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Database: Pfam
Entry: Agglutinin
LinkDB: Agglutinin
Original site: Agglutinin 
#=GF ID   Agglutinin
#=GF AC   PF07468.6
#=GF DE   Agglutinin
#=GF AU   Finn RD
#=GF SE   Pfam-B_57133 (release 10.0)
#=GF GA   25.00 25.00;
#=GF TC   27.50 25.80;
#=GF NC   23.20 17.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   9334739
#=GF RT   Structure of benzyl T-antigen disaccharide bound to Amaranthus
#=GF RT   caudatus agglutinin. 
#=GF RA   Transue TR, Smith AK, Mo H, Goldstein IJ, Saper MA; 
#=GF RL   Nat Struct Biol 1997;4:779-783.
#=GF DR   INTERPRO; IPR008998;
#=GF DR   SCOP; 1jlx; fa;
#=GF SQ   39
#=GS D8R8I2_SELML/191-322  AC D8R8I2.1
#=GS B4FHK4_MAIZE/57-198   AC B4FHK4.1
#=GS Q38719_AMAHP/2-154    AC Q38719.1
#=GS F6HZZ7_VITVI/1-152    AC F6HZZ7.1
#=GS I1IKC1_BRADI/178-313  AC I1IKC1.1
#=GS I1IKC1_BRADI/6-136    AC I1IKC1.1
#=GS B9S0N4_RICCO/4-153    AC B9S0N4.1
#=GS Q6YNX3_AMACA/159-299  AC Q6YNX3.1
#=GS Q4JEV5_WHEAT/5-149    AC Q4JEV5.1
#=GS F6HZZ7_VITVI/158-294  AC F6HZZ7.1
#=GS D7U3H9_VITVI/158-294  AC D7U3H9.1
#=GS Q6YNX3_AMACA/2-154    AC Q6YNX3.1
#=GS B9RI90_RICCO/8-105    AC B9RI90.1
#=GS F6HZZ6_VITVI/158-294  AC F6HZZ6.1
#=GS D8QQF3_SELML/191-328  AC D8QQF3.1
#=GS Q4JEV5_WHEAT/184-318  AC Q4JEV5.1
#=GS Q8S390_AMAHP/2-154    AC Q8S390.1
#=GS A5AYS3_VITVI/158-295  AC A5AYS3.1
#=GS D7U3H5_VITVI/157-294  AC D7U3H5.1
#=GS B9S0N3_RICCO/3-146    AC B9S0N3.1
#=GS A5AYS3_VITVI/1-152    AC A5AYS3.1
#=GS B9S0N3_RICCO/156-295  AC B9S0N3.1
#=GS F2CYR6_HORVD/5-115    AC F2CYR6.1
#=GS F2CYR6_HORVD/212-350  AC F2CYR6.1
#=GS Q71QF2_AMACA/159-299  AC Q71QF2.1
#=GS Q71QF2_AMACA/159-299  DR PDB; 1JLY B; 158-298;
#=GS Q71QF2_AMACA/159-299  DR PDB; 1JLY A; 158-298;
#=GS Q71QF2_AMACA/159-299  DR PDB; 1JLX B; 158-298;
#=GS Q71QF2_AMACA/159-299  DR PDB; 1JLX A; 158-298;
#=GS B9SC09_RICCO/3-123    AC B9SC09.1
#=GS D7U3H5_VITVI/1-152    AC D7U3H5.1
#=GS B9S0N4_RICCO/158-293  AC B9S0N4.1
#=GS Q38719_AMAHP/159-299  AC Q38719.1
#=GS Q71QF2_AMACA/2-154    AC Q71QF2.1
#=GS Q71QF2_AMACA/2-154    DR PDB; 1JLY B; 1-153;
#=GS Q71QF2_AMACA/2-154    DR PDB; 1JLY A; 1-153;
#=GS Q71QF2_AMACA/2-154    DR PDB; 1JLX B; 1-153;
#=GS Q71QF2_AMACA/2-154    DR PDB; 1JLX A; 1-153;
#=GS D8SQA4_SELML/144-278  AC D8SQA4.1
#=GS I1H3D5_BRADI/37-153   AC I1H3D5.1
