#=GF ID RNase_H_2
#=GF AC PF13482.1
#=GF DE RNase_H superfamily
#=GF AU Coggill P
#=GF SE Jackhmmer:D2BIZ8
#=GF GA 21.70 21.70;
#=GF TC 21.70 21.70;
#=GF NC 21.60 21.60;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Domain
#=GF SQ 1043
#=GS A1TDJ7_MYCVP/322-510 AC A1TDJ7.1
#=GS A3YU16_9SYNE/305-493 AC A3YU16.1
#=GS E6DHY2_PROAA/385-577 AC E6DHY2.1
#=GS I0WPQ9_9NOCA/316-505 AC I0WPQ9.1
#=GS G4D5C2_9FIRM/1-157 AC G4D5C2.1
#=GS B4VJ96_9CYAN/370-541 AC B4VJ96.1
#=GS H7DCN2_9CLOT/4-175 AC H7DCN2.1
#=GS B0RZY3_FINM2/6-161 AC B0RZY3.1
#=GS E9KIF7_9CAUD/2-188 AC E9KIF7.1
#=GS A2BUQ8_PROM5/268-441 AC A2BUQ8.1
#=GS B8GSG2_THISH/317-494 AC B8GSG2.1
#=GS Q7D8I6_MYCTU/320-510 AC Q7D8I6.1
#=GS A0L751_MAGSM/316-493 AC A0L751.1
#=GS D9S2F7_THEOJ/97-266 AC D9S2F7.1
#=GS G6BNQ9_CLODI/4-184 AC G6BNQ9.1
#=GS B0NYV5_9CLOT/9-175 AC B0NYV5.1
#=GS F7ZP66_CLOAT/35-204 AC F7ZP66.1
#=GS A5H1K5_9CAUD/24-176 AC A5H1K5.1
#=GS G9QP18_9BACI/107-277 AC G9QP18.1
#=GS G7GK20_9ACTO/408-600 AC G7GK20.1
#=GS C1IA62_9CLOT/23-199 AC C1IA62.1
#=GS B1KYU6_CLOBM/25-205 AC B1KYU6.1
#=GS D4LGN5_9FIRM/34-203 AC D4LGN5.1
#=GS C9XRC4_CLODC/4-184 AC C9XRC4.1
#=GS I0RIG7_MYCXE/312-500 AC I0RIG7.1
#=GS B8HHW3_ARTCA/328-518 AC B8HHW3.1
#=GS Q3BZM8_XANC5/296-471 AC Q3BZM8.1
#=GS C2BDE3_9FIRM/18-181 AC C2BDE3.1
#=GS H6ND73_9BACL/234-404 AC H6ND73.1
#=GS H7D2Q2_9CLOT/4-175 AC H7D2Q2.1
#=GS Q2FNC2_METHJ/185-351 AC Q2FNC2.1
#=GS B7AU13_9FIRM/20-189 AC B7AU13.1
#=GS A0LIY3_SYNFM/793-943 AC A0LIY3.1
#=GS Q2IHC0_ANADE/87-234 AC Q2IHC0.1
#=GS G4CVK9_9ACTO/385-577 AC G4CVK9.1
#=GS C0CI68_9FIRM/30-199 AC C0CI68.1
#=GS C4ML39_9CAUD/27-210 AC C4ML39.1
#=GS C7NNV8_HALUD/85-237 AC C7NNV8.1
#=GS A6LKD4_THEM4/230-386 AC A6LKD4.1
#=GS I0UA36_BACTR/104-274 AC I0UA36.1
#=GS C0XNJ8_9CORY/313-490 AC C0XNJ8.1
#=GS F2JRP7_CELLD/11-175 AC F2JRP7.1
#=GS E9T8B6_COREQ/320-506 AC E9T8B6.1
#=GS E6CK92_PROAA/385-577 AC E6CK92.1
#=GS F5YLW4_TREPZ/117-312 AC F5YLW4.1
#=GS Q08V28_STIAD/88-240 AC Q08V28.1
#=GS Q8F725_LEPIN/86-235 AC Q8F725.2
