GenomeNet

Database: Pfam
Entry: RNA_polI_A14
LinkDB: RNA_polI_A14
Original site: RNA_polI_A14 
#=GF ID   RNA_polI_A14
#=GF AC   PF08203.6
#=GF DE   Yeast RNA polymerase I subunit RPA14
#=GF AU   Mistry J, Wood V
#=GF SE   manual
#=GF GA   25.00 25.00;
#=GF TC   58.30 54.90;
#=GF NC   21.10 19.70;
#=GF BM   hmmbuild --amino HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   15647272
#=GF RT   The fission yeast protein, Ker1p, is an ortholog of RNA
#=GF RT   polymerase I subunit A14 in saccharomyces cerevisiae, and is
#=GF RT   required for stable association of Rrn3p and RPA21 in Pol I. 
#=GF RA   Imazawa Y, Hisatake K, Mitsuzawa H, Matsumoto M, Tsukui T,
#=GF RA   Nakagawa K, Nakadai T, Shimada M, Ishihama A, Nogi Y; 
#=GF RL   J Biol Chem 2005; [Epub ahead of print]
#=GF DR   INTERPRO; IPR013239;
#=GF CC   This is a family of yeast proteins.  A14 is one of the final two
#=GF CC   subunits of Saccharomyces cerevisiae RNA polymerase I and is
#=GF CC   proposed to play a role in the recruitment of pol I to the
#=GF CC   promoter [1].
#=GF SQ   47
#=GS A3LZG0_PICST/17-96   AC A3LZG0.2
#=GS C5MGP9_CANTT/16-89   AC C5MGP9.1
#=GS C4Y5H7_CLAL4/16-93   AC C4Y5H7.1
#=GS H0GST6_9SACH/51-137  AC H0GST6.1
#=GS C5DYK3_ZYGRC/18-89   AC C5DYK3.1
#=GS C8Z571_YEAS8/18-104  AC C8Z571.1
#=GS B9WGX7_CANDC/16-89   AC B9WGX7.1
#=GS A5E260_LODEL/17-91   AC A5E260.1
#=GS C7GX37_YEAS2/18-104  AC C7GX37.1
#=GS E7KLN7_YEASL/18-104  AC E7KLN7.1
#=GS C5DMV1_LACTC/13-71   AC C5DMV1.1
#=GS E7NFS4_YEASO/18-104  AC E7NFS4.1
#=GS B6K0T8_SCHJY/5-72    AC B6K0T8.1
#=GS A7TEM4_VANPO/18-103  AC A7TEM4.1
#=GS G0WGQ4_NAUDC/18-106  AC G0WGQ4.1
#=GS E7QCX4_YEASZ/18-104  AC E7QCX4.1
#=GS B3LGC7_YEAS1/18-104  AC B3LGC7.1
#=GS G0VBU9_NAUCC/18-104  AC G0VBU9.1
#=GS E7Q272_YEASB/18-104  AC E7Q272.1
#=GS C4R4N5_PICPG/14-89   AC C4R4N5.1
#=GS G2WAQ5_YEASK/18-104  AC G2WAQ5.1
#=GS RPA14_YEAST/18-104   AC P50106.1
#=GS RPA14_YEAST/18-104   DR PDB; 2RF4 F; 18-101;
#=GS RPA14_YEAST/18-104   DR PDB; 2RF4 D; 18-101;
#=GS RPA14_YEAST/18-104   DR PDB; 2RF4 B; 18-101;
#=GS G8Y1X5_PICSO/17-95   AC G8Y1X5.1
#=GS H0GDH9_9SACH/18-104  AC H0GDH9.1
#=GS H2AR78_KAZAF/18-100  AC H2AR78.1
#=GS Q750W5_ASHGO/15-95   AC Q750W5.1
#=GS Q5A4Y4_CANAL/16-89   AC Q5A4Y4.1
#=GS G3ANE0_SPAPN/16-80   AC G3ANE0.1
#=GS G8JTE9_ERECY/15-98   AC G8JTE9.1
#=GS G8BR53_TETPH/16-99   AC G8BR53.1
#=GS A5DFY4_PICGU/17-94   AC A5DFY4.2
#=GS E7LSQ7_YEASV/18-104  AC E7LSQ7.1
#=GS E7KAW2_YEASA/18-104  AC E7KAW2.1
#=GS Q6FVK6_CANGA/13-68   AC Q6FVK6.1
#=GS G8B9X7_CANPC/17-91   AC G8B9X7.1
#=GS G8Y4V2_PICSO/17-95   AC G8Y4V2.1
#=GS A6ZYB5_YEAS7/18-104  AC A6ZYB5.1
#=GS G8ZXC8_TORDC/15-81   AC G8ZXC8.1
#=GS F2QWB2_PICP7/14-89   AC F2QWB2.1
#=GS H8X8C0_9ASCO/17-91   AC H8X8C0.1
#=GS RPA14_SCHPO/5-78     AC Q9P7P1.1
#=GS Q6BWW9_DEBHA/33-112  AC Q6BWW9.2
#=GS B5VG50_YEAS6/12-98   AC B5VG50.1
#=GS G3B5I0_CANTC/16-96   AC G3B5I0.1
#=GS Q6CQJ1_KLULA/15-102  AC Q6CQJ1.1
#=GS C4YQS9_CANAW/16-89   AC C4YQS9.1
#=GS Q6C9A0_YARLI/8-80    AC Q6C9A0.1
A3LZG0_PICST/17-96              .TPILTKIQTS.SSINNSEAEQILSEFIYASEAV..........AASFTSSSLVd...nEAg....sATGFSDSAGSNALLSQLKRVQRDLRGL.............PPLV-a..