#=GS B6STM7_MAIZE/55-193   AC B6STM7.1
#=GS I1H3D5_BRADI/188-327  AC I1H3D5.1
#=GS F6HZZ6_VITVI/1-152    AC F6HZZ6.1
#=GS D7U3H9_VITVI/1-152    AC D7U3H9.1
#=GS B9SC09_RICCO/162-299  AC B9SC09.1
#=GS B9RI90_RICCO/112-250  AC B9RI90.1
#=GS Q8S390_AMAHP/159-299  AC Q8S390.1
D8R8I2_SELML/191-322             .......................................ltlpr------YVMFKGGNNKFMCVHA..-ERG..QEIWLQFNLENNPDLYAAFEVVP--T..VDG..NVAMCSIKRDRFWR.L-....S...PN.-.....-WIWADIERSKA--LTTPACLFEPIKL.SDK---.---------------------.---------..---------------lvafrstvnqklckrytdywvsslcaiadsindket
B4FHK4_MAIZE/57-198              ..........................................ke--LPKHV-CFKGDNGLYLSARM..--VE..GYPYLQFASDDIGDPSVRFTTYN-YM..IDGkrVIRVKSDHFGKFWR.R-....S...PN.-.....-WIWCDTDDTST---DNRDTLFEVVRV.GDDADA.VYGLRNLGNNHICHRLTYEGK.-ESCLNASI..PSV------------rkeaqlkiee..........................
Q38719_AMAHP/2-154               ............................................AGLPVIMCLKSNNNQKYLRYQS..DNIQ..QYGLLQFSADKILDPLAQFEVEPSKT..YDG..LVHIKSRYTNKYLV.RW....S...PN.H.....YWITASANEPDENKSNWACTLFKPLYV.EEGNMK.KVRLLHVQLGHYTENYTVGGS.FVSYLFAES..SQIDTGSKDVFHVID....................................
F6HZZ7_VITVI/1-152               ...........................................m-ALPRYVVLKSKYNNKYLRYIH..EDVQ..IHGFLQFSGEEVVTPYSKYQVEMAKN..GKG..LVHIRCCYNNKYWV.RW....S...KN.H.....WWIVAGADEPDEDQSSWSCTLFEPVYV.D-GDAQ.TLQFRHVQLGHYACLWRLPPP.YGSCLFAGS..TSPDNDLCDVCTIID....................................
I1IKC1_BRADI/178-313             ........................................lvlp----K-YVAFKGDNDKYLSARV..--IQ..RYNYLEFAATDIADPTVLNIIHP-NY..ADG..NIRVKSNHFDRFWR.R-....S...PN.-.....-WIWADSP--DT-HSRNRDTLFRV---.-VQLSG.YIGLQNLGNYNFCKRLTADRK.-KNCLNAAV..SSITEEAK-------irvee...............................
I1IKC1_BRADI/6-136               .....dspkcvafrskrtgnylrsvafrsqegkffadqssagdg----------------------..----..-------DNDVLASPYARFYLEPSKE..HEG..LIHVRCCYNNKYWV.AK....H...DG.DgsgcgHWIIGIVNEPDDDLSKPSCTLFQPVPL.TDKDSNlSIRF-----------------.---------..---------------lppqhqt.............................
B9S0N4_RICCO/4-153               ...........................................f--IPRYSVFKSNYSDKYLRYVN..ESES..LYRYVRCDGEDIVSPFAKFKVETATK..SAD..FVHIRCCFSNKYWR.RN....N...EE.G.....DYIIAAADKPDEDESKWSCTLFKP--I.QFLDDK.TFRFQHVQLGHNVWFNRSANE.YRGCLIARY..SVPELAGADLFTV--tn..................................
