GenomeNet

Database: Pfam
Entry: B
LinkDB: B
Original site: B 
#=GF ID   B
#=GF AC   PF02216.15
#=GF DE   B domain
#=GF AU   Bateman A
#=GF SE   Pfam-B_1782 (release 5.2)
#=GF GA   22.40 22.40;
#=GF TC   24.20 24.50;
#=GF NC   22.30 20.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   SpAB_protein_domain
#=GF RN   [1]
#=GF RM   1390743
#=GF RT   Three-dimensional solution structure of the B domain of
#=GF RT   staphylococcal protein A: comparisons of the solution and
#=GF RT   crystal structures. 
#=GF RA   Gouda H, Torigoe H, Saito A, Sato M, Arata Y, Shimada I; 
#=GF RL   Biochemistry 1992;31:9665-9672.
#=GF DR   INTERPRO; IPR003132;
#=GF DR   SCOP; 1bdc; fa;
#=GF CC   This family contains the B domain of Staphylococcal protein A,
#=GF CC   which specifically binds to the Fc portion of immunoglobulin G.
#=GF SQ   22
#=GS SPA_STAA8/213-265         AC P02976.3
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z f; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y4Y B; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z m; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z g; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y4Y M; 73-96;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z C; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y4Y A; 73-98;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z i; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y4Y d; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z t; 72-98;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z V; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z X; 137-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z G; 104-123;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z Z; 104-121;
#=GS SPA_STAA8/213-265         DR PDB; 4Y4Y D; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z k; 72-78;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z p; 104-118;
#=GS SPA_STAA8/213-265         DR PDB; 4Y4Y Y; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z A; 72-77;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z o; 114-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z n; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z M; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z J; 104-150;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z z; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z R; 130-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z y; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z 4; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y4Y W; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z c; 104-142;
#=GS SPA_STAA8/213-265         DR PDB; 4Y4Y Q; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z 7; 72-94;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z b; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z l; 104-147;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z s; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y4Y K; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y4Y a; 104-149;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z S; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y4Y L; 104-151;
#=GS SPA_STAA8/213-265         DR PDB; 4Y5Z D; 104-151;
#=GS A0A0A8HQ03_STAHY/290-342  AC A0A0A8HQ03.1
#=GS A0A0A8HQ03_STAHY/236-288  AC A0A0A8HQ03.1
#=GS A0A0A8HQ03_STAHY/109-160  AC A0A0A8HQ03.1
#=GS SPA_STAA8/271-323         AC P02976.3
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z U; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z f; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y4Y B; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z m; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z g; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z C; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y4Y N; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z i; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y4Y V; 133-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z F; 123-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y4Y d; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z a; 148-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z V; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z X; 137-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z Z; 104-121;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z G; 104-123;
#=GS SPA_STAA8/271-323         DR PDB; 4Y4Y D; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y4Y O; 122-131;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z p; 104-118;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z W; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y4Y Y; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z o; 114-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z n; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z J; 104-150;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z M; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z z; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z R; 130-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z y; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y4Y W; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z 4; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z u; 134-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z c; 104-142;
#=GS SPA_STAA8/271-323         DR PDB; 4Y4Y Q; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z b; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z l; 104-147;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z s; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y4Y K; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y4Y a; 104-149;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z S; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y4Y L; 104-151;
#=GS SPA_STAA8/271-323         DR PDB; 4Y5Z D; 104-151;
#=GS A0A0A8HQ03_STAHY/55-108   AC A0A0A8HQ03.1
#=GS SBI_STAA8/44-95           AC Q2FVK5.1
#=GS A0A0A8HLP7_STAHY/42-94    AC A0A0A8HLP7.1
#=GS E5D8F1_STAHY/212-264      AC E5D8F1.1
#=GS SPA_STAA8/155-207         AC P02976.3
#=GS E8SHU1_STAPH/97-148       AC E8SHU1.1
#=GS E5D8F1_STAHY/37-88        AC E5D8F1.1
#=GS A0A0A8HLP7_STAHY/93-144   AC A0A0A8HLP7.1
#=GS SPA_STAA8/97-149          AC P02976.3
#=GS SPA_STAA8/97-149          DR PDB; 1DEE H; 2803-2852;
#=GS SPA_STAA8/97-149          DR PDB; 1DEE G; 1806-1852;
#=GS E5D8F1_STAHY/95-147       AC E5D8F1.1
#=GS G0QN47_ICHMG/143-176      AC G0QN47.1
#=GS B9DMP7_STACT/22-73        AC B9DMP7.1
#=GS SBI_STAA8/96-148          AC Q2FVK5.1
#=GS B9DMP7_STACT/74-126       AC B9DMP7.1
#=GS SPA_STAA8/36-88           AC P02976.3
#=GS E8SHU1_STAPH/47-95        AC E8SHU1.1
#=GS E5D8F1_STAHY/154-206      AC E5D8F1.1
SPA_STAA8/213-265                    ........DNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDP..SQSANLLAEAKKLNDA.....