#=GS G5IEE9_9CLOT/26-195 AC G5IEE9.1
#=GS H0JUR1_9NOCA/323-512 AC H0JUR1.1
#=GS B0RA14_HALS3/272-448 AC B0RA14.1
#=GS A7FSY5_CLOB1/25-205 AC A7FSY5.1
#=GS E4CM40_PROAA/385-577 AC E4CM40.1
#=GS G9X8Y6_9FIRM/17-181 AC G9X8Y6.1
#=GS D5DD40_BACMD/104-274 AC D5DD40.1
#=GS F0BJD6_9XANT/84-259 AC F0BJD6.1
#=GS G2DZ15_9GAMM/140-310 AC G2DZ15.1
#=GS G6X8G2_MYCAB/313-504 AC G6X8G2.1
#=GS D3G0T7_BACPE/119-290 AC D3G0T7.1
#=GS Q6A6F1_PROAC/385-577 AC Q6A6F1.1
#=GS B0VFR3_CLOAI/85-256 AC B0VFR3.1
#=GS B9K728_THENN/247-394 AC B9K728.1
#=GS I0WZ68_9NOCA/317-509 AC I0WZ68.1
#=GS G9WTU4_9FIRM/34-203 AC G9WTU4.1
#=GS D1RGJ1_LEGLO/317-501 AC D1RGJ1.1
#=GS H0U5V0_BRELA/132-303 AC H0U5V0.1
#=GS E0DE28_9CORY/303-489 AC E0DE28.1
#=GS D5UQ05_TSUPD/276-468 AC D5UQ05.1
#=GS E1K1B9_DESFR/87-236 AC E1K1B9.1
#=GS D2ZRM2_METSM/179-345 AC D2ZRM2.1
#=GS D8KQD3_CORPF/316-508 AC D8KQD3.1
#=GS G2N790_MYCTU/312-502 AC G2N790.1
#=GS D2EBS6_9CAUD/78-260 AC D2EBS6.1
#=GS A6TQ90_ALKMQ/28-197 AC A6TQ90.1
#=GS A9KNV6_CLOPH/30-227 AC A9KNV6.1
#=GS E8RGY0_DESPD/798-947 AC E8RGY0.1
#=GS Q9WXW1_THEMA/239-388 AC Q9WXW1.1
#=GS C6JAH7_9FIRM/12-181 AC C6JAH7.1
#=GS E4ATE4_PROAA/385-577 AC E4ATE4.1
#=GS Q2JK26_SYNJB/335-508 AC Q2JK26.1
#=GS Q896N1_CLOTE/34-212 AC Q896N1.1
#=GS D4KXR3_9FIRM/26-128 AC D4KXR3.1
#=GS D4GZ44_HALVD/85-235 AC D4GZ44.1
#=GS E5VGD3_9FIRM/9-175 AC E5VGD3.1
#=GS A6GY64_FLAPJ/31-160 AC A6GY64.1
#=GS F1D0G1_9CAUD/4-174 AC F1D0G1.1
#=GS Q6WYP5_BPT7/2-186 AC Q6WYP5.1
#=GS D8GJR2_CLOLD/32-210 AC D8GJR2.1
#=GS H7FAB9_9CLOT/4-175 AC H7FAB9.1
#=GS D1Y7C0_9BACT/2-173 AC D1Y7C0.1
#=GS D1CG55_THET1/63-235 AC D1CG55.1
#=GS E4GPQ4_PROAA/385-577 AC E4GPQ4.1
#=GS A8F4L1_THELT/241-404 AC A8F4L1.1
#=GS B0RLR0_XANCB/305-480 AC B0RLR0.1
#=GS B9E1W6_CLOK1/26-194 AC B9E1W6.1
#=GS F2F6Q2_SOLSS/100-269 AC F2F6Q2.1
#=GS G5EU66_9ACTO/385-577 AC G5EU66.1
#=GS H2J3G9_MARPK/209-367 AC H2J3G9.1
#=GS B1V4Z2_CLOPF/32-211 AC B1V4Z2.1
#=GS H0I8F9_9MYCO/313-504 AC H0I8F9.1
#=GS G1DI91_9CAUD/6-190 AC G1DI91.1