C5MGP9_CANTT/16-89              .TPTSIRLLKI.NNLGASEAERALSEFIDASELN..........ISGKATTDFN.....--......TTGLAGNSESPAVLSQLKRIQRSLRGL.............PPVI-s..
C4Y5H7_CLAL4/16-93              a-PVVMHVKGV.KAIEKARAEALLTKFISTSEAI..........SSAIVGSEDP.....ILf....tNTGMASGEGSNPVLGQLKRVQRDLRGL.............PPLS-s..
H0GST6_9SACH/51-137             .TPVVIHATQLpQHVSTDEVLQFLEGFINEKENIidst.ttnvvSDNAAG----.....-AdvvpavNASLSMDTNLSSSLSQLKRIQRDFKGL.............PP---pkt
C5DYK3_ZYGRC/18-89              s-PIVAHTNGTpQHVSRDEMLQFLERFISEKETL..........------GGDQ.....AL.....gTDAASSDISLSSALSQLKRVQRDFQGL.............PPS--al.
C8Z571_YEAS8/18-104             .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
B9WGX7_CANDC/16-89              .TPITVRVHKV.NSTTGSEAERILTSFIDASEIN..........ISGKGTAETN.....--......ATGISGGNESPAIVSQLKRIQRSLRGL.............PPLMS...
A5E260_LODEL/17-91              .TPTTVRVRSS.SLIPQSQAESLLTEFIDASEFN..........-NNPVNQEPQ.....SQ......KSGMASNSGNAAVLSQLRRIQRNLRGL.............PPLE-p..
C7GX37_YEAS2/18-104             .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
E7KLN7_YEASL/18-104             .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
C5DMV1_LACTC/13-71              .HPVVMHAGPR.EHVSQEQAMQFLGRFIREREEE..........----------.....--......-----ADADASGALAQLRRVERNFKGL.............PPAV-l..
E7NFS4_YEASO/18-104             .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
B6K0T8_SCHJY/5-72               .CPPPIRIGKR.QPLGLDDAAGILERYIGVLSKF..........----------.....--......---QDDKSGNESIVAQLNRVCAFLQGKelp......lpviPPTT-t..
A7TEM4_VANPO/18-103             .TPIVIHEIAEpQYVSKDQVLKFLETFIDSKETLvs.....nvsTSIGVESSSMi...qPAl....dNAMQSVDTNLTSSLSQLKRLQRDFKGL.............PPAM-a..
G0WGQ4_NAUDC/18-106             .TPIVIHTTDQpKHVSKEEVLSFLNNFITEKESLiqnnalplgdAAVTTTSTDG.....IAs....gDAMISIDTTLSSSLSQLKRLQRDFKGL.............PPS--nl.
E7QCX4_YEASZ/18-104             .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
B3LGC7_YEAS1/18-104             .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
G0VBU9_NAUCC/18-104             .TPVVIHTTAQpQHVNKDDVLKFLDKFITEKENLiqns..tvalG----SAEGTaavggDA.....aTALLSIDTTLSSSLSQLKRLQRDFKGL.............PPAS-m..
E7Q272_YEASB/18-104             .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
C4R4N5_PICPG/14-89              .HPVSINVTGQ.QPLETENVQELLDEFIAKADEE..........----TAQELNf...mALn....dGTTATATNNNAAKISQLKRLQRELRGL.............PPLL-d..
G2WAQ5_YEASK/18-104             .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
RPA14_YEAST/18-104              .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
#=GR RPA14_YEAST/18-104   SS    .---EEEESS--EE--HHHHHHHHHHHHHHHHSSS-X....XXXXXXXXXXXXXX...XXXX....XXXXXX--TTHHHHHHHHHHHHHHHHHS.............--XX-X..
G8Y1X5_PICSO/17-95              .TPVVTHIKSS.SNLSKEEAESTLAEFISTSEAI..........ISGANGLGSYp...kEA.....sQTGLSKEGNNASLLSQLKRIQRELRGL.............PPL--lv.
H0GDH9_9SACH/18-104             .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
H2AR78_KAZAF/18-100             .TPITIHKSQRpQHVSKDEVLNFLETFITEKESI..........LNNQSNFDDVtgntsST.....aGTIINIDTTLTSSLSQLKRLQRDFKGL.............PPAT-f..
Q750W5_ASHGO/15-95              .QPVVLHVAGPpQHLDKDSALRFLSVFIEEKETA..........AVLGAAGGAVv...tSGg....vGSEGGVDTALSSALAQLKRMERDLKGL.............PPTI-l..
