GenomeNet

Database: Pfam
Entry: Borrelia_orfD
LinkDB: Borrelia_orfD
Original site: Borrelia_orfD 
#=GF ID   Borrelia_orfD
#=GF AC   PF02999.12
#=GF DE   Borrelia orf-D family
#=GF PI   Mlp; Orf-D; 
#=GF AU   Bateman A
#=GF SE   Pfam-B_1511 (release 6.4)
#=GF GA   21.70 21.70;
#=GF TC   138.40 138.20;
#=GF NC   19.30 16.80;
#=GF BM   hmmbuild --amino HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   8655511
#=GF RT   Borrelia burgdorferi supercoiled plasmids encode multicopy
#=GF RT   tandem open reading frames and a lipoprotein gene family. 
#=GF RA   Porcella SF, Popova TG, Akins DR, Li M, Radolf JD, Norgard MV; 
#=GF RL   J Bacteriol 1996;178:3293-3307.
#=GF DR   INTERPRO; IPR004248;
#=GF CC   Borrelia burgdorferi supercoiled plasmids encode multicopy
#=GF CC   tandem open reading frames called Orf-A, Orf-B, Orf-C and Orf-D.
#=GF CC   This family corresponds to Orf-D. The putative product of this
#=GF CC   gene has no known function.
#=GF SQ   8
#=GS H7C7M8_BORBU/21-114  AC H7C7M8.1
#=GS H7C7R0_BORBU/21-114  AC H7C7R0.1
#=GS H7C7L3_BORBU/21-114  AC H7C7L3.1
#=GS O50748_BORBU/28-127  AC O50748.1
#=GS H7C7K4_BORBU/21-114  AC H7C7K4.1
#=GS H7C7N7_BORBU/21-114  AC H7C7N7.1
#=GS Q9S0F0_BORBU/21-114  AC Q9S0F0.2
#=GS Q9R397_BORBU/21-114  AC Q9R397.2
H7C7M8_BORBU/21-114             NLPEEPKPPIIPTLKSLAKYETQLSEYVMYLVTFLAKTKVKV----NDPNYPEYPYPDLSTLKDEHSITA--VRHNINIYLEYIKKTKPIAEKVYNKYSQ
H7C7R0_BORBU/21-114             NLPEEPKPPIIQTLKSLAKYETQLSEYVMYLVTFLAKTKVKV----NDPNYPEYPYPDLSTLKDEHSITA--VKHNINIYLEYIKKTKPIAEKVYNKYSQ
H7C7L3_BORBU/21-114             NLPEEPKPPIIPTLKSLAKYETQLSEYVMYLVTFLAKTKVKV----NDPNYPEYPYPDLSTLKDEHSIPA--VKHNIKIYLEYIKKAKPIAEKVYHQYSK
O50748_BORBU/28-127             SLPQKPTLTNKEDIENLMLDEAELFRYSTALNVWLLTVKSYVIKYYPNDKFPVFENFDPVFGDENGTKETNILKNRITYYNRYIEKTEPIVFGCYKKYSR
H7C7K4_BORBU/21-114             NLPEEPKPPIIQTLKSLAKYETQLSEYVMYLVTFLAKTKVKV----NDPNYPEYPYPDLSTLKDEHSITA--VKHNINIYLEYIKKTKPIAEKVYNKYSQ
H7C7N7_BORBU/21-114             NLPEEPNPPIIPTLKSLAKYETQLSEYVIYLVTFLAKTKVKV----NDPNYPEYPYPDLSALKDEHSITA--VRHNINIYLEYIKKTKPIAEKVYNKYSQ
Q9S0F0_BORBU/21-114             NLPEEPKPPIIPTLKSLAKYETQLSEHVMYLVTFLAKTKVKV----NDPNYPEYPYPDLSTLKDEHSITA--VKHNINIYLEYIKKTKPIAEKVYNKYSQ
Q9R397_BORBU/21-114             NLPEEPKPPIIPTLKSLAKYETQLSEYVMYLVTFLAKTKVKV----NDPNYPEYPYPDLSTLKDEHSITA--VKHNINIYLEYIKKTKPIAEKVYNKYSQ
#=GC seq_cons                   NLPEEPKPPIIPTLKSLAKYETQLSEYVMYLVTFLAKTKVKV....NDPNYPEYPYPDLSTLKDEHSITA..VKHNINIYLEYIKKTKPIAEKVYNKYSQ
//
DBGET integrated database retrieval system