#=GS Q7VDQ9_PROMA/302-484 AC Q7VDQ9.1
#=GS F0T833_METSL/146-312 AC F0T833.1
#=GS A4FJR6_SACEN/299-483 AC A4FJR6.1
#=GS A4F5W6_SACEN/341-531 AC A4F5W6.1
#=GS I0R5X8_9FIRM/26-195 AC I0R5X8.1
#=GS E4FCK5_PROAA/385-577 AC E4FCK5.1
#=GS H7DN15_9CLOT/4-175 AC H7DN15.1
#=GS Q9CC95_MYCLE/313-503 AC Q9CC95.1
#=GS Q1B4W0_MYCSS/316-504 AC Q1B4W0.1
#=GS A0LCB8_MAGSM/120-289 AC A0LCB8.1
#=GS Q73WX7_MYCPA/315-505 AC Q73WX7.1
#=GS F5ZII2_STRPW/4-182 AC F5ZII2.1
#=GS F8DYH7_CORRG/367-561 AC F8DYH7.1
#=GS G7U7B4_PROAA/385-577 AC G7U7B4.1
#=GS G4EES4_9BACL/130-300 AC G4EES4.1
#=GS A5UWK3_ROSS1/3-152 AC A5UWK3.1
#=GS D5PG97_9MYCO/312-502 AC D5PG97.1
#=GS E4AJ59_PROAA/385-577 AC E4AJ59.1
#=GS F4XI34_9CYAN/322-493 AC F4XI34.1
#=GS B0SC93_LEPBA/93-243 AC B0SC93.1
#=GS F7PI26_9EURY/31-211 AC F7PI26.1
#=GS E2S3L6_9CORY/266-443 AC E2S3L6.1
#=GS G4DG63_9GAMM/172-341 AC G4DG63.1
#=GS H0JVG1_9NOCA/514-707 AC H0JVG1.1
#=GS F6M893_9CAUD/6-190 AC F6M893.1
#=GS B4AKN9_BACPU/108-278 AC B4AKN9.1
#=GS C5URD9_CLOBO/32-210 AC C5URD9.1
#=GS C6W953_ACTMD/317-501 AC C6W953.1
#=GS F1D018_9CAUD/4-174 AC F1D018.1
#=GS B7ICS2_THEAB/238-395 AC B7ICS2.1
#=GS Q7WIM2_BORBR/321-498 AC Q7WIM2.1
#=GS Q055B3_LEPBL/86-235 AC Q055B3.1
#=GS A1T444_MYCVP/326-505 AC A1T444.1
#=GS A9GW08_SORC5/133-314 AC A9GW08.1
#=GS E0N0P7_9CORY/291-468 AC E0N0P7.1
#=GS H8L0K0_FRAAD/108-278 AC H8L0K0.1
#=GS D8J691_HALJB/88-238 AC D8J691.1
#=GS Q6AE19_LEIXX/189-378 AC Q6AE19.1
#=GS C3JTL9_RHOER/313-505 AC C3JTL9.1
#=GS B9LPS4_HALLT/89-239 AC B9LPS4.1
#=GS F1D652_9CAUD/81-263 AC F1D652.1
#=GS G6IHN4_9DELT/795-946 AC G6IHN4.1
#=GS F9N7W2_9ACTO/385-577 AC F9N7W2.1
#=GS C9DCS8_9CAUD/6-190 AC C9DCS8.1
#=GS D6RRL4_BPKPP/90-234 AC D6RRL4.1
#=GS A1VEZ8_DESVV/85-235 AC A1VEZ8.1
#=GS C5VQ73_CLOBO/26-195 AC C5VQ73.1
#=GS A2TX93_9FLAO/11-225 AC A2TX93.1
#=GS Q18J31_HALWD/305-488 AC Q18J31.1
#=GS B5A774_9CAUD/6-190 AC B5A774.1
#=GS Q311V5_DESDG/86-236 AC Q311V5.1
#=GS A0JTB8_ARTS2/348-543 AC A0JTB8.1
#=GS D5L2D1_9VIRU/7-196 AC D5L2D1.1
#=GS H6WTW9_9CAUD/96-275 AC H6WTW9.1
