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Database: Pfam
Entry: BamHI
LinkDB: BamHI
Original site: BamHI 
#=GF ID   BamHI
#=GF AC   PF02923.10
#=GF DE   Restriction endonuclease BamHI
#=GF AU   Griffiths-Jones SR
#=GF SE   Structural domain
#=GF GA   22.80 22.80;
#=GF TC   27.00 27.00;
#=GF NC   22.70 22.20;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   BamHI
#=GF RN   [1]
#=GF RM   8145855
#=GF RT   Structure of restriction endonuclease BamHI and its relationship
#=GF RT   to EcoRI. 
#=GF RA   Newman M, Strzelecka T, Dorner LF, Schildkraut I, Aggarwal AK; 
#=GF RL   Nature 1994;368:660-664.
#=GF DR   INTERPRO; IPR004194;
#=GF DR   SCOP; 1bhm; fa;
#=GF SQ   18
#=GS A8ZWD9_DESOH/1-97     AC A8ZWD9.1
#=GS G4G637_9EURY/89-188   AC G4G637.1
#=GS G4G637_9EURY/1-101    AC G4G637.1
#=GS T2BA_BACAM/1-168      AC P23940.1
#=GS T2BA_BACAM/1-168      DR PDB; 1ESG A; 1-168;
#=GS T2BA_BACAM/1-168      DR PDB; 3BAM B; 1-168;
#=GS T2BA_BACAM/1-168      DR PDB; 1ESG B; 1-168;
#=GS T2BA_BACAM/1-168      DR PDB; 1BHM B; 1-168;
#=GS T2BA_BACAM/1-168      DR PDB; 2BAM A; 1-168;
#=GS T2BA_BACAM/1-168      DR PDB; 1BHM A; 1-168;
#=GS T2BA_BACAM/1-168      DR PDB; 1BAM A; 1-168;
#=GS T2BA_BACAM/1-168      DR PDB; 2BAM B; 1-168;
#=GS T2BA_BACAM/1-168      DR PDB; 3BAM A; 1-168;
#=GS E2JKI3_9GAMM/1-156    AC E2JKI3.1
#=GS Q9RM91_BACSP/1-158    AC Q9RM91.1
#=GS B8J492_DESDA/1-163    AC B8J492.1
#=GS G4KT14_OSCVS/1-167    AC G4KT14.1
#=GS A9B1V1_HERA2/1-21     AC A9B1V1.1
#=GS F5UFH9_9CYAN/1-159    AC F5UFH9.1
#=GS C7BP10_PHOAA/154-236  AC C7BP10.1
#=GS F4EMF2_BACAM/1-168    AC F4EMF2.1
#=GS Q2SJ83_HAHCH/12-167   AC Q2SJ83.1
#=GS G0IPC3_BACAM/1-168    AC G0IPC3.1
#=GS E0UBP8_CYAP2/1-159    AC E0UBP8.1
#=GS E1UQE5_BACAS/1-168    AC E1UQE5.1
#=GS A9B1V0_HERA2/1-96     AC A9B1V0.1
#=GS F4EBG5_BACAM/1-168    AC F4EBG5.1
A8ZWD9_DESOH/1-97                ........................--------------..-..---...----------------------------..----...----------MKKLQ.SSGWRLETPVDV-ATVRRP.GPMDATIEV....NGRLFCVEWETGNISSSHRAVNKMALGILKDILIGGVLILPTRKMYN..Y...LTDRIGNFLELSPYFP-l........................
#=GR A8ZWD9_DESOH/1-97     pAS   .............................................................................................................................*................*.*.....................................................................................
G4G637_9EURY/89-188              ildetlekmgeyyddpldflsspw--------------..-..---...----------------------------..----...---------------.-------------------.--FDAMKEVemerEQGLIVAEWETGNISSSHRSLNRITLGLMSGIIHGGLIVLPNRDLYY..Y...LTDRIGNYRELVPYF--vi.......................
#=GR G4G637_9EURY/89-188   pAS   .............................................................................................................................*................*.*.....................................................................................
