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Database: Pfam
Entry: BamHI
LinkDB: BamHI
Original site: BamHI 
#=GF ID   BamHI
#=GF AC   PF02923.11
#=GF DE   Restriction endonuclease BamHI
#=GF AU   Griffiths-Jones SR
#=GF SE   Structural domain
#=GF GA   22.80 22.80;
#=GF TC   22.90 22.90;
#=GF NC   21.20 21.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   BamHI
#=GF RN   [1]
#=GF RM   8145855
#=GF RT   Structure of restriction endonuclease BamHI and its relationship
#=GF RT   to EcoRI. 
#=GF RA   Newman M, Strzelecka T, Dorner LF, Schildkraut I, Aggarwal AK; 
#=GF RL   Nature 1994;368:660-664.
#=GF DR   INTERPRO; IPR004194;
#=GF DR   SCOP; 1bhm; fa;
#=GF SQ   33
#=GS G0IPC3_BACAM/8-167    AC G0IPC3.1
#=GS K9PPX3_9CYAN/2-158    AC K9PPX3.1
#=GS L4ZFB1_ECOLX/154-233  AC L4ZFB1.1
#=GS L0CXE9_BACIU/2-135    AC L0CXE9.1
#=GS M6DQZ6_9LEPT/2-163    AC M6DQZ6.1
#=GS F4EMF2_BACAM/8-167    AC F4EMF2.1
#=GS K9WUX4_9NOST/16-172   AC K9WUX4.1
#=GS I4EF70_9CHLR/6-154    AC I4EF70.1
#=GS L0AI53_NATGS/2-102    AC L0AI53.1
#=GS L0AI53_NATGS/109-187  AC L0AI53.1
#=GS K9ZPM6_ANACC/2-158    AC K9ZPM6.1
#=GS A9B1V0_HERA2/2-97     AC A9B1V0.1
#=GS Q2SJ83_HAHCH/13-166   AC Q2SJ83.1
#=GS K9XGD6_9CHRO/2-158    AC K9XGD6.1
#=GS F4EBG5_BACAM/8-167    AC F4EBG5.1
#=GS W1V5Q1_ECOLX/154-233  AC W1V5Q1.1
#=GS A9B1V1_HERA2/1-20     AC A9B1V1.1
#=GS M1PEY9_DESSD/2-159    AC M1PEY9.1
#=GS A8ZWD9_DESOH/1-96     AC A8ZWD9.1
#=GS L0CXE9_BACIU/110-238  AC L0CXE9.1
#=GS E2JKI3_9GAMM/2-155    AC E2JKI3.1
#=GS B8J492_DESDA/2-162    AC B8J492.1
#=GS T2BA_BACAM/8-167      AC P23940.1
#=GS T2BA_BACAM/8-167      DR PDB; 1ESG A; 8-167;
#=GS T2BA_BACAM/8-167      DR PDB; 3BAM B; 8-167;
#=GS T2BA_BACAM/8-167      DR PDB; 1ESG B; 8-167;
#=GS T2BA_BACAM/8-167      DR PDB; 1BHM B; 8-167;
#=GS T2BA_BACAM/8-167      DR PDB; 2BAM A; 8-167;
#=GS T2BA_BACAM/8-167      DR PDB; 1BHM A; 8-167;
#=GS T2BA_BACAM/8-167      DR PDB; 1BAM A; 8-167;
#=GS T2BA_BACAM/8-167      DR PDB; 3BAM A; 8-167;
#=GS T2BA_BACAM/8-167      DR PDB; 2BAM B; 8-167;
#=GS E0UBP8_CYAP2/2-158    AC E0UBP8.1
#=GS K2BLP0_9BACT/2-164    AC K2BLP0.1
#=GS E1UQE5_BACAS/8-167    AC E1UQE5.1
#=GS V4JFD4_9GAMM/5-166    AC V4JFD4.1
#=GS W4LFL9_9DELT/2-159    AC W4LFL9.1
#=GS G4KT14_OSCVS/16-166   AC G4KT14.1
#=GS F5UFH9_9CYAN/2-158    AC F5UFH9.1
#=GS Q9RM91_BACSP/2-157    AC Q9RM91.1
#=GS C7BP10_PHOAA/160-235  AC C7BP10.1
#=GS U1LCR2_9GAMM/161-228  AC U1LCR2.1
G0IPC3_BACAM/8-167               ......................................itdeakellskd-----------------KLI.QQAYNEVKTSICSPIWPATSKTFTINNTE.........kNCNGV.VPIKELCYTLLEDTyNWYREKPLDI..LklE.KK.KGGPIDVY.KeF.I....E...Ns.elK...RVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMP..I.KQ..LAYY...LTDRVTNFEELEPYFE.................................