#=GS F3D7G0_PROAA/385-577 AC F3D7G0.1
#=GS Q7Y5I2_9CAUD/24-176 AC Q7Y5I2.1
#=GS A9B4Z0_HERA2/362-551 AC A9B4Z0.1
#=GS F1VGB2_PROAA/385-577 AC F1VGB2.1
#=GS E6WX41_PSEUU/99-269 AC E6WX41.1
#=GS Q4TVX7_9CAUD/4-174 AC Q4TVX7.1
#=GS A3Z4P7_9SYNE/305-487 AC A3Z4P7.1
#=GS C4XS22_DESMR/823-972 AC C4XS22.1
#=GS E7GS19_CLOSY/26-195 AC E7GS19.1
#=GS Q18H10_HALWD/87-238 AC Q18H10.1
#=GS B9LVQ1_HALLT/280-460 AC B9LVQ1.1
#=GS C4Z9G2_EUBR3/26-195 AC C4Z9G2.1
#=GS G2ICY7_9CLOT/32-213 AC G2ICY7.1
#=GS E4EVD2_PROAA/385-577 AC E4EVD2.1
#=GS H2HRH3_CORDP/315-509 AC H2HRH3.1
#=GS A0LGR0_SYNFM/88-238 AC A0LGR0.1
#=GS B1HUA9_LYSSC/103-272 AC B1HUA9.1
#=GS B4SRR4_STRM5/150-325 AC B4SRR4.1
#=GS A5I0T2_CLOBH/32-212 AC A5I0T2.1
#=GS D5UAK6_BRAM5/90-241 AC D5UAK6.1
#=GS Q7VYJ1_BORPE/321-498 AC Q7VYJ1.1
#=GS H6RT54_BLASD/314-490 AC H6RT54.1
#=GS E3IJH9_DESVR/85-235 AC E3IJH9.1
#=GS E8SSB0_GEOS2/106-276 AC E8SSB0.1
#=GS G4QUZ0_CORPS/316-508 AC G4QUZ0.1
#=GS B4X9A8_9CAUD/3-164 AC B4X9A8.1
#=GS C5BVS5_BEUC1/377-585 AC C5BVS5.1
#=GS D5Z2F8_MYCTU/8-185 AC D5Z2F8.1
#=GS Q30VA0_DESDG/808-961 AC Q30VA0.1
#=GS Q2JSE0_SYNJA/335-508 AC Q2JSE0.1
#=GS G2G377_9CLOT/4-175 AC G2G377.1
#=GS G0DUS6_PROAA/385-577 AC G0DUS6.1
#=GS B0C1R2_ACAM1/287-457 AC B0C1R2.1
#=GS YPRB_BACSU/104-274 AC P50837.1
#=GS D7CNK1_SYNLT/80-250 AC D7CNK1.1
#=GS F5YA77_TREAZ/104-282 AC F5YA77.1
#=GS E4B1R8_PROAA/385-577 AC E4B1R8.1
#=GS G0HU71_HALHT/85-235 AC G0HU71.1
#=GS H1HRI3_9FIRM/30-200 AC H1HRI3.1
#=GS D6PIE5_9VIRU/2-172 AC D6PIE5.1
#=GS F0YDR4_AURAN/401-583 AC F0YDR4.1
#=GS G4FKT2_9SYNE/314-505 AC G4FKT2.1
#=GS F0KAC0_CLOAE/26-195 AC F0KAC0.1
#=GS F1D4U5_9CAUD/81-263 AC F1D4U5.1
#=GS D6SA21_PEPMA/6-161 AC D6SA21.1
#=GS G1D0W2_9VIRU/6-190 AC G1D0W2.1
#=GS G2LX53_9XANT/84-259 AC G2LX53.1
#=GS H7DGJ0_9CLOT/32-213 AC H7DGJ0.1
#=GS A1R3T5_ARTAT/338-533 AC A1R3T5.1
#=GS B1QKI0_CLOBO/25-205 AC B1QKI0.1
#=GS F0CA30_9XANT/81-256 AC F0CA30.1
#=GS E2WGB5_MYCTU/320-510 AC E2WGB5.1
#=GS G4QYA8_CORPS/275-467 AC G4QYA8.1