G4G637_9EURY/1-101               ........................MEISHTYTILDEGE..F..PNTa.iWSEGREDVLDSVRDVYWPPRNDEFLVYP..EENE...NGVNPITEQFEANLDkKSNWESTG-----------.---------....-----------------------------------------------..-...-----------------rkwlsglleergildetlekmgeyy
T2BA_BACAM/1-168                 ........................MEVEKEFITDEAKE..L..LSKdklIQQAYNEVKTSICSPIWPATSKTFTINN..TEKN..cNGVVPIKELCYTLLEdTYNWYREKPLDILKLEKKKgGPIDVYKEFiensELKRVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMPIKQLAY..Y...LTDRVTNFEELEPYFEL.........................
#=GR T2BA_BACAM/1-168      SS    ........................-EEEEEEE-HHHHH..H..HHH-HHHHHHHHHHHHHHH---BSTTSSSBEEE-..SSTT..-B-SHHHHHHHHHHHHHTT--EEEEHHHHHHTTSTTSS-EEEEEEEEETTEEEEEEEEE--SBHHHHHHHHHHHHHHHHTTS-SEEEEEEE-HHHHT..T...BSTTB--HHHHGGGGGG.........................
#=GR T2BA_BACAM/1-168      AS    .............................................................................................................................*................*.*.....................................................................................
E2JKI3_9GAMM/1-156               ........................MKIKRIEVLINNGS..V..PG-...IPMILNEIQDAIKTVSWPEGNNSFVINP..VRKG...NGVKPIKNSCMRHLH.QKGWALEHPVRI-KAEMRP.GPLDAVKMI....GGKAFALEWETGNISSSHRAINKMVMGMLERVIIGGVLILPSRDMYN..Y...LTDRVGNFRELEPYFSV.........................
#=GR E2JKI3_9GAMM/1-156    pAS   .............................................................................................................................*................*.*.....................................................................................
Q9RM91_BACSP/1-158               ........................MKVKNVEVLIDKGR..N..TQE...IESIKAHVLNSIENMQYPANSGAFHLYG..GKKA...NGVKPIKDSYMMHQQ.EHGWILEYKLDVGVTNSRP.GPIDAVLPV....SDKYFAVEWETGNIASSHRAINKMIVGMLNGKLIGGILILPSREMYD..Y...LTDRVGNFRELSPYFDV.........................
#=GR Q9RM91_BACSP/1-158    pAS   .............................................................................................................................*................*.*.....................................................................................
B8J492_DESDA/1-163               ......................mn--IARNECLFSYGQ..F..PNSa.vWNNSFSMLINLIQGMEHPVGAGLFAIFPqsGKKHgegNGVKPIKEILMSRIP.-LDWQREGSLRV-PGEANP.GKIDILYSL....EGHNIGIEWETGNVSSSHRAINKMLLGIDRGLLSVGILIVPVKNFAQ..Y...LTDRIGNFEELEPYFP-v........................
#=GR B8J492_DESDA/1-163    pAS   .............................................................................................................................*................*.*.....................................................................................
G4KT14_OSCVS/1-167               ...mkiakfyispvadnlmrtcpa--------------..-..---...AVEAYHEVEQSIIENTTPGK-DIFILND..TSKN..cNGVVPVKERCYQILEeDHLWYREKPLSYFHDDAQKgGPIDVYKEFrtpsGFFRAGLEFETGNISSAHRSMNKLCVGILKGEIDLAMLMMPIKQMSY..Y...LTDRVSNYEELEPYF--il.......................
#=GR G4KT14_OSCVS/1-167    pAS   .............................................................................................................................*................*.*.....................................................................................
A9B1V1_HERA2/1-21                ........................--------------..-..---...----------------------------..----...---------------.-------------------.---------....--------------------------------------------MYK..Y...LTDRIGNYTEIEPYFDL.........................
F5UFH9_9CYAN/1-159               ......................mk--IVQEVSLISRGS..FeeSEE...WGVIKNEIRIAIDAIAWPVGASNFTINP..TRHG...NGVKPIKNACMAALHdNFGWQLETKIRF--ATRAP.GRVDATKIL....DNHLFAFEWETGNISSSHRAVNKLVLGILRGIFLGTALVLPSRQLYP..Y...LTDRIGNYEELEPYFDV.........................
#=GR F5UFH9_9CYAN/1-159    pAS   .............................................................................................................................*................*.*.....................................................................................
C7BP10_PHOAA/154-236             ........enikdffeekyvsyry--------------..-..---...----------------------------..----...---------------.-------------------.---------....---KIGVEFETGNVASSFRAINKLNGLFHQGQIDGGCFITSIDKKSSatRiwpVSNRNGSFQELK-----nrsyl....................