Q6YNX3_AMACA/159-299             ............................................FQFPKRYVTFKGNNGKYLGVIT..--IN..QLPCLQFGYDNLNDPKVAHEMFV--T..SNG..TICIKSTYMNKFWR.LS....T...DD.-.....-WILVDGNDPRE--TNEAAALFRS---.DVHDFN.VISLLNMQKTWFIKRFTSGKPgFINCMNAAT..QNVDETA--ILEII-g...................................
Q4JEV5_WHEAT/5-149               tgspkcvafrskhtrkylgsvqagseesagggkffeelshgadd----------------------..----..--------VDVLASPYTRFYLEPSKE..HDG..LLHVRCCHKNKYWV.AK....HvgeGS.G.....HWIIGIVNEPEDDLSKPSCTLFEPIPLaDTDNNL.SIRFFRPQQT-----------.---------..---------------tssesdmtkekgt.......................
F6HZZ7_VITVI/158-294             ........................................llpk------HIAFKGDNGYFLSART..--IE..GHPYLEFASSDIGDPTVGNEVFT--T..HDG..SVHIKSDYFGRFWR.R-....S...PN.-.....-WIWADSDDST---TNNPDTLFWPVRV.D---KN.VVALRNLGNNNFCKRLTTEGK.-ISCLNAGV..STISREA--------rlevaelv............................
D7U3H9_VITVI/158-294             ........................................ilpk------HIAFKGDNDYYLSART..--IE..GRPYLEFASTDIGDPTVGNEVFT--T..QDG..SARIKSDYFGRFWR.R-....S...PN.-.....-WILADSDDSTN---NNSNTLFWPVRV.D---KN.VVALRNLGNNNFCKRLTTEGK.-TSCLNAGV..STISREA--------rlevaelv............................
Q6YNX3_AMACA/2-154               ............................................AGLPVIMCLKSNNNQKYLRYQS..DNIQ..QYGLLQFSADKILDPLAQFEVEPSKT..YDG..LVHIKSRYTNKYLV.RW....S...PN.H.....YWITASANEPDENKSNWACTLFKPLYV.EEGNMK.KVRLLHVQLGHYTQNYTVGGS.FVSYLFAES..SQIDTGSKDVFHVID....................................
B9RI90_RICCO/8-105               ...............................fcvfksnfgekcl----------------------..----..--------------------------..---..--------RNKYWR.RT....S...EE.E.....DYIAATADAADEDQSKWSCTLFKPLAE.DEKTFR.FQHVQSGNNVWYLR-------.---------..---------------sdnasrgcltvrysneekhggdlfti..........
F6HZZ6_VITVI/158-294             ........................................ilpk------HIAFKGDNGHYLSARK..--IE..GHPYLEFASSDIGDPTVGNEVFT--T..HDG..SVRIKSDYFGRFWR.R-....S...PN.-.....-WIWADSDDST---TNNSDTLFWPVRV.D---NN.VVALRNLGNNNFCKRLTTEGK.-TSCLNAAV..STISREA--------rlevaelv............................
D8QQF3_SELML/191-328             .......................................ltlpr------YVMFKGGNNKFMCVHA..-ERG..QEIWLQFNLENNPDLHAAFEVVP--T..VDG..NVAMCSIKRDRFWR.L-....S...PN.-.....-WIWTDIERSKA--LTTPACLFEPIKL.SN---K.VVAFRSTVNQKLCKRYTD--Y.WVSSLCAIA..DSI------------ndkethlevsk.........................
Q4JEV5_WHEAT/184-318             ........................................lvlp----K-YVAFKGDNDMYLRARI..--IQ..KRNYLEFSSSDIADSTVVNTIFP-NY..ANG..NVRIKSNHFNRFWR.L-....S...PN.-.....-WIWADSADTSS---RDRDTLFRVV--.--MLPD.YIGLQNLGNSRYCKRLTADKK.-TSCLNAAV..DTIT-----------learlrve............................
