GenomeNet

Database: Pfam
Entry: BamHI
LinkDB: BamHI
Original site: BamHI 
#=GF ID   BamHI
#=GF AC   PF02923.14
#=GF DE   Restriction endonuclease BamHI
#=GF AU   Griffiths-Jones SR
#=GF SE   Structural domain
#=GF GA   22.80 22.80;
#=GF TC   22.90 29.50;
#=GF NC   21.20 21.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   BamHI
#=GF RN   [1]
#=GF RM   8145855
#=GF RT   Structure of restriction endonuclease BamHI and its relationship
#=GF RT   to EcoRI. 
#=GF RA   Newman M, Strzelecka T, Dorner LF, Schildkraut I, Aggarwal AK; 
#=GF RL   Nature 1994;368:660-664.
#=GF DR   INTERPRO; IPR004194;
#=GF DR   SCOP; 1bhm; fa;
#=GF SQ   22
#=GS K9PPX3_9CYAN/2-158      AC K9PPX3.1
#=GS A9B1V1_HERA2/1-20       AC A9B1V1.1
#=GS A8ZWD9_DESOH/1-96       AC A8ZWD9.1
#=GS M1PEY9_DESSD/2-159      AC M1PEY9.1
#=GS B8J492_DESDA/2-162      AC B8J492.1
#=GS E0UBP8_CYAP2/2-158      AC E0UBP8.1
#=GS A0A0C1N037_9CYAN/2-158  AC A0A0C1N037.1
#=GS A0A0S3PFP7_9NOSO/2-158  AC A0A0S3PFP7.1
#=GS K9WUX4_9NOST/16-172     AC K9WUX4.1
#=GS A0A0N7Z4W6_9CYAN/2-158  AC A0A0N7Z4W6.1
#=GS I4EF70_9CHLR/6-154      AC I4EF70.1
#=GS V4JFD4_9GAMM/5-166      AC V4JFD4.1
#=GS W4LFL9_9BACT/2-159      AC W4LFL9.1
#=GS G4KT14_OSCVS/16-166     AC G4KT14.1
#=GS L0AI53_NATGS/2-102      AC L0AI53.1
#=GS K9ZPM6_ANACC/2-158      AC K9ZPM6.1
#=GS L0AI53_NATGS/109-187    AC L0AI53.1
#=GS A0A0F4QNU8_9GAMM/2-159  AC A0A0F4QNU8.1
#=GS A9B1V0_HERA2/2-97       AC A9B1V0.1
#=GS K9XGD6_9CHRO/2-158      AC K9XGD6.1
#=GS Q2SJ83_HAHCH/13-166     AC Q2SJ83.1
#=GS A0A110AXA5_9CYAN/1-96   AC A0A110AXA5.1
K9PPX3_9CYAN/2-158                 ....................KIVQEVSLISVGSFEESRDWSIIRTEIRDAISLIVHPPGTSSFTINPKR.....HGNGV.KPIKEACMIALRDRfTWRLETPINY..-A.TK.SPGKVDAT.KVI.DN....YLFALEWETGNISSSHRAVNKMVLGLLRGVFLGTALVLPSRKIYPYLTDRIGNYEELEPYFD........................
A9B1V1_HERA2/1-20                  ....................-------------------------------------------------.....-----.--------------.----------..--.--.--------.---.--....------------------------------------------MYKYLTDRIGNYTEIEPYFD........................
A8ZWD9_DESOH/1-96                  ....................-------------------------------------------------.....-----.-------MKKLQSS.GWRLETPVDV..AT.VR.RPGPMDAT.IEV.NG....RLFCVEWETGNISSSHRAVNKMALGILKDILIGGVLILPTRKMYNYLTDRIGNFLELSPYFP........................
M1PEY9_DESSD/2-159                 ....................KILRTEVLISKGSFPKSDELETLLHDVYHAIKKVSWPPDSDIFTLNPVK.....KGNGV.KPIKTNCMIHLEEQ.GWILEHPMAL..GA.RI.KPGPVDAVlKLN.NG....KYFAVEWETGNISSSHRAVNKLAIGLLENVLEGGLLILPSRDMYQYLTDRIGNYAELAPYFP........................
