GenomeNet

Database: Pfam
Entry: RNA_polI_A14
LinkDB: RNA_polI_A14
Original site: RNA_polI_A14 
#=GF ID   RNA_polI_A14
#=GF AC   PF08203.9
#=GF DE   Yeast RNA polymerase I subunit RPA14
#=GF AU   Mistry J, Wood V
#=GF SE   manual
#=GF GA   25.00 25.00;
#=GF TC   25.00 25.10;
#=GF NC   23.40 21.00;
#=GF BM   hmmbuild --amino HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   15647272
#=GF RT   The fission yeast protein, Ker1p, is an ortholog of RNA
#=GF RT   polymerase I subunit A14 in saccharomyces cerevisiae, and is
#=GF RT   required for stable association of Rrn3p and RPA21 in Pol I. 
#=GF RA   Imazawa Y, Hisatake K, Mitsuzawa H, Matsumoto M, Tsukui T,
#=GF RA   Nakagawa K, Nakadai T, Shimada M, Ishihama A, Nogi Y; 
#=GF RL   J Biol Chem 2005; [Epub ahead of print]
#=GF DR   INTERPRO; IPR013239;
#=GF CC   This is a family of yeast proteins.  A14 is one of the final two
#=GF CC   subunits of Saccharomyces cerevisiae RNA polymerase I and is
#=GF CC   proposed to play a role in the recruitment of pol I to the
#=GF CC   promoter [1].
#=GF SQ   49
#=GS C4R4N5_PICPG/14-88       AC C4R4N5.1
#=GS J4U047_SACK1/7-92        AC J4U047.1
#=GS E7QCX4_YEASZ/18-103      AC E7QCX4.1
#=GS Q6FVK6_CANGA/13-52       AC Q6FVK6.1
#=GS G8B9X7_CANPC/17-90       AC G8B9X7.1
#=GS Q6BWW9_DEBHA/33-111      AC Q6BWW9.2
#=GS G3B5I0_CANTC/16-95       AC G3B5I0.1
#=GS C4Y5H7_CLAL4/16-92       AC C4Y5H7.1
#=GS C5MGP9_CANTT/16-88       AC C5MGP9.1
#=GS W6MP54_9ASCO/17-92       AC W6MP54.1
#=GS C5DMV1_LACTC/43-70       AC C5DMV1.1
#=GS S6F307_ZYGB2/18-88       AC S6F307.1
#=GS H2AR78_KAZAF/18-99       AC H2AR78.1
#=GS Q750W5_ASHGO/15-94       AC Q750W5.1
#=GS I2JZB1_DEKBR/15-88       AC I2JZB1.1
#=GS C5DMV1_LACTC/13-52       AC C5DMV1.1
#=GS Q6C9A0_YARLI/8-79        AC Q6C9A0.1
#=GS G0VBU9_NAUCC/18-103      AC G0VBU9.1
#=GS G8Y1X5_PICSO/17-94       AC G8Y1X5.1
#=GS Q6FVK6_CANGA/45-67       AC Q6FVK6.1
#=GS A3LZG0_PICST/17-95       AC A3LZG0.2
#=GS K0KMI5_WICCF/16-84       AC K0KMI5.1
#=GS G8BR53_TETPH/16-98       AC G8BR53.1
#=GS Q6CQJ1_KLULA/15-101      AC Q6CQJ1.1
#=GS G3ANE0_SPAPN/16-80       AC G3ANE0.1
#=GS M3IIU3_CANMX/16-88       AC M3IIU3.1
#=GS E7KAW2_YEASA/18-103      AC E7KAW2.1
#=GS I2GVQ0_TETBL/18-102      AC I2GVQ0.1
#=GS E7KLN7_YEASL/18-103      AC E7KLN7.1
#=GS A0A0H5C0M6_CYBJA/16-79   AC A0A0H5C0M6.1
#=GS G0WGQ4_NAUDC/18-105      AC G0WGQ4.1
#=GS A0A0A8L783_9SACH/15-101  AC A0A0A8L783.1
#=GS A0A0L0NRD8_9ASCO/17-93   AC A0A0L0NRD8.1
#=GS G8JTE9_ERECY/15-97       AC G8JTE9.1
#=GS A7TEM4_VANPO/18-102      AC A7TEM4.1
#=GS RPA14_YEAST/18-103       AC P50106.1
#=GS RPA14_YEAST/18-103       DR PDB; 4C3H D; 18-100;
#=GS RPA14_YEAST/18-103       DR PDB; 4C2M D; 18-100;