Q8S390_AMAHP/2-154               ............................................AGLPVIMCLKSNNNQEYLRYQS..DNIQ..QYGLLQFSADKILDPLAQFEVEPSKT..YDG..LVHIKSRYTNKYLV.RW....S...PN.H.....YWITASANEPDENKSNWACTLFKPLYV.EEGNMK.KVRLLHVQLGHYTENYTVGGS.FVSYLFAES..SQIDTGSKDVFHVID....................................
A5AYS3_VITVI/158-295             ........................................ilpk------HIAFKGDNDYYLSART..--IE..GRPYLEFASTDIGDPTVGNEVFT--T..QDG..SARIKSDYFGRFWR.RS....S...PN.-.....-WILADSDDSTT---NNSNTLFWPVRV.D---KN.VVALRNLGNNNFCKRLTTEGK.-TSCLNAGV..STISREA--------rlevaelv............................
D7U3H5_VITVI/157-294             .......................................lilpk------HVAFKGDNGNYLSART..--IE..GHPYLEFASSDIGDPTVGNEVFT--T..HDR..SVRIKSHHFGRFWR.R-....S...PN.-.....-WIWADSDDST---TNNSDTLFWPVRV.D---KN.VVALRNFGNNNFCMRLTTEGK.-TSCLNAGV..STISREA--------rlevaelv............................
B9S0N3_RICCO/3-146               ..........................................pv--IPRFCVFKSNYAGKYLRYVQ..-EEK..QRRLIRCDGDDILDPLSKFRVEKAKS..NKD..LVHIRCSYSNKYWR.RN....G...EV.T.....DLIAAAADAADEDPSKWSCTLFKPLAK.DDKTFR.---FQHVQSG-----------.---------..---------------nnvwylrsdnedrgcliarysyeepdggdl......
A5AYS3_VITVI/1-152               ...........................................m-ELPRYVVFKSKYNNKXLRYIH..EDGE..IHGFLQFSGEEVMTPYSKYHVEMAKN..GKG..LVHIRCCYNNKYWV.RW....S...EN.H.....WWIVAGADETDEDQSLWTCTLFEPVYV.D-GDAQ.TLRFRHVQLGHYACLWRLPPP.YGSCLFAGS..ASPDKDLYDVFTIID....................................
B9S0N3_RICCO/156-295             .......................................vilpk------HVAFKGDNGKYLRYRG..EGGD..--EHMEFGATDIGDNKVGEQIFS--N..PDG..SICLKHDSNGKFWR.-A....T...PN.-.....-WIYPETTSASG---SDPATLFWPIKL.---QGN.AIALRSMGNDRFLRRTDYGGT.-VDCLAAASwaTTIDRQS--------hlaveeli............................
F2CYR6_HORVD/5-115               ...........................................i-HLPCCFALKSERHENYLRYVH..EDTDetTYGQLQLNGEDAVNPFTRFDSEPSQL..HEG..LVHIRCRYNRKYWVpRQ....R...GG.G.....WWIVADAHEPEEDLDSPNCTLIKPI-I.------.---------------------.---------..---------------svtnpkd.............................
F2CYR6_HORVD/212-350             .......................................rrlpr------FLVFKGHNDLYLSGVT..--IN..DTNYLQFSASDPGDPTVVHEIRY-PG..REG..VVIVRNIHLDRYWA.DT....Q...GQ.-.....-WILAL-YTPQEMQRPPVASWFTT--V.DVKDYF.AISPYDMSGTLYFLKNVTRDD.FTNCLNVD-..---------------fwnrtitadar.........................
Q71QF2_AMACA/159-299             ............................................FQFPKRYVTFKGNNGKYLGVIT..--IN..QLPCLQFGYDNLNDPKVAHEMFV--T..SNG..TICIKSTYMNKFWR.LS....T...DD.-.....-WILVDGNDPRE--TNEAAALFRS---.DVHDFN.VISLLNMQKTWFIKRFTSGKPgFINCMNAAT..QNVDETA--ILEIIE....................................
