GenomeNet

Database: Pfam
Entry: Sigma54_activat
LinkDB: Sigma54_activat
Original site: Sigma54_activat 
#=GF ID   Sigma54_activat
#=GF AC   PF00158.25
#=GF DE   Sigma-54 interaction domain
#=GF PI   sigma54;
#=GF AU   Sonnhammer ELL
#=GF SE   Prosite
#=GF GA   20.20 20.20;
#=GF TC   20.20 20.20;
#=GF NC   20.10 20.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   11544185
#=GF RT   Binding of transcriptional activators to sigma 54 in the
#=GF RT   presence of the transition state analog ADP-aluminum fluoride:
#=GF RT   insights into activator mechanochemical action. 
#=GF RA   Chaney M, Grande R, Wigneshweraraj SR, Cannon W, Casaz P,
#=GF RA   Gallegos MT, Schumacher J, Jones S, Elderkin S, Dago AE, Morett
#=GF RA   E, Buck M; 
#=GF RL   Genes Dev 2001;15:2282-2294.
#=GF RN   [2]
#=GF RM   12618438
#=GF RT   Domain Architectures of sigma(54)-Dependent Transcriptional
#=GF RT   Activators. 
#=GF RA   Studholme DJ, Dixon R; 
#=GF RL   J Bacteriol 2003;185:1757-1767.
#=GF DR   INTERPRO; IPR002078;
#=GF DR   PROSITE; PDOC00579;
#=GF DR   SCOP; 1l5z; fa;
#=GF SQ   20350
#=GS W7YAU6_9BACT/150-318        AC W7YAU6.1
#=GS J3HXJ3_9BURK/33-201         AC J3HXJ3.1
#=GS W0V194_9BURK/137-304        AC W0V194.1
#=GS Q1LMF9_CUPMC/231-398        AC Q1LMF9.1
#=GS W4MFL0_9BACT/13-180         AC W4MFL0.1
#=GS G7QCE3_9DELT/138-305        AC G7QCE3.1
#=GS A0A098RGT1_9GAMM/144-311    AC A0A098RGT1.1
#=GS V6SAS9_9FLAO/13-180         AC V6SAS9.1
#=GS A0A062XRQ8_9BACT/144-311    AC A0A062XRQ8.1
#=GS I0KF59_9BACT/150-317        AC I0KF59.1
#=GS A0A091AM09_9DELT/275-443    AC A0A091AM09.1
#=GS A0A0A2DXQ8_9PORP/147-314    AC A0A0A2DXQ8.1
#=GS R5X4H6_9CLOT/278-446        AC R5X4H6.1
#=GS U3AZP4_9VIBR/205-371        AC U3AZP4.1
#=GS B0UHN0_METS4/139-306        AC B0UHN0.1
#=GS A0A0V2F9R3_CAUVI/142-306    AC A0A0V2F9R3.1
#=GS E4TR13_MARTH/143-310        AC E4TR13.1
#=GS A0A0F2JM51_9FIRM/154-322    AC A0A0F2JM51.1
#=GS C0D8A8_9FIRM/333-488        AC C0D8A8.1
#=GS A5GB16_GEOUR/181-348        AC A5GB16.1
#=GS C8S0U1_9RHOB/229-396        AC C8S0U1.1
#=GS A0A142M775_AMIAI/145-312    AC A0A142M775.1
#=GS A0A081MB66_9RHIZ/138-305    AC A0A081MB66.1