F4EMF2_BACAM/1-168               ........................MEVEKEFITDEAKE..L..LSKdklIQQAYNEVKTSICSPIWPATSKTFTINN..TEKN..cNGVVPIKELCYTLLEdTYNWYREKPLDILKLEKKKgGPIDVYKEFiensELKRVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMPIKQLAY..Y...LTDRVTNFEELEPYFEL.........................
#=GR F4EMF2_BACAM/1-168    pAS   .............................................................................................................................*................*.*.....................................................................................
Q2SJ83_HAHCH/12-167              ........................IRITNHEILVKTGT..V..PN-...LYSIIKEVEAVIKMVVWPLKNDNFAINP..TRKG...NGVKPIKNECMEHLK.LNGWHLEKRLTI-KADMKP.GPLDAVKMI....GGKAFALEWETENISSSHRAINKMVLGMLERVIIGGILILPSRAMYN..Y...LTDRVGNFQELKPYFS-a........................
#=GR Q2SJ83_HAHCH/12-167   pAS   .............................................................................................................................*................*.*.....................................................................................
G0IPC3_BACAM/1-168               ........................MEVEKEFITDEAKE..L..LSKdklIQQAYNEVKTSICSPIWPATSKTFTINN..TEKN..cNGVVPIKELCYTLLEdTYNWYREKPLDILKLEKKKgGPIDVYKEFiensELKRVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMPIKQLAY..Y...LTDRVTNFEELEPYFEL.........................
#=GR G0IPC3_BACAM/1-168    pAS   .............................................................................................................................*................*.*.....................................................................................
E0UBP8_CYAP2/1-159               ........................MKIVKEISLISVGN..F..EESr.dWSIIRSEIRRAIALIVHPRGESSFIINP..TRHG...NGVKPIKEACMIALRdQFGWRLETRVNY--ATKSP.GKVDATKVI....DDYLFALEWETGNISSSHRAVNKLVLGLLRGVFLGAALVLPSRKLYA..Y...LTDRIGNYEELEPYFDI.........................
#=GR E0UBP8_CYAP2/1-159    pAS   .............................................................................................................................*................*.*.....................................................................................
E1UQE5_BACAS/1-168               ........................MEVEKEFITDEAKE..L..LSKdklIQQAYNEVKTSICSPIWPATSKTFTINN..TEKN..cNGVVPIKELCYTLLEdTYNWYREKPLDILKLEKKKgGPIDVYKEFiensELKRVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMPIKQLAY..Y...LTDRVTNFEELEPYFEL.........................
#=GR E1UQE5_BACAS/1-168    pAS   .............................................................................................................................*................*.*.....................................................................................
A9B1V0_HERA2/1-96                ........................MKIIHEERLIDAGNfsL..TTD...WNTIYADIIEAIATIRWPTNGAVFSLNP..IDKG...NGVKPIKTACMDHLA.KKGWLLEHSIDI-ATAKKP.GPMDAS---....-----------------------------------------------..-...-----------------yktpn....................
F4EBG5_BACAM/1-168               ........................MEVEKEFITDEAKE..L..LSKdklIQQAYNEVKTSICSPIWPATSKTFTINN..TEKN..cNGVVPIKELCYTLLEdTYNWYREKPLDILKLEKKKgGPIDVYKEFiensELKRVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMPIKQLAY..Y...LTDRVTNFEELEPYFEL.........................
#=GR F4EBG5_BACAM/1-168    pAS   .............................................................................................................................*................*.*.....................................................................................
#=GC SS_cons                     ........................-EEEEEEE-HHHHH..H..HHH-HHHHHHHHHHHHHHH---BSTTSSSBEEE-..SSTT..-B-SHHHHHHHHHHHHHTT--EEEEHHHHHHTTSTTSS-EEEEEEEEETTEEEEEEEEE--SBHHHHHHHHHHHHHHHHTTS-SEEEEEEE-HHHHT..T...BSTTB--HHHHGGGGGG.........................
#=GC seq_cons                    ........................hcl.pp.hh.pttp..h...pp...htphhs-lhpuIps.haPssspsFhlNs..scKs...NGVhPIKp.ChphLc.phsWhhEp.lcl.hhptp..GPlDshK.h....p.+hhuhEaETGNISSuHRuhNKhlLGlhcG.l.hulllhP.+phh...Y...LTDRluNFcELEPYFp..........................
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