GenomeNet

Database: Pfam
Entry: B
LinkDB: B
Original site: B 
#=GF ID   B
#=GF AC   PF02216.13
#=GF DE   B domain
#=GF AU   Bateman A
#=GF SE   Pfam-B_1782 (release 5.2)
#=GF GA   22.40 22.40;
#=GF TC   24.20 25.70;
#=GF NC   21.50 19.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   SpAB_protein_domain
#=GF RN   [1]
#=GF RM   1390743
#=GF RT   Three-dimensional solution structure of the B domain of
#=GF RT   staphylococcal protein A: comparisons of the solution and
#=GF RT   crystal structures. 
#=GF RA   Gouda H, Torigoe H, Saito A, Sato M, Arata Y, Shimada I; 
#=GF RL   Biochemistry 1992;31:9665-9672.
#=GF DR   INTERPRO; IPR003132;
#=GF DR   SCOP; 1bdc; fa;
#=GF CC   This family contains the B domain of Staphylococcal protein A,
#=GF CC   which specifically binds to the Fc portion of immunoglobulin G.
#=GF SQ   12
#=GS SPA_STAA8/213-265     AC P02976.3
#=GS E8SHU1_STAPH/97-148   AC E8SHU1.1
#=GS SPA_STAA8/97-149      AC P02976.3
#=GS SPA_STAA8/97-149      DR PDB; 1DEE G; 2803-1852;
#=GS SPA_STAA8/97-149      DR PDB; 1DEE H; 2803-2852;
#=GS SPA_STAA8/271-323     AC P02976.3
#=GS G0QN47_ICHMG/143-176  AC G0QN47.1
#=GS B9DMP7_STACT/22-73    AC B9DMP7.1
#=GS SBI_STAA8/44-95       AC Q2FVK5.1
#=GS SPA_STAA8/155-207     AC P02976.3
#=GS SBI_STAA8/96-148      AC Q2FVK5.1
#=GS B9DMP7_STACT/74-126   AC B9DMP7.1
#=GS SPA_STAA8/36-88       AC P02976.3
#=GS E8SHU1_STAPH/47-95    AC E8SHU1.1
SPA_STAA8/213-265                .....DNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDA...
E8SHU1_STAPH/97-148              ....h-PERRVAQQNAFYSVLHNDDLSEEQRDAYIGRIKEDPDQSQEVFVESLN----vap
SPA_STAA8/97-149                 .....QNNFNKDQQSAFYEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNES...
#=GR SPA_STAA8/97-149      SS    .....HHHHHHHHHHCC-SSS-HHHHHHHHHHHHH-GGGHHHHHHHHHHHHHHXXXXX...
SPA_STAA8/271-323                .....DNKFNKEQQNAFYEILHLPNLTEEQRNGFIQSLKDDPSVSKEILAEAKKLNDA...
G0QN47_ICHMG/143-176             ..nac---WDVKQQCGYYNVIGSDNISVEERNNYIKQ---------------------se.
B9DMP7_STACT/22-73               .etgv-----TGQQQAFYELLKMDNLTEQRKNDYIDTIKVNPQASQEVFASAIKEN--rn.
SBI_STAA8/44-95                  .....QNNYVTDQQKAFYQVLHLKGITEEQRNQYIKTLREHPERAQEVFSESLKDS--k..
SPA_STAA8/155-207                .....DNNFNKEQQNAFYEILNMPNLNEEQRNGFIQSLKDDPSQSANLLSEAKKLNES...
SBI_STAA8/96-148                 .....NPDRRVAQQNAFYNVLKNDNLTEQEKNNYIAQIKENPDRSQQVWVESVQSSKA...
B9DMP7_STACT/74-126              .stev----RDGQQNAFVNIYHNEHLINEQKDVLIEELKDHPDRAQNIFTKSLKQ---qnl
SPA_STAA8/36-88                  ....a-AQHDEAQQNAFYQVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAQKLNDS...
E8SHU1_STAPH/47-95               invtp-------DQKTFYQVLHMEGISEDQREQYLKQLHEDPSSAQNVFSESIK----da.
#=GC SS_cons                     .....HHHHHHHHHHCC-SSS-HHHHHHHHHHHHH-GGGHHHHHHHHHHHHHHXXXXX...
#=GC seq_cons                    ......sphpptQQsAFYplL+hsNLsE-QRNsaIppLK-cPspSpplhuEuhK.s.....
//
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