#=GR Q71QF2_AMACA/159-299  SS    ............................................G---SSSEEEE-TTS-EEEEEE..--ET..TEEEEEEEE--TT-GGG-EEEEE---..TTS..-EEEEETTTTEEEE.E-....G...GG.-.....-BEEEEE--HHH--H--GGG-EEE---.EEEETT.EEEEEETTTTEEEEEE--SSTT-SSEEEEEE..SS--GGG---EEEEE....................................
B9SC09_RICCO/3-123               ..........................................pm--LPKSVAIRSEFSRGYAYYMA..ENEA..VRGFIRCEGENILNPYVKIEVETAQI..DSK..FVHLRFSHTNKYWG.RSgpgfT...QD.D.....YWVSATSDQPEEDTSKWSCTLFEPIF-.------.---------------------.---------..---------------dhgflflrhvqtggrv....................
D7U3H5_VITVI/1-152               ...........................................m-ALPRYVVLKSKYNDKYLRYIH..EDVQ..IHGFLQFSGEEVVTPYSKYQVERAKN..GKG..LVHIRCCYNNKYWV.RW....S...KN.H.....WWIVAGADEPDEDQSSWSCTLFEPVHV.D-GNAQ.TLRFRHVQLGHYACLWRLPPP.YGSCLFAGS..ASPNKDLCDVCTIID....................................
B9S0N4_RICCO/158-293             ........................................vilp----K-HVVFKGDNGKYLRYRG..EGGD..--DHMEFGSDDIGATKVANEVFT--N..FDG..SIRVKHDYNGKFWK.-A....T...PN.-.....-WIYPVSTDTSA----TPETSFWP--V.NLQKDN.LIALKNLGNDRFCRRTNYGGT.-VDCLAAAS..---------------wattidleanlav.......................
Q38719_AMAHP/159-299             ............................................FQFPKTYVTFKGNNGKYLGVIT..--IN..QLPCLQFGYDNLNDPKVAHQMFV--T..SNG..TICIKSNYMNKFWR.LS....T...DN.-.....-WILVDGNDPRE--TNEAAALFRS---.DVHDFN.VISLLNMQKTWFIKRFTSGKPeFINCMNAAT..QIVDETA--ILEIIE....................................
Q71QF2_AMACA/2-154               ............................................AGLPVIMCLKSNNNQKYLRYQS..DNIQ..QYGLLQFSADKILDPLAQFEVEPSKT..YDG..LVHIKSRYTNKYLV.RW....S...PN.H.....YWITASANEPDENKSNWACTLFKPLYV.EEGNMK.KVRLLHVQLGHYTQNYTVGGS.FVSYLFAES..SQIDTGSKDVFHVID....................................
#=GR Q71QF2_AMACA/2-154    SS    ............................................--S-SEEEEEETTT--EEEE--..SSST..TTTBEEEEESSTT-TT--EEEEE-SS..STT..-EEEEETTT--EEE.ES....S...TT.-.....-BEEEEESS----TTSTT---EEEEES.STT-TT.EEEEEETTTTEEEEEE--STT.B-SEEEEEE..SS--TT-TT-EEEEE....................................
D8SQA4_SELML/144-278             .......................................vrlpd------YIWLKGNNGKYVHLHY..--ER..DLNWLKFHGDSPSDDWGTNQVIP--L..LDG..SVALYNVKAGKFWR.NS....T...-N.-.....-WIWADVNKQEDAESNPRCH-FEPLKL.G---SE.IVALKNQFNGLFCKRLTD--Y.WQSCLNAG-..---------------tgspndsearli........................
I1H3D5_BRADI/37-153              .......................................rfafk------------SNSKYLRYLPagGQIQ..KESNLAMTGEDAKNPYSRFCSEPSRKhgNKG..LVHIRCCYNNKYWV.AG....D...GGpP.....ITIFCSANEPQDDPSKPYCTLFRPLYH.SGSTEE.---------------------.---------..---------------lvsfhymdgia.........................
