GenomeNet

Database: Pfam
Entry: BamHI
LinkDB: BamHI
Original site: BamHI 
#=GF ID   BamHI
#=GF AC   PF02923.13
#=GF DE   Restriction endonuclease BamHI
#=GF AU   Griffiths-Jones SR
#=GF SE   Structural domain
#=GF GA   22.80 22.80;
#=GF TC   23.00 29.50;
#=GF NC   21.20 21.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   BamHI
#=GF RN   [1]
#=GF RM   8145855
#=GF RT   Structure of restriction endonuclease BamHI and its relationship
#=GF RT   to EcoRI. 
#=GF RA   Newman M, Strzelecka T, Dorner LF, Schildkraut I, Aggarwal AK; 
#=GF RL   Nature 1994;368:660-664.
#=GF DR   INTERPRO; IPR004194;
#=GF DR   SCOP; 1bhm; fa;
#=GF SQ   18
#=GS K9PPX3_9CYAN/2-158      AC K9PPX3.1
#=GS A9B1V1_HERA2/1-20       AC A9B1V1.1
#=GS A8ZWD9_DESOH/1-96       AC A8ZWD9.1
#=GS M1PEY9_DESSD/2-159      AC M1PEY9.1
#=GS B8J492_DESDA/2-162      AC B8J492.1
#=GS E0UBP8_CYAP2/2-158      AC E0UBP8.1
#=GS K9WUX4_9NOST/16-172     AC K9WUX4.1
#=GS K2BLP0_9BACT/2-164      AC K2BLP0.1
#=GS I4EF70_9CHLR/6-154      AC I4EF70.1
#=GS V4JFD4_9GAMM/5-166      AC V4JFD4.1
#=GS G4KT14_OSCVS/16-166     AC G4KT14.1
#=GS L0AI53_NATGS/2-102      AC L0AI53.1
#=GS K9ZPM6_ANACC/2-158      AC K9ZPM6.1
#=GS L0AI53_NATGS/109-187    AC L0AI53.1
#=GS A0A0F4QNU8_9GAMM/2-159  AC A0A0F4QNU8.1
#=GS A9B1V0_HERA2/2-97       AC A9B1V0.1
#=GS K9XGD6_9CHRO/2-158      AC K9XGD6.1
#=GS Q2SJ83_HAHCH/13-166     AC Q2SJ83.1
K9PPX3_9CYAN/2-158                 ...............KIVQEVSLISVGSFEESRDWSIIRTEIRDAISLIVHPPGTSSFTINPKR......HGNGVKPIKEACMIALRDRfTWRLETPINY..-ATK.SPGKVDAT.KVI.DN....YLFALEWETGNISSSHRAVNKMVLGLLRGVFLGTALVLPSRKIYPYLTDRIGNYEELEPYFD........................
A9B1V1_HERA2/1-20                  ...............-------------------------------------------------......-------------------.----------..----.--------.---.--....------------------------------------------MYKYLTDRIGNYTEIEPYFD........................
A8ZWD9_DESOH/1-96                  ...............-------------------------------------------------......------------MKKLQSS.GWRLETPVDV..ATVR.RPGPMDAT.IEV.NG....RLFCVEWETGNISSSHRAVNKMALGILKDILIGGVLILPTRKMYNYLTDRIGNFLELSPYFP........................
M1PEY9_DESSD/2-159                 ...............KILRTEVLISKGSFPKSDELETLLHDVYHAIKKVSWPPDSDIFTLNPVK......KGNGVKPIKTNCMIHLEEQ.GWILEHPMAL..GARI.KPGPVDAVlKLN.NG....KYFAVEWETGNISSSHRAVNKLAIGLLENVLEGGLLILPSRDMYQYLTDRIGNYAELAPYFP........................
B8J492_DESDA/2-162                 ..............n-IARNECLFSYGQFPNSAVWNNSFSMLINLIQGMEHPVGAGLFAIFPQSgk.khgEGNGVKPIKEILMSRIPLD.-WQREGSLRV..PGEA.NPGKIDIL.YSL.EG....HNIGIEWETGNVSSSHRAINKMLLGIDRGLLSVGILIVPVKNFAQYLTDRIGNFEELEPYFP........................
E0UBP8_CYAP2/2-158                 ...............KIVKEISLISVGNFEESRDWSIIRSEIRRAIALIVHPRGESSFIINPTR......HGNGVKPIKEACMIALRDQfGWRLETRVNY..-ATK.SPGKVDAT.KVI.DD....YLFALEWETGNISSSHRAVNKLVLGLLRGVFLGAALVLPSRKLYAYLTDRIGNYEELEPYFD........................
K9WUX4_9NOST/16-172                ...............KIVQEVSLISVGSFAESNDWSIIRTEIRDAISLIVHPPGTSSFTINPKK......HGNGVKPIKEACMIALRDKfGWKLETSVNY..-ATK.SPGKVDAT.KVM.DN....YLFALEWETGNISSSHRAVNKMVLGLLRGVFLGTALVLPSRKIYPYLTDRIGNYEELEPYFD........................