#=GR G0IPC3_BACAM/8-167    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
K9PPX3_9CYAN/2-158               ..................................................KIVQEVSLISVGSFEESRDW.SIIRTEIRDAISLIVHPPGTSSFTINPKR..........HGNGV.KPIKEACMIALRDRfTWRLETPINY..-..A.TK.SPGKVDAT.K.V.I....D...N....Y...LFALEWETGNISSSHRAVNKMVLGLLRGVFLGTALVLP..S.RK..IYPY...LTDRIGNYEELEPYFD.................................
#=GR K9PPX3_9CYAN/2-158    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
L4ZFB1_ECOLX/154-233             .............................................iehlf--------------------.-----------------------------..........-----.--------------.----------..-..-.--.-----DIE.K.V.N....Y...H....Y...KIGIEFETGNVASSFRAINKLNNLFHDGHIDGGCFITSidK.RN..SATRiwpVSNRNGSFQELK----nray.............................
#=GR L4ZFB1_ECOLX/154-233  pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
L0CXE9_BACIU/2-135               ..................................................KIKQGIILIDKVDAKEKKEFiDPLREQVIDSILKLRWPDDADGFYFHPKSrtytkdgkkvGGNGV.KPIKEPFIENLKNLyGWKKEFPAF-..S..S.EE.RVFKIKVL.-.-.-....-...-....-...--------------------------------------..-.--..----...----------------knfgksgnliygrvvaidrdnekiiytdrkgnk
M6DQZ6_9LEPT/2-163               ..................................................KIVHIETLISKGNFAESLDW.KYLLDGILKEVEEVDWPPGTGKFTIYPESgk.....ergKGNGV.KVIKDSFVKRLIIK.GWQAERPLNI..A..S.NK.RPGNLDLI.L.N.F....R...D....H...IIAIEWETGNISSSHRAINKMALGLIKKVISAGILVLP..S.RE..LYKF...LTDRIGNFDEIEPYS-d................................
#=GR M6DQZ6_9LEPT/2-163    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
F4EMF2_BACAM/8-167               ......................................itdeakellskd-----------------KLI.QQAYNEVKTSICSPIWPATSKTFTINNTE.........kNCNGV.VPIKELCYTLLEDTyNWYREKPLDI..LklE.KK.KGGPIDVY.KeF.I....E...Ns.elK...RVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMP..I.KQ..LAYY...LTDRVTNFEELEPYFE.................................
#=GR F4EMF2_BACAM/8-167    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
K9WUX4_9NOST/16-172              ..................................................KIVQEVSLISVGSFAESNDW.SIIRTEIRDAISLIVHPPGTSSFTINPKK..........HGNGV.KPIKEACMIALRDKfGWKLETSVNY..-..A.TK.SPGKVDAT.K.V.M....D...N....Y...LFALEWETGNISSSHRAVNKMVLGLLRGVFLGTALVLP..S.RK..IYPY...LTDRIGNYEELEPYFD.................................
#=GR K9WUX4_9NOST/16-172   pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
I4EF70_9CHLR/6-154               .........................................tyllqmhep-------------IASSGEW.KRIQADLAAAIASIAWPEGSDRFTINPVK..........MGNGV.VPIREAFQQGLNDL.GWAVEQQSV-..-..-.-P.NVGDVDAA.L.D.T....P...I....G...TFAMEWETGNISSSHRSLNRLSLGILSGSLVGGVLVLP..S.RK..LYRY...LTDRVGNVPELMPYFP.................................
#=GR I4EF70_9CHLR/6-154    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
L0AI53_NATGS/2-102               .................................................e-ISHTYTILDEGEFPNTAIW.SEGREDVLDSVRDVYWPPRNDEFLVYPEE..........NENGV.NPITEQFEANLDKKsNWESTGRK--..-..-.--.--------.-.-.-....-...-....-...--------------------------------------..-.--..----...----------------wlsglleergildetlekmgeyyd.........