#=GS A0A0G2ZWA5_9DELT/143-310    AC A0A0G2ZWA5.1
#=GS A0A0D1NMM3_PSEPU/194-361    AC A0A0D1NMM3.1
#=GS Q8YR90_NOSS1/164-308        AC Q8YR90.1
#=GS K2JQW9_9PROT/142-308        AC K2JQW9.1
#=GS A4G8Q2_HERAR/145-312        AC A4G8Q2.2
#=GS Q0AAS6_ALKEH/121-288        AC Q0AAS6.1
#=GS A0A0A2HU00_9DELT/138-305    AC A0A0A2HU00.1
#=GS W0HUI0_9GAMM/137-304        AC W0HUI0.1
#=GS G2FP41_9FIRM/267-435        AC G2FP41.1
#=GS A0A085L0F3_9FLAO/13-180     AC A0A085L0F3.1
#=GS A0A0E3ZGJ3_9BACT/169-257    AC A0A0E3ZGJ3.1
#=GS Q986R6_RHILO/146-313        AC Q986R6.1
#=GS G0A8J9_COLFT/350-518        AC G0A8J9.1
#=GS A0A0M4D6Q0_SPHS1/146-313    AC A0A0M4D6Q0.1
#=GS A0A0C1SQQ2_9ACTN/1-135      AC A0A0C1SQQ2.1
#=GS A0A017T3B6_9DELT/152-319    AC A0A017T3B6.1
#=GS A0A0Q6VUS4_9BURK/261-428    AC A0A0Q6VUS4.1
#=GS W4HPK0_9RHOB/146-299        AC W4HPK0.1
#=GS K1LF16_9BACT/157-324        AC K1LF16.1
#=GS B8F9P9_DESAA/195-362        AC B8F9P9.1
#=GS C1A5W0_GEMAT/166-334        AC C1A5W0.1
#=GS A0A023BRN3_9FLAO/154-321    AC A0A023BRN3.1
#=GS D3SPH1_THEAH/195-362        AC D3SPH1.1
#=GS A0A085TZA2_9RHOB/163-330    AC A0A085TZA2.1
#=GS S4XI15_SORCE/23-190         AC S4XI15.1
#=GS A0A136KBK2_9BACT/143-310    AC A0A136KBK2.1
#=GS A0A0M0I8Q3_9VIBR/1-110      AC A0A0M0I8Q3.1
#=GS G7WCE7_DESOD/140-307        AC G7WCE7.1
#=GS A0A085W2U5_9DELT/134-301    AC A0A085W2U5.1
#=GS A0A095VV93_9GAMM/128-282    AC A0A095VV93.1
#=GS R6FFY7_9BACE/132-299        AC R6FFY7.1
#=GS S0G5L5_9DELT/270-437        AC S0G5L5.1
#=GS A0A0N0Z6T0_9BACI/305-473    AC A0A0N0Z6T0.1
#=GS A0A0Q1BD52_9RHOB/144-311    AC A0A0Q1BD52.1
#=GS A4Y0H3_PSEMY/28-193         AC A4Y0H3.1
#=GS A0A0Q6MT30_9BURK/143-310    AC A0A0Q6MT30.1
#=GS Q3J1V9_RHOS4/120-287        AC Q3J1V9.1
#=GS A0A0K1P828_9DELT/150-317    AC A0A0K1P828.1
#=GS A9H7P5_GLUDA/175-246        AC A9H7P5.1
#=GS A0A0F2JK72_9FIRM/154-320    AC A0A0F2JK72.1
#=GS A0A0B7MNC6_9FIRM/33-201     AC A0A0B7MNC6.1
#=GS A0A100YTU1_9FIRM/338-506    AC A0A100YTU1.1
#=GS A0A0S4L2S4_9BACT/143-310    AC A0A0S4L2S4.1
#=GS A0A023DF83_9BACI/258-426    AC A0A023DF83.1
#=GS A0A0R2X758_9BACT/124-291    AC A0A0R2X758.1
#=GS Q5LCL5_BACFN/154-321        AC Q5LCL5.1
#=GS A0A0R2X170_9FLAO/13-180     AC A0A0R2X170.1
