT-i.....
I2JZB1_DEKBR/15-88                  ....HPTTIHAVKA.KSLDKEHVQKYLDDFL.DDYDR..........ILTTSAVSSEGSM---........GLNTYVGPKTTTISQLKRLQRELRGLPPV-i.....
B3LGC7_YEAS1/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
Q6C9A0_YARLI/8-79                   ...g-PTAIEVHSS.KAIPNGEAEEIITQYI.DATTE..........STDQLLSMSSD-----........SMPSVVSRNHAMIQQLRRVQRDLRGLPPL-e.....
M9N7X4_ASHG1/15-94                  ....QPVVLHVAGPpQHLDKDSALRFLSVFI.EEKETa........aVLGAAGGAVVTSGGVG........SEGGVDTALSSALAQLKRMERDLKGLPPT-i.....
W7PXU6_YEASX/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
Q6FVK6_CANGA/45-67                  atgg----------.----------------.-----..........----------------........-----------SLALLKRIQRDFKGLPPQ-t.....
R9XJF5_ASHAC/15-94                  ....QPIVLHVAGPpQHLDKEAALQFLSVFI.EEKETa........aV---LGAADGAVVTSGg.....vgSEGAVDTALSSALAQLKRMERDLKGLPPT-i.....
A3LZG0_PICST/17-95                  ....TPILTKIQTS.SSINNSEAEQILSEFI.YASEA..........VAASFTSSSLVDNEAGs......aTGFSDSAGSNALLSQLKRVQRDLRGLPPL-v.....
G8BR53_TETPH/16-98                  ...s-PVVIHKRGRsQHLNKEEVLAFLDNFI.SEKENll.....eneF--SLSAAQEGGDETAa......gTGNKFDNNLTVSLAQLKRLQRDFKGLPPS-i.....
G3ANE0_SPAPN/16-80                  ....TPTAIRINES.TNITNSDAERALTEFI.DASDA..........IAAGLEQSSKN-----........TGLSKNNDSSAVLSQLKRIQRNL-------......
M3IIU3_CANMX/16-88                  ....TPISIRAHNV.KNVTGSDVERILTEFI.DASEL..........NISGKVTDETKT----........TGLAGNSESPAVLSQLKRIQRSLRGLPPI-i.....
N1PAE4_YEASC/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
W0VL84_ZYGBA/18-88                  ....TPIVAHALAPpTHVSHDEMLQFLDKFI.SEREL..........TVSDQNIGADA-----........--NATDISLSSALSQLKRLHRDFKGLPPS-a.....
A0A024XRE5_YEASX/18-103             ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
G0WGQ4_NAUDC/18-105                 ....TPIVIHTTDQpKHVSKEEVLSFLNNFI.TEKESliq...nnalPLGDAAVTTTSTDGIAs.....gdAMISIDTTLSSSLSQLKRLQRDFKGLPPS-n.....
H0GDH9_SACCK/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
G8JTE9_ERECY/15-97                  ....HPVAIHAVGKpEHFSKSEALKFLSDFI.ESKESthsf..mlnsEANDVAV--------Rsg...gisGDITVDTSLSSVLPQLKRIERDLKGLPPA-i.....
W0TEB1_KLUMA/15-101                 ....TPVVVHQVGTpSYLSKEEVLNFLSTFI.SEKEAipav..slasRAESVTQTSITSG--Gv.....stEEVALDTQLSSALAQLKRVERDFKGLPPQ-v.....
RPA14_YEAST/18-103                  ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
#=GR RPA14_YEAST/18-103       SS    ....S-SEEEESS--EE--HHHHHHHHHHHH.HHHHSSS.....XXXXXXXXXXXXXXXXXXXX.....XXXXXXXXTTHHHHHHHHHHHHHHTTCS-XX-X.....
G8ZXC8_TORDC/15-80                  ...s-PVVVHVGQP.EHVDRDQVLKFLDTFV.ADKEA..........Q---LTVGAD------........--ADADVHLTSALSQLKRIQRDCQGLPPT-v.....
A5DFY4_PICGU/17-93                  ....YPTAIKFLSS.TSVTLEETEREVTHFI.DQTEK..........WKNALPGAQLNGEDLG........VGFSPSGDNSTVLSQLGRIQRDLRGLPPV-v.....
A0A024Y6W8_YEASX/18-103             ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
Q5A4Y4_CANAL/16-88                  ....TPTTVRVHRV.NDTTSSEAERILTSFI.DASEI..........NISGKGTAETNT----........TGISGGNESPAIVSQLKRIQRSLRGLPPLM......
E7LSQ7_YEASV/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii.....dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
G8Y4V2_PICSO/17-94                  ....TPVVTHIKSS.FNLNKEEAESTLAEFI.STSEA..........IISGANGLGSYPKEAS.......qTGLSKVGNNASLLSQLKRIQRELRGLPPL-l.....
#=GC SS_cons                        ....S-SEEEESS--EE--HHHHHHHHHHHH.HHHHSSS.....XXXXXXXXXXXXXXXXXXXX.....XXXXXXXXTTHHHHHHHHHHHHHHTTCS-XX-X.....
#=GC seq_cons                       ....TPlVlHssth.palop-EshpFLpsFI.cp+Es..........shsshsssussst...........oshsh-oshooulSQLKRlQRDh+GLPPs.......
//
DBGET integrated database retrieval system