GenomeNet

Database: Pfam
Entry: Trans_coact
LinkDB: Trans_coact
Original site: Trans_coact 
#=GF ID   Trans_coact
#=GF AC   PF16805.4
#=GF DE   Phage late-transcription coactivator
#=GF AU   Eberhardt RY
#=GF SE   PDB:3tbi
#=GF GA   27.00 27.00;
#=GF TC   49.60 71.90;
#=GF NC   24.30 21.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   22135460
#=GF RT   Crystal structure of the bacteriophage T4 late-transcription
#=GF RT   coactivator gp33 with the beta-subunit flap domain of
#=GF RT   Escherichia coli RNA polymerase.
#=GF RA   Twist KA, Campbell EA, Deighan P, Nechaev S, Jain V, Geiduschek
#=GF RA   EP, Hochschild A, Darst SA;
#=GF RL   Proc Natl Acad Sci U S A. 2011;108:19961-19966.
#=GF DR   INTERPRO; IPR031836;
#=GF CC   This family of proteins is found in Caudovirales. It is a
#=GF CC   late-transcription coactivator which interacts with the host RNA
#=GF CC   polymerase forming a part of the initiation complex [1].
#=GF SQ   3
#=GS Q6WIE8_BPKVM/25-94  AC Q6WIE8.1
#=GS E1XT78_BPSAV/12-80  AC E1XT78.1
#=GS VG33_BPT4/37-108    AC P13338.1
#=GS VG33_BPT4/37-108    DR PDB; 3TBI A; 37-102;
Q6WIE8_BPKVM/25-94             .RQQISLEIEEIYNScPAMTYLEACLFFIEQYDYDISRFPYLINQTLRDKIETEAINEKTIRSRFG...SASDL..
E1XT78_BPSAV/12-80             p-DSFSELVLMRASQ.RKESILETMASVCEEYDIEEAKVKKLITPPLLSRLTAECSDARLLKGELK...SKK--li
VG33_BPT4/37-108               r-QENGFIIEKMVEE.FGMSYLEATTAFLEENSIPETQFAKFIPSGIIEKIQSEAIDENLLRPSVVrceKTNTL..
#=GR VG33_BPT4/37-108    SS    H-HHHHHHHHHHHHH.S---HHHHHHHHHHHTT--GGGHHHHS-HHHHHHHHHHHHHHT-S-HHHHH-XXXXXX..
#=GC SS_cons                   H-HHHHHHHHHHHHH.S---HHHHHHHHHHHTT--GGGHHHHS-HHHHHHHHHHHHHHT-S-HHHHH-XXXXXX..
#=GC seq_cons                  ..QphShlIEchssp.huMSYLEAssuFlEEYDI-Eo+FsKLIsssLl-KIpoEAIDE+LLRucls...SsssL..
//
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