L0AI53_NATGS/109-187             ...................................sspwfdamkevemer--------------------.-----------------------------..........-----.--------------.----------..-..-.--.--------.-.-.-....E...Q....G...LIVAEWETGNISSSHRSLNRITLGLMSGIIHGGLIVLP..N.RD..LYYY...LTDRIGNYRELVPYF-v................................
K9ZPM6_ANACC/2-158               ..................................................KIVQEVSLISVGSFEESRDW.SIIRSEIRDAISLIVHPPGTPNFTINPKR..........HGNGV.KPIKEACMIALRDRfRWRLETPINY..-..S.TK.SPGRVDAT.K.V.I....D...N....Y...LFALEWETGNISSSHRAVNKMVLGLLRGVFLGTALVLP..S.RK..IYPY...LTDRIGNYEELEPYFD.................................
#=GR K9ZPM6_ANACC/2-158    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
A9B1V0_HERA2/2-97                ..................................................KIIHEERLIDAGNFSLTTDW.NTIYADIIEAIATIRWPTNGAVFSLNPID..........KGNGV.KPIKTACMDHLAKK.GWLLEHSIDI..A..T.AK.KPGPMDAS.Y.K.-....-...-....-...--------------------------------------..-.--..----...----------------tpns.............................
Q2SJ83_HAHCH/13-166              ..................................................RITNHEILVKTGTVPN---L.YSIIKEVEAVIKMVVWPLKNDNFAINPTR..........KGNGV.KPIKNECMEHLKLN.GWHLEKRLTI..K..A.DM.KPGPLDAV.K.M.I....G...G....K...AFALEWETENISSSHRAINKMVLGMLERVIIGGILILP..S.RA..MYNY...LTDRVGNFQELKPYFS.................................
#=GR Q2SJ83_HAHCH/13-166   pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
K9XGD6_9CHRO/2-158               ..................................................KIVQEISLISVGGFEESGDW.SIVRAEIREAISLIVHPPGASNFTINPTK..........HGNGV.KPIKEAGMIALKDRfGWRLETSINY..-..A.TR.SPGKVDAT.K.V.L....D...S....Y...LFALEWETGNISSSHRAINKMVLGLLRGVFLGAVLVLP..S.RK..LYPY...LTDRIGNYEELEPYFD.................................
#=GR K9XGD6_9CHRO/2-158    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
F4EBG5_BACAM/8-167               ......................................itdeakellskd-----------------KLI.QQAYNEVKTSICSPIWPATSKTFTINNTE.........kNCNGV.VPIKELCYTLLEDTyNWYREKPLDI..LklE.KK.KGGPIDVY.KeF.I....E...Ns.elK...RVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMP..I.KQ..LAYY...LTDRVTNFEELEPYFE.................................
#=GR F4EBG5_BACAM/8-167    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
W1V5Q1_ECOLX/154-233             .............................................iehlf--------------------.-----------------------------..........-----.--------------.----------..-..-.--.-----DIE.K.V.N....Y...H....Y...KIGIEFETGNVASSFRAINKLNNLFHDGHIDGGCFITSidK.RN..SATRiwpVSNRNGSFQELK----nray.............................
#=GR W1V5Q1_ECOLX/154-233  pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
A9B1V1_HERA2/1-20                ..................................................--------------------.-----------------------------..........-----.--------------.----------..-..-.--.--------.-.-.-....-...-....-...--------------------------------------..-.--..MYKY...LTDRIGNYTEIEPYFD.................................
M1PEY9_DESSD/2-159               ..................................................KILRTEVLISKGSFPKSDEL.ETLLHDVYHAIKKVSWPPDSDIFTLNPVK..........KGNGV.KPIKTNCMIHLEEQ.GWILEHPMAL..G..A.RI.KPGPVDAVlK.L.N....N...G....K...YFAVEWETGNISSSHRAVNKLAIGLLENVLEGGLLILP..S.RD..MYQY...LTDRIGNYAELAPYFP.................................
#=GR M1PEY9_DESSD/2-159    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
A8ZWD9_DESOH/1-96                ..................................................--------------------.-----------------------------..........-----.-------MKKLQSS.GWRLETPVDV..A..T.VR.RPGPMDAT.I.E.V....N...G....R...LFCVEWETGNISSSHRAVNKMALGILKDILIGGVLILP..T.RK..MYNY...LTDRIGNFLELSPYFP.................................