Q5A4Y4_CANAL/16-89              .TPTTVRVHRV.NDTTSSEAERILTSFIDASEIN..........ISGKGTAETN.....--......TTGISGGNESPAIVSQLKRIQRSLRGL.............PPLMS...
G3ANE0_SPAPN/16-80              .TPTAIRINES.TNITNSDAERALTEFIDASDAI..........AAGLEQSSK-.....--......NTGLSKNNDSSAVLSQLKRIQRNL---.............-----...
G8JTE9_ERECY/15-98              .HPVAIHAVGKpEHFSKSEALKFLSDFIESKEST..........HSFMLNSEANdvavrSGg....iSGDITVDTSLSSVLPQLKRIERDLKGL.............PPAI-l..
G8BR53_TETPH/16-99              s-PVVIHKRGRsQHLNKEEVLAFLDNFISEKENLlen....efsL--SAAQ--EggdetAA......GTGNKFDNNLTVSLAQLKRLQRDFKGL.............PPS--iv.
A5DFY4_PICGU/17-94              .YPTAIKFLSS.TSVTLEETEREVTHFIDQTEKW..........KNALPGAQLNg...eDL......GVGFSPSGDNSTVLSQLGRIQRDLRGL.............PPVV-s..
E7LSQ7_YEASV/18-104             .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
E7KAW2_YEASA/18-104             .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
Q6FVK6_CANGA/13-68              g-PVVVKQRGVpQHVSREEMLAFLDKFVQQKEDA..........----------.....--......---------TGGSLALLKRIQRDFKGL.............PPQTE...
G8B9X7_CANPC/17-91              .TPTAVNVNAV.SSVTQEQAEQFLTQFIDASEHN..........-RNPLNLNDQ.....DQ......KTGFSSNSETVAVASQLKRIQRNLRGL.............PPLS-t..
G8Y4V2_PICSO/17-95              .TPVVTHIKSS.FNLNKEEAESTLAEFISTSEAI..........ISGANGLGSYp...kEA.....sQTGLSKVGNNASLLSQLKRIQRELRGL.............PPL--lv.
A6ZYB5_YEAS7/18-104             .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
G8ZXC8_TORDC/15-81              s-PVVVHVGQP.EHVDRDQVLKFLDTFVADKEAQ..........---L------.....-T.....vGADADADVHLTSALSQLKRIQRDCQGL.............PPTV-l..
F2QWB2_PICP7/14-89              .HPVSINVTGQ.QPLETENVQELLDEFIAKADEE..........----TAQELNf...mALn....dGTTATATNNNAAKISQLKRLQRELRGL.............PPLL-d..
H8X8C0_9ASCO/17-91              .TPTAVNVNAV.SSISQAQAEQLLTQFIDASEHN..........-RNPLNLKDQ.....DQ......KTGFSSNSETIAVASQLKRIQRSLRGL.............PPLS-t..
RPA14_SCHPO/5-78                .CPPKMILRKS.EKLDKDASSKFLNRYIQTIERF..........----------.....--......---QDEKSGSESVLSQLNRVLMYLKGEeiplislnlpvqgPPTE-e..
Q6BWW9_DEBHA/33-112             .TPTAVRVEAS.SAIDKSEAETILSDFISVSEAI..........AGSLPSSLDSs...kITf....sNTGLSSSTGSSAILSQLKRVQRDLRGL.............PPLL-s..
B5VG50_YEAS6/12-98              .TPVVIHATQLpQHVSTDEVLQFLESFIDEKENIids....ttmNTISGNAADAd...aAAv....aNTSLNIDTNLSSSISQLKRIQRDFKGL.............PPAQ-d..
G3B5I0_CANTC/16-96              .TPTSVVIKSS.KLATQSETERILTAFIDISESV..........ATTVPGQASSsneilNA......DSGLSNSTGNAAIISQLKRLQRDLRGL.............PPTL-t..
Q6CQJ1_KLULA/15-102             .TPVVVHTVGTpTYLSKDEVLQFLASFIAEKESVpgv...tlasSGASTTQGAV....tSGg...isADEMALDTQLSSALAQLKRVERDFKGL.............PPQV-m..
C4YQS9_CANAW/16-89              .TPTTVRVHRV.NDTTSSEAERILTSFIDASEIN..........ISGKGTAETN.....--......TTGISGGNESPAIVSQLKRIQRSLRGL.............PPLMS...
Q6C9A0_YARLI/8-80               g-PTAIEVHSS.KAIPNGEAEEIITQYIDATTES..........TDQLLSMSS-.....--......DSMPSVVSRNHAMIQQLRRVQRDLRGL.............PPLE-a..
#=GC SS_cons                    .---EEEESS--EE--HHHHHHHHHHHHHHHHSSS-X....XXXXXXXXXXXXXX...XXXX....XXXXXX--TTHHHHHHHHHHHHHHHHHS.............--XX-X..
#=GC seq_cons                   .TPlllHssph.pplop-Es.pFLppFIcppEsl...........sh.ssstss.....ss.....ssTuhshcoshooslSQLKRIQRDh+GL.............PPs..s..
//
DBGET integrated database retrieval system