#=GS A0A0G2ZTK8_9DELT/1-136      AC A0A0G2ZTK8.1
#=GS F2LCG2_BURGS/172-339        AC F2LCG2.1
#=GS A0A139BQ52_9PROT/147-314    AC A0A139BQ52.1
#=GS A0A135I7N7_9GAMM/149-315    AC A0A135I7N7.1
#=GS A0A0G3W839_9CLOT/350-518    AC A0A0G3W839.1
#=GS Q3J1T8_RHOS4/26-192         AC Q3J1T8.2
#=GS A0A0P7WIH8_9ALTE/340-508    AC A0A0P7WIH8.1
#=GS G4E576_9GAMM/143-310        AC G4E576.1
#=GS F8C4Y3_THEGP/142-309        AC F8C4Y3.1
#=GS Q0APQ1_MARMM/142-306        AC Q0APQ1.1
#=GS E4U6G2_OCEP5/164-247        AC E4U6G2.1
#=GS A0A165R179_9SPHN/142-305    AC A0A165R179.1
#=GS A0A165Q9M4_9SPHN/150-317    AC A0A165Q9M4.1
#=GS A0A081NLQ5_9GAMM/141-308    AC A0A081NLQ5.1
#=GS C5BT95_TERTT/215-382        AC C5BT95.1
#=GS A0A0F4PRA0_9GAMM/136-303    AC A0A0F4PRA0.1
#=GS C1DF92_AZOVD/349-517        AC C1DF92.1
#=GS E3FVG3_STIAD/146-313        AC E3FVG3.1
#=GS L9PAW5_9BURK/146-313        AC L9PAW5.1
#=GS B7RSR7_9GAMM/155-319        AC B7RSR7.1
#=GS H8FQC3_PHAMO/148-315        AC H8FQC3.1
#=GS W6NIT1_CLOTY/130-301        AC W6NIT1.1
#=GS A0A0A1H2K0_9BURK/207-374    AC A0A0A1H2K0.1
#=GS S0KJ06_9ENTE/105-278        AC S0KJ06.1
#=GS A0A159Z3I3_9RHOB/165-331    AC A0A159Z3I3.1
#=GS V5AWR1_ENTCL/8-174          AC V5AWR1.1
#=GS A0A071LBV3_9PROT/134-301    AC A0A071LBV3.1
#=GS A0A0N0K0B0_9SPHN/139-306    AC A0A0N0K0B0.1
#=GS A0A0N1ADA3_9PROT/185-356    AC A0A0N1ADA3.1
#=GS A0A0F3KKK2_9NEIS/135-302    AC A0A0F3KKK2.1
#=GS A0A075KJI9_9FIRM/340-503    AC A0A075KJI9.1
#=GS L9UD51_9GAMM/213-381        AC L9UD51.1
#=GS B0UGT0_METS4/145-312        AC B0UGT0.1
#=GS A0A097R350_HAFAL/350-517    AC A0A097R350.1
#=GS D6Z1P1_DESAT/140-306        AC D6Z1P1.1
#=GS F3L0K7_9GAMM/246-413        AC F3L0K7.1
#=GS G8MHE7_9BURK/125-294        AC G8MHE7.1
#=GS A0A0F6YEW2_9DELT/129-296    AC A0A0F6YEW2.1
#=GS A0A154W8G4_9PROT/144-311    AC A0A154W8G4.1
#=GS Q81ZE3_BACAN/148-316        AC Q81ZE3.1
#=GS A6L5X2_BACV8/145-312        AC A6L5X2.1
#=GS Q1D0K5_MYXXD/306-472        AC Q1D0K5.1
#=GS Q88CY1_PSEPK/141-308        AC Q88CY1.1
#=GS A0A074LXG6_9BACL/98-266     AC A0A074LXG6.1
#=GS A0A0M5IZF9_9DELT/396-563    AC A0A0M5IZF9.1
#=GS H8N0R8_CORCM/146-313        AC H8N0R8.1