#=GR A8ZWD9_DESOH/1-96     pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
L0CXE9_BACIU/110-238             ...................................nliygrvvaidrdne--------------------.----------------------KIIYTDR..........KGNKQeKLLYYDFESPLKDD.--ELKNKIVS..M..T.TA.KPGALDAC.K.K.A....G...D....K...LFVVEWETGNISSSHRALNKMALLLLNGHISAGILIVP..T.RK..MYPY...LTDRIGNYDELLPYFN.................................
#=GR L0CXE9_BACIU/110-238  pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
E2JKI3_9GAMM/2-155               ..................................................KIKRIEVLINNGSVPG---I.PMILNEIQDAIKTVSWPEGNNSFVINPVR..........KGNGV.KPIKNSCMRHLHQK.GWALEHPVRI..K..A.EM.RPGPLDAV.K.M.I....G...G....K...AFALEWETGNISSSHRAINKMVMGMLERVIIGGVLILP..S.RD..MYNY...LTDRVGNFRELEPYFS.................................
#=GR E2JKI3_9GAMM/2-155    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
B8J492_DESDA/2-162               .................................................n-IARNECLFSYGQFPNSAVW.NNSFSMLINLIQGMEHPVGAGLFAIFPQSgk.....khgEGNGV.KPIKEILMSRIPLD.-WQREGSLRV..P..G.EA.NPGKIDIL.Y.S.L....E...G....H...NIGIEWETGNVSSSHRAINKMLLGIDRGLLSVGILIVP..V.KN..FAQY...LTDRIGNFEELEPYFP.................................
#=GR B8J492_DESDA/2-162    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
T2BA_BACAM/8-167                 ......................................itdeakellskd-----------------KLI.QQAYNEVKTSICSPIWPATSKTFTINNTE.........kNCNGV.VPIKELCYTLLEDTyNWYREKPLDI..LklE.KK.KGGPIDVY.KeF.I....E...Ns.elK...RVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMP..I.KQ..LAYY...LTDRVTNFEELEPYFE.................................
#=GR T2BA_BACAM/8-167      SS    ......................................E-HHHHHHHHH------------------HHH.HHHHHHHHHHHH---BSTTSSSBEEE-SS.........TT-B-S.HHHHHHHHHHHHHTT--EEEEHHHH..HHTT.ST.TSS-EEEE.EEE.E....E...TT.EEE...EEEEEE--SBHHHHHHHHHHHHHHHHTTS-SEEEEEEE..-.HH..HHTT...BSTTB--HHHHGGGGG.................................
#=GR T2BA_BACAM/8-167      AS    ............................................................................................................................................................*.............................*.*...............................................................................................
E0UBP8_CYAP2/2-158               ..................................................KIVKEISLISVGNFEESRDW.SIIRSEIRRAIALIVHPRGESSFIINPTR..........HGNGV.KPIKEACMIALRDQfGWRLETRVNY..-..A.TK.SPGKVDAT.K.V.I....D...D....Y...LFALEWETGNISSSHRAVNKLVLGLLRGVFLGAALVLP..S.RK..LYAY...LTDRIGNYEELEPYFD.................................
#=GR E0UBP8_CYAP2/2-158    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
K2BLP0_9BACT/2-164               ..................................................KIIHQQYIVKKGKLAESEEI.KEIQREIAAAVKAIVWPENRDGFYLNPGSkgk....grgEGNGV.KPIKDACITYLKGK.GWKEEYRVKE..R..K.IA.GTGPLDAA.K.E.T....P...Y....G...LFAIEWETGNISSSHRALNKICLGVLNGELAGGVLVLP..S.KE..LYPF...LTDRIGNYREITPYLP.................................
#=GR K2BLP0_9BACT/2-164    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
E1UQE5_BACAS/8-167               ......................................itdeakellskd-----------------KLI.QQAYNEVKTSICSPIWPATSKTFTINNTE.........kNCNGV.VPIKELCYTLLEDTyNWYREKPLDI..LklE.KK.KGGPIDVY.KeF.I....E...Ns.elK...RVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMP..I.KQ..LAYY...LTDRVTNFEELEPYFE.................................