B8J492_DESDA/2-162                 ...................n-IARNECLFSYGQFPNSAVWNNSFSMLINLIQGMEHPVGAGLFAIFPQSgkkhgEGNGV.KPIKEILMSRIPLD.-WQREGSLRV..PG.EA.NPGKIDIL.YSL.EG....HNIGIEWETGNVSSSHRAINKMLLGIDRGLLSVGILIVPVKNFAQYLTDRIGNFEELEPYFP........................
E0UBP8_CYAP2/2-158                 ....................KIVKEISLISVGNFEESRDWSIIRSEIRRAIALIVHPRGESSFIINPTR.....HGNGV.KPIKEACMIALRDQfGWRLETRVNY..-A.TK.SPGKVDAT.KVI.DD....YLFALEWETGNISSSHRAVNKLVLGLLRGVFLGAALVLPSRKLYAYLTDRIGNYEELEPYFD........................
A0A0C1N037_9CYAN/2-158             ....................KIVQEVSLMSRGSFEKSQQWVTIQNEIRSAIQLIVWPPGTSNFTINPTP.....HGNGV.KPIKNACMAFLKETfGWQLETKITY..-A.TK.SPGRVDAT.KAL.NG....HLFALEWETGNISSSHRAVNKLVLGLLRGVFLGSALVLPSRKLYPYLTDRVGNYEELEPYFD........................
A0A0S3PFP7_9NOSO/2-158             ....................KIVQEVSLINIGSFAESSDWSIIRAEIRNAISVIVHPPGTSSFTINPKK.....HGNGV.KPIKEACMLALKDKfDWRLETAINY..-A.TK.SPGKVDAT.KVI.DN....HLFALEWETGNISSSHRAVNKLVLGLLRGIFLGAALVLPSRKLYPYLTDRIGNYEELEPYFD........................
K9WUX4_9NOST/16-172                ....................KIVQEVSLISVGSFAESNDWSIIRTEIRDAISLIVHPPGTSSFTINPKK.....HGNGV.KPIKEACMIALRDKfGWKLETSVNY..-A.TK.SPGKVDAT.KVM.DN....YLFALEWETGNISSSHRAVNKMVLGLLRGVFLGTALVLPSRKIYPYLTDRIGNYEELEPYFD........................
A0A0N7Z4W6_9CYAN/2-158             ....................KIVQEVALVSVGNFEESNDWAIIRTEIRQAIALIVHPPGSEGFTINPAK.....HGNGV.KPIKEACMIALKDRfGWQLETSVQY..-A.TR.SPGKVDAT.KAL.DS....HLFALEWETGNISSSHRSMNKMVLGLLRGVFLGTVLVLPSRKLYPYLTDRIGNYEELEPYFD........................
I4EF70_9CHLR/6-154                 ...........tyllqmhep-------------IASSGEWKRIQADLAAAIASIAWPEGSDRFTINPVK.....MGNGV.VPIREAFQQGLNDL.GWAVEQQSV-..--.-P.NVGDVDAA.LDT.PI....GTFAMEWETGNISSSHRSLNRLSLGILSGSLVGGVLVLPSRKLYRYLTDRVGNVPELMPYFP........................
V4JFD4_9GAMM/5-166                 ........lleyhdilnpvl-------------FSRSPALQQAWVDVQQAVAATDWPHGTGSFSIYPESgkksrEGNGV.KLIKVPCIRALHAR.GWMTERLPDV..GS.SVlRTEDLDAL.KST.PD....GWIAFEGETGNISSSHRALNKLFLTMKETNTIGSFLVVPSNRLKLFLTDRIGNIGELEPYFS........................
W4LFL9_9BACT/2-159                 ....................KLIRKEILIDQGNFRSTLEYKGIEADISAAIARVVWPIGASTFTIYPER.....NANGV.VPIKKAFLAHLENQ.GWGLENRLDV..GAvQK.RPGAIDAT.KQI.GS....QYFAVEWETGNISSSHRALNKIAIGMLRGVLVGGTLILPTSSLYTYLTDRVGNFGELEPYFD........................