#=GS A9CEZ3_AGRFC/145-313        AC A9CEZ3.1
#=GS Q2IQU1_ANADE/244-411        AC Q2IQU1.1
#=GS A0A0G3EDR7_9BACT/142-309    AC A0A0G3EDR7.1
#=GS A0A0A2UZE7_9BACI/368-536    AC A0A0A2UZE7.1
#=GS A3WM94_9GAMM/203-370        AC A3WM94.1
#=GS B0PHS8_9FIRM/304-472        AC B0PHS8.1
#=GS D7B6Y7_NOCDD/170-252        AC D7B6Y7.1
#=GS A0A0S7YVU2_9DELT/326-493    AC A0A0S7YVU2.1
#=GS K6U7X7_9CLOT/161-337        AC K6U7X7.1
#=GS A0A0A2T6Y6_9GAMM/137-304    AC A0A0A2T6Y6.1
#=GS Q3J9X1_NITOC/143-310        AC Q3J9X1.1
#=GS F2NCS4_DESAR/144-311        AC F2NCS4.1
#=GS A0A0Q3TAU1_9BACI/141-308    AC A0A0Q3TAU1.1
#=GS E3FZ16_STIAD/148-315        AC E3FZ16.1
#=GS X6GP85_9RHIZ/146-313        AC X6GP85.1
#=GS A0A0Q5CZF1_9RHIZ/138-305    AC A0A0Q5CZF1.1
#=GS C8WT15_ALIAD/138-287        AC C8WT15.1
#=GS A0A098R2F1_9SPIO/207-374    AC A0A098R2F1.1
#=GS A0A127JP60_9BURK/171-339    AC A0A127JP60.1
#=GS A0A0P9EQN5_9BACL/315-483    AC A0A0P9EQN5.1
#=GS A4BJ92_9GAMM/9-176          AC A4BJ92.1
#=GS W0F120_9BACT/145-312        AC W0F120.1
#=GS Q9KE65_BACHD/153-321        AC Q9KE65.1
#=GS B8J2L7_DESDA/143-310        AC B8J2L7.1
#=GS R6BT77_9BACT/153-320        AC R6BT77.1
#=GS A0A0N1AJI2_9SPHN/184-355    AC A0A0N1AJI2.1
#=GS A0A0F6AH60_9GAMM/148-315    AC A0A0F6AH60.1
#=GS Q3SKC8_THIDA/135-302        AC Q3SKC8.1
#=GS A1HNH8_9FIRM/322-490        AC A1HNH8.1
#=GS Q489D8_COLP3/145-312        AC Q489D8.1
#=GS C7LR24_DESBD/138-305        AC C7LR24.1
#=GS A0A0U3AJI8_9ALTE/144-311    AC A0A0U3AJI8.1
#=GS A0A0C2D9W6_9DELT/179-346    AC A0A0C2D9W6.1
#=GS A0A0U9HE35_9THEO/311-478    AC A0A0U9HE35.1
#=GS G7M941_9CLOT/79-253         AC G7M941.1
#=GS C1DDK3_AZOVD/158-326        AC C1DDK3.1
#=GS A0A0A8WV21_9DELT/149-316    AC A0A0A8WV21.1
#=GS E3FTF6_STIAD/302-468        AC E3FTF6.1
#=GS S6ADC4_9PROT/6-173          AC S6ADC4.1
#=GS A7HV61_PARL1/120-287        AC A7HV61.1
#=GS R7JM67_9BACT/131-298        AC R7JM67.1
#=GS A0A080MEP2_9PROT/138-305    AC A0A080MEP2.1
#=GS I0AIL0_IGNAJ/269-436        AC I0AIL0.1
#=GS A0A0T6ADH8_9BACT/144-311    AC A0A0T6ADH8.1
#=GS F9ZB38_ODOSD/13-180         AC F9ZB38.1
#=GS A0A0R0CKY4_9GAMM/154-321    AC A0A0R0CKY4.1
#=GS A0A0Q7YRL5_9SPHN/184-355    AC A0A0Q7YRL5.1