#=GS F1U6E4_PROAA/385-577 AC F1U6E4.1
#=GS D8FIR0_9FIRM/16-175 AC D8FIR0.1
#=GS H8MH14_CORCM/165-367 AC H8MH14.1
#=GS A2BP77_PROMS/292-465 AC A2BP77.1
#=GS F4AZ91_KROS4/11-225 AC F4AZ91.1
#=GS H6MSE1_GORPV/337-530 AC H6MSE1.1
#=GS B2TND8_CLOBB/32-210 AC B2TND8.1
#=GS D4CAF2_9CLOT/70-239 AC D4CAF2.1
#=GS C2CRC8_CORST/297-473 AC C2CRC8.1
#=GS B8HDI9_ARTCA/350-546 AC B8HDI9.1
#=GS B4XY66_9CAUD/96-275 AC B4XY66.1
#=GS A9BDS5_PROM4/301-483 AC A9BDS5.1
#=GS C0QJG3_DESAH/807-955 AC C0QJG3.1
#=GS H9D1F4_9VIRU/6-183 AC H9D1F4.1
#=GS H8MXF2_CORCM/220-389 AC H8MXF2.1
#=GS G2Z1B6_FLABF/31-183 AC G2Z1B6.1
#=GS B0JVQ6_MICAN/302-473 AC B0JVQ6.1
#=GS B4X9A9_9CAUD/3-164 AC B4X9A9.1
#=GS F3AFJ6_9FIRM/30-204 AC F3AFJ6.1
#=GS E4FUZ9_PROAA/385-577 AC E4FUZ9.1
#=GS D8F221_9DELT/784-934 AC D8F221.1
#=GS D4TPY9_9NOST/284-455 AC D4TPY9.1
#=GS G5JE38_CROWT/319-490 AC G5JE38.1
#=GS D5HG60_9FIRM/25-194 AC D5HG60.1
#=GS G6FVD3_9CYAN/389-560 AC G6FVD3.1
#=GS H0P0J3_9SYNC/310-481 AC H0P0J3.1
#=GS E0PUK4_STRPY/3-185 AC E0PUK4.1
#=GS Q6WY38_BPT7/2-186 AC Q6WY38.1
#=GS Q5Z3N5_NOCFA/379-562 AC Q5Z3N5.1
#=GS G1V2T8_9DELT/807-956 AC G1V2T8.1
#=GS G0THS6_MYCCP/312-502 AC G0THS6.1
#=GS B6WVC0_9DELT/159-308 AC B6WVC0.1
#=GS A6LS77_CLOB8/32-210 AC A6LS77.1
#=GS C4FZH8_ABIDE/25-200 AC C4FZH8.1
#=GS C0WG78_9CORY/291-468 AC C0WG78.1
#=GS G4FNW2_9SYNE/312-503 AC G4FNW2.1
#=GS H9UH90_9SPIO/120-288 AC H9UH90.1
#=GS C7HU04_9FIRM/18-181 AC C7HU04.1
#=GS E4L176_9FIRM/14-181 AC E4L176.1
#=GS C3MI30_RHISN/198-382 AC C3MI30.1
#=GS F1V005_PROAA/385-577 AC F1V005.1
#=GS E2TKQ2_MYCTU/320-510 AC E2TKQ2.1
#=GS D3SSM7_NATMM/85-235 AC D3SSM7.1
#=GS E5VWU9_9FIRM/3-103 AC E5VWU9.1
#=GS Q05QU5_9SYNE/301-483 AC Q05QU5.1
#=GS C7MRU5_SACVD/377-532 AC C7MRU5.1
#=GS E4E4R7_PROAA/385-577 AC E4E4R7.1
#=GS G8VNM3_PROAA/385-577 AC G8VNM3.1
#=GS A3IV53_9CHRO/297-468 AC A3IV53.1
#=GS Q2P975_XANOM/125-300 AC Q2P975.1
#=GS Q3IPS5_NATPD/308-487 AC Q3IPS5.1
#=GS E6PIX7_9ZZZZ/330-508 AC E6PIX7.1
#=GS H0SNF1_9BRAD/230-414 AC H0SNF1.1