#=GR SPA_STAA8/213-265         SS    ........XXXXXXXXXXXXXXXXXXXXXXXXXX--EEEEEEEEE..EEEEEE-SS-EEEEEE.....
A0A0A8HQ03_STAHY/290-342             ........NPERRVAQRKAYINLLENNKLPIGDLERLVKELHKNP..DHAQQIWIESHRLSNA.....
A0A0A8HQ03_STAHY/236-288             kqeeqhvv--------QKAFQFLLQLKGLDEKQRSEFLKQLHENPtkETAQNVFSEASK----dv...
A0A0A8HQ03_STAHY/109-160             ........NPERRLAQRNAYFSVVNNPNLSSADRERYIDKIIENP..DHSQQTWIESNR----vps..
SPA_STAA8/271-323                    ........DNKFNKEQQNAFYEILHLPNLTEEQRNGFIQSLKDDP..SVSKEILAEAKKLNDA.....
#=GR SPA_STAA8/271-323         SS    ........H-HHHHHHHTTEEEEEEEEXXXXXEEEEEEE-S-TT-..--EEEEEEESSTTS--.....
A0A0A8HQ03_STAHY/55-108              ......rq--NDHKDVQRAYYHLIHLKGIDEAQRGRFLKQLHDNPtkETAQNVFSESTK----dvn..
SBI_STAA8/44-95                      ........QNNYVTDQQKAFYQVLHLKGITEEQRNQYIKTLREHP..ERAQEVFSESLKDS--k....
A0A0A8HLP7_STAHY/42-94               ....qtsd----VTDAQRAFYKVLHLEGITEEQRNHYIQTLRTQP..ERAQEVFSESIKDS--nn...
E5D8F1_STAHY/212-264                 ........ENNFNEAQQNAFYEILHLPYLTEEQRNGFIQSLKDDP..SVSNDILAEAKKLNDS.....
SPA_STAA8/155-207                    ........DNNFNKEQQNAFYEILNMPNLNEEQRNGFIQSLKDDP..SQSANLLSEAKKLNES.....
E8SHU1_STAPH/97-148                  .......h-PERRVAQQNAFYSVLHNDDLSEEQRDAYIGRIKEDP..DQSQEVFVESLN----vap..
E5D8F1_STAHY/37-88                   ....tspv-----DAQQNAFYEIVNLPNLTDEQRNGYIQSLKDDP..SVSANILQQAQATN--an...
A0A0A8HLP7_STAHY/93-144              ......nn-QERRAGQQNAFYEILNNENLSENQKTEALAEIQKNP..DKSQDVWYQ-------tlhte
SPA_STAA8/97-149                     ........QNNFNKDQQSAFYEILNMPNLNEAQRNGFIQSLKDDP..SQSTNVLGEAKKLNES.....
#=GR SPA_STAA8/97-149          SS    ........XXXXXHHHHHHHHHHCC-SSS-HHHHHHHHHHHHH-G..GGHHHHHHHHHHHHHH.....
E5D8F1_STAHY/95-147                  .......a-PNFDAAQQNAFYEIVNLPNLTDEQRNGYIQSLKDDP..SVSADILQQAQATN--an...
G0QN47_ICHMG/143-176                 .....nac---WDVKQQCGYYNVIGSDNISVEERNNYIKQ-----..----------------se...
B9DMP7_STACT/22-73                   ....etgv-----TGQQQAFYELLKMDNLTEQRKNDYIDTIKVNP..QASQEVFASAIKEN--rn...
SBI_STAA8/96-148                     ........NPDRRVAQQNAFYNVLKNDNLTEQEKNNYIAQIKENP..DRSQQVWVESVQSSKA.....
B9DMP7_STACT/74-126                  ....stev----RDGQQNAFVNIYHNEHLINEQKDVLIEELKDHP..DRAQNIFTKSLKQ---qnl..
SPA_STAA8/36-88                      .......a-AQHDEAQQNAFYQVLNMPNLNADQRNGFIQSLKDDP..SQSANVLGEAQKLNDS.....
E8SHU1_STAPH/47-95                   ...invtp-------DQKTFYQVLHMEGISEDQREQYLKQLHEDP..SSAQNVFSESIK----da...
E5D8F1_STAHY/154-206                 .......a-PNFDAAQQNAFYEILNLPYLSEEQRNGFIQSLKDDP..SVSNDILAEAKKANDA.....
#=GC SS_cons                         ........HXHHHHHHHCCCCCCCCECSS-HHCCCCEEECCCCCC..CCEEEECCCCCCCCCC.....
#=GC seq_cons                        ..........phptsQQsAFYplLphssLoE-QRNsaIppL+-sP..spSpplhsEuhK.s.......
//
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