#=GR E1UQE5_BACAS/8-167    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
V4JFD4_9GAMM/5-166               ......................................lleyhdilnpvl-------------FSRSPAL.QQAWVDVQQAVAATDWPHGTGSFSIYPESgk.....ksrEGNGV.KLIKVPCIRALHAR.GWMTERLPDV..G..S.SVlRTEDLDAL.K.S.T....P...D....G...WIAFEGETGNISSSHRALNKLFLTMKETNTIGSFLVVP..S.NR..LKLF...LTDRIGNIGELEPYFS.................................
#=GR V4JFD4_9GAMM/5-166    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
W4LFL9_9DELT/2-159               ..................................................KLIRKEILIDQGNFRSTLEY.KGIEADISAAIARVVWPIGASTFTIYPER..........NANGV.VPIKKAFLAHLENQ.GWGLENRLDV..G..AvQK.RPGAIDAT.K.Q.I....G...S....Q...YFAVEWETGNISSSHRALNKIAIGMLRGVLVGGTLILP..T.SS..LYTY...LTDRVGNFGELEPYFD.................................
#=GR W4LFL9_9DELT/2-159    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
G4KT14_OSCVS/16-166              ........................................mrtcpaavea--------------------.---YHEVEQSIIENTTP-GKDIFILNDTS.........kNCNGV.VPVKERCYQILEEDhLWYREKPLSYfhD..D.AQ.KGGPIDVY.K.E.F....R...TpsgfF...RAGLEFETGNISSAHRSMNKLCVGILKGEIDLAMLMMP..I.KQ..MSYY...LTDRVSNYEELEPYF-i................................
#=GR G4KT14_OSCVS/16-166   pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
F5UFH9_9CYAN/2-158               ..................................................KIVQEVSLISRGSFEESEEW.GVIKNEIRIAIDAIAWPVGASNFTINPTR..........HGNGV.KPIKNACMAALHDNfGWQLETKIRF..-..A.TR.APGRVDAT.K.I.L....D...N....H...LFAFEWETGNISSSHRAVNKLVLGILRGIFLGTALVLP..S.RQ..LYPY...LTDRIGNYEELEPYFD.................................
#=GR F5UFH9_9CYAN/2-158    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
Q9RM91_BACSP/2-157               .................................................k-VKNVEVLIDKGR--NTQEI.ESIKAHVLNSIENMQYPANSGAFHLYGGK..........KANGV.KPIKDSYMMHQQEH.GWILEYKLDV..G..VtNS.RPGPIDAV.L.P.V....S...D....K...YFAVEWETGNIASSHRAINKMIVGMLNGKLIGGILILP..S.RE..MYDY...LTDRVGNFRELSPYFD.................................
#=GR Q9RM91_BACSP/2-157    pAS   ............................................................................................................................................................*.............................*.*...............................................................................................
C7BP10_PHOAA/160-235             ...........................................feekyvs--------------------.-----------------------------..........-----.--------------.----------..-..-.--.--------.-.-.-....Y...R....Y...KIGVEFETGNVASSFRAINKLNGLFHQGQIDGGCFITS..I.DKksSATRiwpVSNRNGSFQELK----nrsy.............................
U1LCR2_9GAMM/161-228             ...........................................eeivtsh--------------------.-----------------------------..........-----.--------------.----------..-..-.--.--------.-.-.-....-...-....F...RVGVEFETGNVASSFRAINKLGILYQQGFIDAGVFVTS..AsRP..RIWP...TSNRNGSFPEL-----inr..............................
#=GC SS_cons                     ......................................E-HHHHHHHHH------------------HHH.HHHHHHHHHHHH---BSTTSSSBEEE-SS.........TT-B-S.HHHHHHHHHHHHHTT--EEEEHHHH..HHTT.ST.TSS-EEEE.EEE.E....E...TT.EEE...EEEEEE--SBHHHHHHHHHHHHHHHHTTS-SEEEEEEE..-.HH..HHTT...BSTTB--HHHHGGGGG.................................
#=GC seq_cons                    .....................................................................h.p.hht-lhpuIt...aP.ssstFhl.spc..........psNGV.hPIKp.hhthLcpp.sWhhEp.lsh.....t.pt.psG.lDsh.K...h....t...s....h...hhulEaETGNISSSHRAlNKhsLGlhcG.l.uuhllhP..s.+p..hh.Y...LTDRlGNapELcPYF..................................
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