K2BLP0_9BACT/2-164                 ...............KIIHQQYIVKKGKLAESEEIKEIQREIAAAVKAIVWPENRDGFYLNPGSkgkgrgEGNGVKPIKDACITYLKGK.GWKEEYRVKE..RKIA.GTGPLDAA.KET.PY....GLFAIEWETGNISSSHRALNKICLGVLNGELAGGVLVLPSKELYPFLTDRIGNYREITPYLP........................
I4EF70_9CHLR/6-154                 ......tyllqmhep-------------IASSGEWKRIQADLAAAIASIAWPEGSDRFTINPVK......MGNGVVPIREAFQQGLNDL.GWAVEQQSV-..---P.NVGDVDAA.LDT.PI....GTFAMEWETGNISSSHRSLNRLSLGILSGSLVGGVLVLPSRKLYRYLTDRVGNVPELMPYFP........................
V4JFD4_9GAMM/5-166                 ...lleyhdilnpvl-------------FSRSPALQQAWVDVQQAVAATDWPHGTGSFSIYPESgk.ksrEGNGVKLIKVPCIRALHAR.GWMTERLPDV..GSSVlRTEDLDAL.KST.PD....GWIAFEGETGNISSSHRALNKLFLTMKETNTIGSFLVVPSNRLKLFLTDRIGNIGELEPYFS........................
G4KT14_OSCVS/16-166                .....mrtcpaavea-----------------------YHEVEQSIIENTTP-GKDIFILNDTS.....kNCNGVVPVKERCYQILEEDhLWYREKPLSYfhDDAQ.KGGPIDVY.KEF.RTpsgfFRAGLEFETGNISSAHRSMNKLCVGILKGEIDLAMLMMPIKQMSYYLTDRVSNYEELEPYF-i.......................
L0AI53_NATGS/2-102                 ..............e-ISHTYTILDEGEFPNTAIWSEGREDVLDSVRDVYWPPRNDEFLVYPEE......NENGVNPITEQFEANLDKKsNWESTGRK--..----.--------.---.--....--------------------------------------------------------------wlsglleergildetlekmgeyyd
K9ZPM6_ANACC/2-158                 ...............KIVQEVSLISVGSFEESRDWSIIRSEIRDAISLIVHPPGTPNFTINPKR......HGNGVKPIKEACMIALRDRfRWRLETPINY..-STK.SPGRVDAT.KVI.DN....YLFALEWETGNISSSHRAVNKMVLGLLRGVFLGTALVLPSRKIYPYLTDRIGNYEELEPYFD........................
L0AI53_NATGS/109-187               sspwfdamkevemer-------------------------------------------------......-------------------.----------..----.--------.---.EQ....GLIVAEWETGNISSSHRSLNRITLGLMSGIIHGGLIVLPNRDLYYYLTDRIGNYRELVPYF-v.......................
A0A0F4QNU8_9GAMM/2-159             ...............KITRTEVLINSGGFFDTQQFNDVLAEIEESISKVVWPLNSQYFSINPTK......KGNGVKPIKNGCMSHLEGL.GWQLEERLRI..TSTM.RPGPLDAV.KTLpNG....SVLALEWETGNISSSHRALNKMVLGILEGALTGGILILPSRAMYKYLTDRIGNFQEIEPYFP........................
A9B1V0_HERA2/2-97                  ...............KIIHEERLIDAGNFSLTTDWNTIYADIIEAIATIRWPTNGAVFSLNPID......KGNGVKPIKTACMDHLAKK.GWLLEHSIDI..ATAK.KPGPMDAS.YK-.--....--------------------------------------------------------------tpns....................
K9XGD6_9CHRO/2-158                 ...............KIVQEISLISVGGFEESGDWSIVRAEIREAISLIVHPPGASNFTINPTK......HGNGVKPIKEAGMIALKDRfGWRLETSINY..-ATR.SPGKVDAT.KVL.DS....YLFALEWETGNISSSHRAINKMVLGLLRGVFLGAVLVLPSRKLYPYLTDRIGNYEELEPYFD........................
Q2SJ83_HAHCH/13-166                ...............RITNHEILVKTGTVPN---LYSIIKEVEAVIKMVVWPLKNDNFAINPTR......KGNGVKPIKNECMEHLKLN.GWHLEKRLTI..KADM.KPGPLDAV.KMI.GG....KAFALEWETENISSSHRAINKMVLGMLERVIIGGILILPSRAMYNYLTDRVGNFQELKPYFS........................
#=GC seq_cons                      ................Ihpp..llp.GtF.potthp.lht-ltpuIthlsaP.sss.FslNPpc......cGNGVKPIKpsCM.tLcpp.GWplEp.lsh...ssh.pPG.lDAs.K.h.ss....hhhAlEWETGNISSSHRAlNKhsLGlLcGhhhGuhLlLPSRchY.YLTDRIGNapELcPYFs........................
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