#=GS A0A0J7MSC6_LASNI/303-468    AC A0A0J7MSC6.1
#=GS A0A017RVB4_9CLOT/338-506    AC A0A017RVB4.1
#=GS A0A0F2NJ19_9DELT/256-423    AC A0A0F2NJ19.1
#=GS I9AWT3_9FIRM/88-265         AC I9AWT3.1
#=GS A0A177PG06_9GAMM/194-361    AC A0A177PG06.1
#=GS X6DGG3_9RHIZ/146-313        AC X6DGG3.1
#=GS A0A098U7C1_9BURK/336-504    AC A0A098U7C1.1
#=GS C3K8C1_PSEFS/31-197         AC C3K8C1.1
#=GS X6KW04_9RHOB/160-327        AC X6KW04.1
#=GS D5EQM8_CORAD/218-385        AC D5EQM8.1
#=GS A0A0Q5MRG0_9BURK/148-315    AC A0A0Q5MRG0.1
#=GS A0A085WXC8_9DELT/139-306    AC A0A085WXC8.1
#=GS X7FCQ7_9RHOB/141-299        AC X7FCQ7.1
#=GS A0A0N9N9G5_9ACTN/174-257    AC A0A0N9N9G5.1
#=GS A0A0F2S4Y8_9FIRM/354-522    AC A0A0F2S4Y8.1
#=GS Q2RKJ6_MOOTA/320-488        AC Q2RKJ6.1
#=GS A0A101WRT4_9FIRM/346-514    AC A0A101WRT4.1
#=GS A0A0S7WDW4_9BACT/163-329    AC A0A0S7WDW4.1
#=GS I5B7F9_9DELT/165-353        AC I5B7F9.1
#=GS M9R9P5_9RHOB/130-297        AC M9R9P5.1
#=GS A0A091FCV7_9DELT/172-339    AC A0A091FCV7.1
#=GS A0A0F4PCI9_PSEO7/127-294    AC A0A0F4PCI9.1
#=GS W8KJT9_HALHR/140-307        AC W8KJT9.1
#=GS A0A0S7WXL0_9BACT/142-309    AC A0A0S7WXL0.1
#=GS W9GYM8_9PROT/340-509        AC W9GYM8.1
#=GS A0A0N1LCJ9_9PROT/148-315    AC A0A0N1LCJ9.1
#=GS D0YWX9_PHODD/7-174          AC D0YWX9.1
#=GS A0A0A7EJ64_9GAMM/141-308    AC A0A0A7EJ64.1
#=GS A9FLX9_SORC5/138-305        AC A9FLX9.1
#=GS G7LWB6_9GAMM/205-372        AC G7LWB6.1
#=GS A0A0C1XRK4_9CYAN/17-184     AC A0A0C1XRK4.1
#=GS F2IFT9_FLUTR/161-328        AC F2IFT9.1
#=GS A0A0S8IDE2_9DELT/145-312    AC A0A0S8IDE2.1
#=GS S2Y836_9BACL/370-538        AC S2Y836.1
#=GS A0A136KQ93_9BACT/141-308    AC A0A136KQ93.1
#=GS Q1IUS1_KORVE/170-337        AC Q1IUS1.1
#=GS D4HYF1_ERWAC/136-303        AC D4HYF1.1
#=GS K0NH81_DESTT/5-172          AC K0NH81.1
#=GS A0A157SFZ5_9BORD/236-405    AC A0A157SFZ5.1
#=GS PRPR_SALTY/221-397          AC P74839.1
#=GS A0A127F465_9RHIZ/119-286    AC A0A127F465.1
#=GS U2ZW83_VIBPR/142-309        AC U2ZW83.1
#=GS H1D3R4_9FUSO/134-301        AC H1D3R4.1
#=GS A0A0D2GCH1_9DELT/213-380    AC A0A0D2GCH1.1
#=GS R7HQW2_9BACT/144-311        AC R7HQW2.1
#=GS A0A0A2HZ51_9DELT/207-374    AC A0A0A2HZ51.1