#=GS RPA14_YEAST/18-103       DR PDB; 4C3J D; 18-100;
#=GS RPA14_YEAST/18-103       DR PDB; 2RF4 B; 18-101;
#=GS RPA14_YEAST/18-103       DR PDB; 2RF4 D; 18-101;
#=GS RPA14_YEAST/18-103       DR PDB; 4C3I D; 18-100;
#=GS RPA14_YEAST/18-103       DR PDB; 2RF4 F; 18-101;
#=GS RPA14_YEAST/18-103       DR PDB; 4C2M S; 18-100;
#=GS W1QHS4_OGAPD/14-79       AC W1QHS4.1
#=GS G8ZXC8_TORDC/15-80       AC G8ZXC8.1
#=GS E7Q272_YEASB/18-103      AC E7Q272.1
#=GS J7R050_KAZNA/17-106      AC J7R050.1
#=GS A5DFY4_PICGU/17-93       AC A5DFY4.2
#=GS C5DYK3_ZYGRC/18-88       AC C5DYK3.1
#=GS A0A0F4X8R0_HANUV/15-112  AC A0A0F4X8R0.1
#=GS Q5A4Y4_CANAL/16-88       AC Q5A4Y4.1
#=GS E7LSQ7_YEASV/18-103      AC E7LSQ7.1
#=GS A5E260_LODEL/17-90       AC A5E260.1
#=GS E7NFS4_YEASO/18-103      AC E7NFS4.1
#=GS A0A099P758_PICKU/91-164  AC A0A099P758.1
#=GS G8Y4V2_PICSO/17-94       AC G8Y4V2.1
C4R4N5_PICPG/14-88                  ....HPVSINVTGQ.QPLETENVQELLDEFIaKADEE.....................TAQELNFMALNDG---........TTATATNNNAAKISQLKRLQRELRGLPPL-l.....
J4U047_SACK1/7-92                   ....TPVVIHATQLpQHVSTDEVLQFLEGFI.NEKENii................dstTMNVVSDNAAGA---Dvvp..avnASLSMDTNLSSSISQLKRIQRDFKGLPPA-q.....
E7QCX4_YEASZ/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii................dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
Q6FVK6_CANGA/13-52                  ...g-PVVVKQRGVpQHVSREEMLAFLDKFV.QQKED.....................AT--------------........------------------------------ggslal
G8B9X7_CANPC/17-90                  ....TPTAVNVNAV.SSVTQEQAEQFLTQFI.DASEH.....................NRNPLNLNDQDQK---........TGFSSNSETVAVASQLKRIQRNLRGLPPL-s.....
Q6BWW9_DEBHA/33-111                 ....TPTAVRVEAS.SAIDKSEAETILSDFI.SVSEA.....................IAGSLPSSLDSSKITFs......nTGLSSSTGSSAILSQLKRVQRDLRGLPPL-l.....
G3B5I0_CANTC/16-95                  ....TPTSVVIKSS.KLATQSETERILTAFI.DISES.....................VATTVPGQASSSNEILn.....adSGLSNSTGNAAIISQLKRLQRDLRGLPPT-l.....
C4Y5H7_CLAL4/16-92                  ...a-PVVMHVKGV.KAIEKARAEALLTKFI.STSEA.....................ISSAIVGSEDPILFTN........TGMASGEGSNPVLGQLKRVQRDLRGLPPL-s.....
C5MGP9_CANTT/16-88                  ....TPTSIRLLKI.NNLGASEAERALSEFI.DASEL.....................NISGKATTDFNT----........TGLAGNSESPAVLSQLKRIQRSLRGLPPV-i.....
W6MP54_9ASCO/17-92                  ....TPVVAHVAAI.RVIEDDQAQVILSNFI.DQCEK.....................LEEESLSTTLNSE-GG........SRTTYSGPPSEKVSHLKRLQRELRGLPPL-l.....
C5DMV1_LACTC/43-70                  ..ee----------.----------------.-----.....................----------------........----ADADASGALAQLRRVERNFKGLPPA-v.....
S6F307_ZYGB2/18-88                  ....TPIVAHALAPpTHVSHDEMLQFLDKFI.SEREL.....................SVSEQNIGADAN----........---GTDVSLSSALSQLKRLQRDFKGLPPS-a.....