G4KT14_OSCVS/16-166                ..........mrtcpaavea-----------------------YHEVEQSIIENTTP-GKDIFILNDTS....kNCNGV.VPVKERCYQILEEDhLWYREKPLSYfhDD.AQ.KGGPIDVY.KEF.RTpsgfFRAGLEFETGNISSAHRSMNKLCVGILKGEIDLAMLMMPIKQMSYYLTDRVSNYEELEPYF-i.......................
L0AI53_NATGS/2-102                 ...................e-ISHTYTILDEGEFPNTAIWSEGREDVLDSVRDVYWPPRNDEFLVYPEE.....NENGV.NPITEQFEANLDKKsNWESTGRK--..--.--.--------.---.--....--------------------------------------------------------------wlsglleergildetlekmgeyyd
K9ZPM6_ANACC/2-158                 ....................KIVQEVSLISVGSFEESRDWSIIRSEIRDAISLIVHPPGTPNFTINPKR.....HGNGV.KPIKEACMIALRDRfRWRLETPINY..-S.TK.SPGRVDAT.KVI.DN....YLFALEWETGNISSSHRAVNKMVLGLLRGVFLGTALVLPSRKIYPYLTDRIGNYEELEPYFD........................
L0AI53_NATGS/109-187               .....sspwfdamkevemer-------------------------------------------------.....-----.--------------.----------..--.--.--------.---.EQ....GLIVAEWETGNISSSHRSLNRITLGLMSGIIHGGLIVLPNRDLYYYLTDRIGNYRELVPYF-v.......................
A0A0F4QNU8_9GAMM/2-159             ....................KITRTEVLINSGGFFDTQQFNDVLAEIEESISKVVWPLNSQYFSINPTK.....KGNGV.KPIKNGCMSHLEGL.GWQLEERLRI..TS.TM.RPGPLDAV.KTLpNG....SVLALEWETGNISSSHRALNKMVLGILEGALTGGILILPSRAMYKYLTDRIGNFQEIEPYFP........................
A9B1V0_HERA2/2-97                  ....................KIIHEERLIDAGNFSLTTDWNTIYADIIEAIATIRWPTNGAVFSLNPID.....KGNGV.KPIKTACMDHLAKK.GWLLEHSIDI..AT.AK.KPGPMDAS.YK-.--....--------------------------------------------------------------tpns....................
K9XGD6_9CHRO/2-158                 ....................KIVQEISLISVGGFEESGDWSIVRAEIREAISLIVHPPGASNFTINPTK.....HGNGV.KPIKEAGMIALKDRfGWRLETSINY..-A.TR.SPGKVDAT.KVL.DS....YLFALEWETGNISSSHRAINKMVLGLLRGVFLGAVLVLPSRKLYPYLTDRIGNYEELEPYFD........................
Q2SJ83_HAHCH/13-166                ....................RITNHEILVKTGTVPN---LYSIIKEVEAVIKMVVWPLKNDNFAINPTR.....KGNGV.KPIKNECMEHLKLN.GWHLEKRLTI..KA.DM.KPGPLDAV.KMI.GG....KAFALEWETENISSSHRAINKMVLGMLERVIIGGILILPSRAMYNYLTDRVGNFQELKPYFS........................
A0A110AXA5_9CYAN/1-96              ....................-------------------------------------------------.....-----.-------MIALRDRfGWNLETSINY..-A.TR.SPGKVDAT.KAL.DN....HLFALEWETGNISSSHRAVNKMVLGLLRNVFLGAVLVLPSRKLYPYLTDRIGNYEELEPYFD........................
#=GC seq_cons                      .....................Ihpp..Lhs.GtF.pottap.lhs-ltpuIthlsaP.sss.FsINPpc.....cGNGV.KPIKpssMhtLccp.GWpLEptlsh...u.st.pPG.lDAs.K.h.ss....hhFAlEWETGNISSSHRAlNKhsLGlLcGlhlGuhLlLPSRchY.YLTDRIGNapELEPYFs........................
//
DBGET integrated database retrieval system