#=GS A0A0U9HDM3_9THEO/257-424    AC A0A0U9HDM3.1
#=GS A0A101HC22_9FIRM/343-511    AC A0A101HC22.1
#=GS A0A0S8CI11_9BACT/1-78       AC A0A0S8CI11.1
#=GS Q314Z8_DESAG/465-632        AC Q314Z8.1
#=GS E5AU32_PARRH/344-512        AC E5AU32.1
#=GS A0A0C2DRZ3_9DELT/145-312    AC A0A0C2DRZ3.1
#=GS A0A166KAM1_9GAMM/135-302    AC A0A166KAM1.1
#=GS A0A120D510_9BACT/165-332    AC A0A120D510.1
#=GS G7W5T0_DESOD/283-451        AC G7W5T0.1
#=GS L7VJX5_9FLAO/13-180         AC L7VJX5.1
#=GS A0A0R2TMK8_9FLAO/140-307    AC A0A0R2TMK8.1
#=GS D6Z3F2_DESAT/144-311        AC D6Z3F2.1
#=GS F2NGT4_DESAR/137-304        AC F2NGT4.1
#=GS A0A014MJI1_9BURK/146-313    AC A0A014MJI1.1
#=GS A0A0M9GE10_9PSED/133-299    AC A0A0M9GE10.1
#=GS B2IE22_BEII9/221-388        AC B2IE22.1
#=GS A1SZE8_PSYIN/317-485        AC A1SZE8.1
#=GS A0A101M6H5_9GAMM/141-308    AC A0A101M6H5.1
#=GS N6WRL4_9ALTE/317-484        AC N6WRL4.1
#=GS A9GA77_SORC5/1407-1574      AC A9GA77.1
#=GS A0A135VTA8_9ARCH/204-370    AC A0A135VTA8.1
#=GS A0A0R0DWV3_9GAMM/154-321    AC A0A0R0DWV3.1
#=GS U3B3I6_9VIBR/142-309        AC U3B3I6.1
#=GS A0A0T6ACN8_9DELT/141-308    AC A0A0T6ACN8.1
#=GS A0A182C7V7_9BACT/119-281    AC A0A182C7V7.1
#=GS A0A0W8EFC3_9BACT/139-306    AC A0A0W8EFC3.1
#=GS A0A0C1ZPE6_9DELT/136-303    AC A0A0C1ZPE6.1
#=GS A0A0R2HXV6_CARDV/76-252     AC A0A0R2HXV6.1
#=GS A0A080LZJ8_9PROT/186-357    AC A0A080LZJ8.1
#=GS W4LME6_9BACT/147-314        AC W4LME6.1
#=GS C3K167_PSEFS/144-311        AC C3K167.1
#=GS W4R0B0_BACA3/164-330        AC W4R0B0.1
#=GS A0A0Q6ESR6_9RHIZ/144-311    AC A0A0Q6ESR6.1
#=GS U2PPB2_9CLOT/75-252         AC U2PPB2.1
#=GS A4G4U8_HERAR/184-351        AC A4G4U8.2
#=GS A0A0S8ERY1_9DELT/151-318    AC A0A0S8ERY1.1
#=GS A1TYE9_MARHV/142-309        AC A1TYE9.1
#=GS Q3B5Z9_CHLL7/143-310        AC Q3B5Z9.1
#=GS G9YXK7_9FIRM/192-357        AC G9YXK7.1
#=GS A0A0Q8RC56_9BURK/144-310    AC A0A0Q8RC56.1
#=GS A0A0R2T9C9_9GAMM/144-311    AC A0A0R2T9C9.1
#=GS A0A0A0F2K7_9GAMM/144-311    AC A0A0A0F2K7.1
#=GS L9PEK6_9BURK/186-353        AC L9PEK6.1
#=GS F2LMJ5_BURGS/11-178         AC F2LMJ5.1
#=GS Q65GW2_BACLD/114-287        AC Q65GW2.1
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