H2AR78_KAZAF/18-99                  ....TPITIHKSQRpQHVSKDEVLNFLETFI.TEKESiln...............nqsNFDDVTGNTSSTA--G........TIINIDTTLTSSLSQLKRLQRDFKGLPPA-t.....
Q750W5_ASHGO/15-94                  ....QPVVLHVAGPpQHLDKDSALRFLSVFI.EEKETa...................aVLGAAGGAVVTSGGVG........SEGGVDTALSSALAQLKRMERDLKGLPPT-i.....
I2JZB1_DEKBR/15-88                  ....HPTTIHAVKA.KSLDKEHVQKYLDDFL.DDYDR.....................ILTTSAVSSEGSM---........GLNTYVGPKTTTISQLKRLQRELRGLPPV-i.....
C5DMV1_LACTC/13-52                  ....HPVVMHAGPR.EHVSQEQAMQFLGRFI.REREE.....................EADA------------........------------------------------dasga.
Q6C9A0_YARLI/8-79                   ...g-PTAIEVHSS.KAIPNGEAEEIITQYI.DATTE.....................STDQLLSMSSD-----........SMPSVVSRNHAMIQQLRRVQRDLRGLPPL-e.....
G0VBU9_NAUCC/18-103                 ....TPVVIHTTAQpQHVNKDDVLKFLDKFI.TEKENliq..............nstvALGSAEGTAAVGGDAA.......tALLSIDTTLSSSLSQLKRLQRDFKGLPPA-s.....
G8Y1X5_PICSO/17-94                  ....TPVVTHIKSS.SNLSKEEAESTLAEFI.STSEA.....................IISGANGLGSYPKEAS.......qTGLSKEGNNASLLSQLKRIQRELRGLPPL-l.....
Q6FVK6_CANGA/45-67                  atgg----------.----------------.-----.....................----------------........-----------SLALLKRIQRDFKGLPPQ-t.....
A3LZG0_PICST/17-95                  ....TPILTKIQTS.SSINNSEAEQILSEFI.YASEA.....................VAASFTSSSLVDNEAGs......aTGFSDSAGSNALLSQLKRVQRDLRGLPPL-v.....
K0KMI5_WICCF/16-84                  ....TPVTVHLLGS.KALDKEETERFLTKFI.DGEET.....................RSNAKLLNSSGA----........----TASTAGASVSQLKRIQRDLRGLPPL-e.....
G8BR53_TETPH/16-98                  ...s-PVVIHKRGRsQHLNKEEVLAFLDNFI.SEKENll................eneF--SLSAAQEGGDETAa......gTGNKFDNNLTVSLAQLKRLQRDFKGLPPS-i.....
Q6CQJ1_KLULA/15-101                 ....TPVVVHTVGTpTYLSKDEVLQFLASFI.AEKESvpg...............vtlASSGASTTQGAVTSGGi.....saDEMALDTQLSSALAQLKRVERDFKGLPPQ-v.....
G3ANE0_SPAPN/16-80                  ....TPTAIRINES.TNITNSDAERALTEFI.DASDA.....................IAAGLEQSSKN-----........TGLSKNNDSSAVLSQLKRIQRNL-------......
M3IIU3_CANMX/16-88                  ....TPISIRAHNV.KNVTGSDVERILTEFI.DASEL.....................NISGKVTDETKT----........TGLAGNSESPAVLSQLKRIQRSLRGLPPI-i.....
E7KAW2_YEASA/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii................dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
I2GVQ0_TETBL/18-102                 ....TPITIHTTSSpQHVSHDEVLQFLEKFI.NEKETdiag.............tasfSVSDITTESESGD-TT........QSNTIDTNLISAVSQLKRIQRDFKGLPPSM......
E7KLN7_YEASL/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii................dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
A0A0H5C0M6_CYBJA/16-79              ....TPITTHLNSSvSLQGKEAVERFLTAFL.DDEEQ.....................R--QVGQK--------........---VLNSNNTSVISQLKRIQRDLRGLP---se....
G0WGQ4_NAUDC/18-105                 ....TPIVIHTTDQpKHVSKEEVLSFLNNFI.TEKESliq..............nnalPLGDAAVTTTSTDGIAs.....gdAMISIDTTLSSSLSQLKRLQRDFKGLPPS-n.....
A0A0A8L783_9SACH/15-101             ....TPVVVHSVGEpSYLSKEEILQFLSTFI.ADKETvps...............vtlSSNDAAINQGSVTSGGi.....gaDEMALDTQLSSALAQLKRVERDFKGLPPQ-v.....