#=GS Q6WYJ1_BPT7/2-186 AC Q6WYJ1.1
#=GS G2ER82_CORGT/269-459 AC G2ER82.1
#=GS C1B8W9_RHOOB/320-509 AC C1B8W9.1
#=GS G4FLE2_9SYNE/3-165 AC G4FLE2.1
#=GS A8G383_PROM2/314-505 AC A8G383.1
#=GS E8VY94_VIBVM/28-201 AC E8VY94.1
#=GS C4L148_EXISA/89-258 AC C4L148.1
#=GS D7D778_GEOSC/106-276 AC D7D778.1
#=GS D8ID30_BRAP9/100-251 AC D8ID30.1
#=GS C9S1Z1_GEOSY/106-276 AC C9S1Z1.1
#=GS Q0TPU6_CLOP1/32-211 AC Q0TPU6.1
#=GS C6CUT2_PAESJ/108-277 AC C6CUT2.1
#=GS A3PAZ9_PROM0/292-465 AC A3PAZ9.1
#=GS G6GT03_9CHRO/318-489 AC G6GT03.1
#=GS A7I4Z0_METB6/187-354 AC A7I4Z0.1
#=GS Q5N0D8_SYNP6/287-458 AC Q5N0D8.1
#=GS H5U101_9ACTO/345-536 AC H5U101.1
#=GS B9M4E7_GEOSF/87-237 AC B9M4E7.1
#=GS Q46H97_PROMT/299-481 AC Q46H97.1
#=GS F1UAZ8_PROAA/226-418 AC F1UAZ8.1
#=GS E3IMX0_DESVR/949-1099 AC E3IMX0.1
#=GS G7Q581_9DELT/834-982 AC G7Q581.1
#=GS C0Z5C1_BREBN/124-295 AC C0Z5C1.1
#=GS D8GJR8_CLOLD/26-195 AC D8GJR8.1
#=GS G2IA10_9CLOT/4-175 AC G2IA10.1
#=GS E1KWG6_PEPMA/6-161 AC E1KWG6.1
#=GS Q4C7H8_CROWT/73-244 AC Q4C7H8.1
#=GS Q6WY90_BPT7/2-186 AC Q6WY90.1
#=GS B6W845_9FIRM/18-179 AC B6W845.1
#=GS A1UK77_MYCSK/316-504 AC A1UK77.1
#=GS D8HQZ4_AMYMU/295-475 AC D8HQZ4.1
#=GS H8I7P4_METCZ/164-329 AC H8I7P4.1
#=GS H8H346_DEIGI/159-338 AC H8H346.1
#=GS D3MLV6_PROAA/385-577 AC D3MLV6.1
#=GS E4FDQ7_PROAA/385-577 AC E4FDQ7.1
#=GS C3JQV7_RHOER/305-492 AC C3JQV7.1
#=GS C7P5K5_METFA/4-169 AC C7P5K5.1
#=GS G9X2I5_9FIRM/17-161 AC G9X2I5.1
#=GS F0KAC9_CLOAE/31-210 AC F0KAC9.1
#=GS Q7V318_PROMP/296-469 AC Q7V318.1
#=GS F7ZQ48_CLOAT/31-210 AC F7ZQ48.1
#=GS D3ASD0_9CLOT/1-119 AC D3ASD0.1
#=GS H7D876_9CLOT/4-175 AC H7D876.1
#=GS B3T2M8_9ARCH/14-167 AC B3T2M8.1
#=GS E0U581_CYAP2/307-478 AC E0U581.1
#=GS Q3AN27_SYNSC/301-483 AC Q3AN27.1
#=GS H7CX53_CLOPF/32-211 AC H7CX53.1
#=GS Q65I77_BACLD/133-303 AC Q65I77.1
#=GS E4CBF4_PROAA/385-577 AC E4CBF4.1
#=GS H2GQG0_CORDP/315-509 AC H2GQG0.1
#=GS G6BAR9_CLODI/4-184 AC G6BAR9.1
#=GS Q0RG49_FRAAA/298-495 AC Q0RG49.1
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