B6STM7_MAIZE/55-193              ..........................................ld--LPK-YVCFKGDNGLYLSART..--VE..GHPYLQFASEDIGDPSVRFITYNHKV..-NGkrVVRFKSNHLGKFWR.R-....S...PN.-.....-WIWADTDDTS---TNNSDTLFEVIKI.DEDGVY.--ALRNLGNNHFCHRLTYDGK.-ESCLNATI..PTIR-----------keahikie............................
I1H3D5_BRADI/188-327             .......................................mvlpe------HVCFRGDNGMYLRAVD..----..AMGRLQFSSNDIADPRAKQTIVA--D..QDG..TICIKNNYLDKFWR.FNe..pS...DG.D.....YGIYADAKDKRM-----YDTIFHLVKL.DNNEIA.LQVKDRMRNKIYCQRVT----.---------..---------------yndktrdllctstksimkearlqmh...........
F6HZZ6_VITVI/1-152               ...........................................m-ALPRYVVLKSKYNNKYLRYIH..EDVQ..IHGFLQFSGEEVVTPYSKYQVERAKN..GGG..LVHIRCCYNNKYWV.RW....S...KN.H.....WWIVAGADEPDEDQSSWSCTLFEPVHV.D-GDAQ.TLRFRHVQLGHYACLWRLPPP.YGSCLFAGS..TSADNDLCDVCTIID....................................
D7U3H9_VITVI/1-152               ...........................................m-ELPRYVVFKSKYNNKCLRYIH..EDGE..IHGFLQFSGEEVMTPYSKYHVEMAKN..GKG..LVHIRCCYNNKYWV.RW....S...EN.H.....WWIVAGADETDEDQSLWTCTLFEPVYV.D-GDAQ.TLRFRHVQLGHYACLWRLPPP.YGSCLFAGS..ASPDKDLYDVFTIID....................................
B9SC09_RICCO/162-299             ......................................cilpkr-------VAFRGYNDMYLKAEW..--IE..RHEYLQFSSDDVNEKAAGYEITM--M..PDG..HVRLRSNFFNKFWR.R-....S...PN.-.....-WIWADSTDTVG---SDRDTLFWPVKV.--ND-D.TIALRNAGNNRFCSSLTAERK.-TDCLNAAV..ATITREA--------rlqveelv............................
B9RI90_RICCO/112-250             ........................................vifp----K-HVAFKGDNGKYLRYRS..EGGD..QH--MDFGATDIGDNRVGEKIVS--N..PDQ..SICVKHDSNGRFWR.-A....T...PN.-.....-WIYPDTTDASN---SDPATLFWPVK-.--LQGN.AIALRSMGNDRFLHRTDYGGT.-VDCLAAAFwiTTIDKQS--------hlavqvl.............................
Q8S390_AMAHP/159-299             ............................................FQFPKTYVTFKGNNGKYLGVIT..--IN..QLPCLQFGYDNLNDPKVAHQMFV--T..SNG..TICIKSNYMNKFWR.LS....T...DN.-.....-WILVDGNDPRE--TNEAAALFRS---.DVHDFN.VISLLNMQKTWFIKRFTSGKPeFINCMNAAT..QIVDETA--ILEIIE....................................
#=GC SS_cons                     ............................................G-S-SCCEEEETTTS-EEEEEE..SSCT..TCCEEEEEESSTT-CCG-EEEEE-SS..TTT..-EEEEETTTTEEEE.ES....C...CC.-.....-BEEEEESSHHH-TCSTCGG-EEEEES.CCCETT.EEEEEETTTTEEEEEE--STTTBSSEEEEEE..SS--CCGTT-EEEEE....................................
#=GC seq_cons                    ..................................................hlhhpssNscYLphhs....hp..thshLpFuu--lsDPhstapl.s..s..tcG..hV+I+ssahsKaW+.c.....o...sN........WIhAsus-scp..os.ssTLFcPlhl.-.tphp.hlthpphttspaspphs......hsCL.Ass..tp.p...............................................
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