A0A0L0NRD8_9ASCO/17-93              ....KPVLIEIKGE.KSIDKVRAEALLTKFI.NTSEA.....................ISSAIPGSDDPVVFSN........TGFSSNVGTNPKIGQLKRVQRELRGLPPL-l.....
G8JTE9_ERECY/15-97                  ....HPVAIHAVGKpEHFSKSEALKFLSDFI.ESKESthsf.............mlnsEANDVAV--------Rsg...gisGDITVDTSLSSVLPQLKRIERDLKGLPPA-i.....
A7TEM4_VANPO/18-102                 ....TPIVIHEIAEpQYVSKDQVLKFLETFI.DSKETlv.................snVSTSIGVESSSMIQPAl.....dnAMQSVDTNLTSSLSQLKRLQRDFKGLPPAM......
RPA14_YEAST/18-103                  ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii................dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
#=GR RPA14_YEAST/18-103       SS    ....S-SEEEESS--EE--HHHHHHHHHHHH.HHHHSSS................--------------------.....--------TTHHHHHHHHHHHHHHTTCS-XX-X.....
W1QHS4_OGAPD/14-79                  ...s-PVVASVHAA.VALSSDETQQMLDQFI.SECDH.....................L----EATAMD-----........--KSYHGPDSTTLSQLKRLQRELRGLPPL-l.....
G8ZXC8_TORDC/15-80                  ...s-PVVVHVGQP.EHVDRDQVLKFLDTFV.ADKEA.....................Q---LTVGAD------........--ADADVHLTSALSQLKRIQRDCQGLPPT-v.....
E7Q272_YEASB/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii................dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
J7R050_KAZNA/17-106                 ....TPVSIHRVGKpKHVSKDEILSFLDTFI.TEKEAvvdts...........vgnagVAATAGSDG------ApgsvasltGLITVDTNLTSAVSQLRRIQRDFKGLPPA-a.....
A5DFY4_PICGU/17-93                  ....YPTAIKFLSS.TSVTLEETEREVTHFI.DQTEK.....................WKNALPGAQLNGEDLG........VGFSPSGDNSTVLSQLGRIQRDLRGLPPV-v.....
C5DYK3_ZYGRC/18-88                  ...s-PIVAHTNGTpQHVSRDEMLQFLERFI.SEKET.....................----LGGDQALGT---........DAASSDISLSSALSQLKRVQRDFQGLPPS-a.....
A0A0F4X8R0_HANUV/15-112             ....QPISIEVISEpVPLTESDMLEFLGQLI.SEREKyiseqqeqiyseqkdvdaevpE-----TNEENQPEVMst....anARISQISNANQYISQLNRMERSLKGFPPS-v.....
Q5A4Y4_CANAL/16-88                  ....TPTTVRVHRV.NDTTSSEAERILTSFI.DASEI.....................NISGKGTAETNT----........TGISGGNESPAIVSQLKRIQRSLRGLPPLM......
E7LSQ7_YEASV/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii................dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
A5E260_LODEL/17-90                  ....TPTTVRVRSS.SLIPQSQAESLLTEFI.DASEF.....................NNNPVNQEPQSQK---........SGMASNSGNAAVLSQLRRIQRNLRGLPPL-e.....
E7NFS4_YEASO/18-103                 ....TPVVIHATQLpQHVSTDEVLQFLESFI.DEKENii................dstTMNTISGNAADADAAAv.....anTSLNIDTNLSSSISQLKRIQRDFKGLPPA-q.....
A0A099P758_PICKU/91-164             ...n-PTLFKVMESqTFLQDETVLSYVDEFI.NKHPL.....................N--SLQSGSSEIA--T........GSSTYSGINPTVLSQLNRLQRSLRGLPPL-f.....
G8Y4V2_PICSO/17-94                  ....TPVVTHIKSS.FNLNKEEAESTLAEFI.STSEA.....................IISGANGLGSYPKEAS.......qTGLSKVGNNASLLSQLKRIQRELRGLPPL-l.....
#=GC SS_cons                        ....S-SEEEESS--EE--HHHHHHHHHHHH.HHHHSSS................--------------------.....--------TTHHHHHHHHHHHHHHTTCS-XX-X.....
#=GC seq_cons                       ....TPlslHsps..pplsp-Es.paLspFI.sppEs.....................hhsshsssstss............sthshsss.suslSQLKRlQRDh+GLPPh.......
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