GenomeNet

Database: Pfam
Entry: BpuJI_N
LinkDB: BpuJI_N
Original site: BpuJI_N 
#=GF ID   BpuJI_N
#=GF AC   PF11564.4
#=GF DE   Restriction endonuclease BpuJI - N terminal
#=GF AU   Pollington J
#=GF SE   pdb_2vla
#=GF GA   25.00 25.00;
#=GF TC   112.60 112.60;
#=GF NC   24.50 24.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   BpuJI
#=GF RN   [1]
#=GF RM   18433771
#=GF RT   The recognition domain of the BpuJI restriction endonuclease in
#=GF RT   complex with cognate DNA at 1.3-A resolution. 
#=GF RA   Sukackaite R, Grazulis S, Bochtler M, Siksnys V; 
#=GF RL   J Mol Biol. 2008;378:1084-1093.
#=GF DR   INTERPRO; IPR021108;
#=GF CC   BpuJI is a restriction endonuclease which recognises the
#=GF CC   asymmetric sequence 5'-CCCGT and cuts at multiple sites in the
#=GF CC   surrounding area of the target sequence. This family of proteins
#=GF CC   is the N terminal domain of BpuJI which has DNA recognition
#=GF CC   functions. The recognition domain has two subdomains D1 and D2.
#=GF CC   The recognition of the target sequence occurs through major
#=GF CC   groove contacts of amino acids on the helix-turn-helix region
#=GF CC   and the N-terminal arm [1].
#=GF SQ   34
#=GS D3H8J5_STRM6/1-281  AC D3H8J5.1
#=GS R1J329_ENTFC/1-281  AC R1J329.1
#=GS K8W9T6_9ENTR/1-277  AC K8W9T6.1
#=GS L2QJ05_ENTFC/1-281  AC L2QJ05.1
#=GS S2V939_STREE/1-281  AC S2V939.1
#=GS V8IKM9_STREE/1-281  AC V8IKM9.1
#=GS W4RSZ5_9BACI/3-287  AC W4RSZ5.1
#=GS D2BR72_LACLK/3-281  AC D2BR72.1
#=GS V8CGA3_9BACT/8-310  AC V8CGA3.1
#=GS J1PVL6_STREE/1-281  AC J1PVL6.1
#=GS E4TPW2_MARTH/6-303  AC E4TPW2.1
#=GS E5UMM8_NEIMU/1-291  AC E5UMM8.1
#=GS E3PUV9_CLOSD/1-282  AC E3PUV9.1
#=GS U2J7M3_9BACT/8-310  AC U2J7M3.1
#=GS F9HC56_STRMT/1-171  AC F9HC56.1
#=GS F0F9L7_9BACT/1-295  AC F0F9L7.1
#=GS E9S8F5_RUMAL/1-141  AC E9S8F5.1
#=GS S3LGX8_STREE/1-281  AC S3LGX8.1
#=GS R9JXU0_9FIRM/3-284  AC R9JXU0.1
#=GS W8T4M6_EUBAC/1-208  AC W8T4M6.1
#=GS A3FMN7_BACPU/1-285  AC A3FMN7.1
#=GS A3FMN7_BACPU/1-285  DR PDB; 2VLA A; 1-280;
#=GS J1N6G1_STREE/1-281  AC J1N6G1.1
#=GS V8JS55_STREE/1-281  AC V8JS55.1
#=GS G6RL09_STREE/1-281  AC G6RL09.1
#=GS V6T7S0_9BACI/3-287  AC V6T7S0.1
#=GS A5LKH4_STREE/1-281  AC A5LKH4.1
#=GS R7J3F2_9BACT/4-309  AC R7J3F2.1
#=GS F5S6P5_9NEIS/4-306  AC F5S6P5.1
#=GS F9HC57_STRMT/1-119  AC F9HC57.1
#=GS F2BHI1_STRSA/1-281  AC F2BHI1.1
#=GS R5SQ65_9CLOT/1-286  AC R5SQ65.1
#=GS V8KIU3_STREE/1-281  AC V8KIU3.1
#=GS T1CPP8_9PORP/1-274  AC T1CPP8.1
#=GS R6CY61_9BACE/7-309  AC R6CY61.1
D3H8J5_STRM6/1-281             ..MYQVPEKyYFRLHHPRPRFKNDVENVLVYMATNISYLGILPKKEFSQQLNDIIKQYA....G.N....aDKT.EKTINNWRTEIS-SLFGMMI......EKE..G..FVY.SGNRAKELTEDQDLIRFFKTFLYNFEYPGGHLKDNEIVKLCQIGVQFK.....PAQYLLELFTe.....asQA.EE...K...TIYLTDEEVAHCIFNDLRCTRDREPVL.EIWNRIKENRASKVAY.............DTK-............-............GDVIRYA----KDILDYMVIASLL.TV.QG.G..R....YKINSMEEQAIN---DFLQSDAT.FDGYAQFIgn.asTTIE.DVRN...F...RSAWFEY---VNRDLG........
R1J329_ENTFC/1-281             ..MYVVPREyFYRLHHVRPRFKNQVENVLIFMATNVSDLGKMNKLDFKEKLNEMIICYP....G.N....nDKE.LKTINNWRTEIS-SLFGLFI......EEG..D..FTE.AGLRAKELTEEQDLVKFFKTFLFNFEYPGGHLKNQEIVKQCREGIKFQ.....PVKYILKLYKv.....asDY.ER...K...DIYLTVPEVTHCIFNDLRCTRDNQDPL.ETWFRIKNNREQNIEY.............DSR-............-............GDITRYA----GDILDYMDIANLI.KA.RG.K..K....FYINHIEDETIS---VFINTDSS.FLGYSEFIgn.ssTIID.DIRN...I...RVSWFRY---VNRDM-k.......
K8W9T6_9ENTR/1-277             ..MYKIPTKfYQRLHHPRPRFKSNIENVLGYMSFSIAELDGETESVFKEKILSAINDFP....G.N....eGVT.LKTLNNWRTEIT-ALFSMVN......TKN..N..CNF.ATDLSKELANTTNLKEFFLRFISTFQYPGGFLKNNEIEKIIISDIHFH.....PLLWLACFYNs......sAI.SE...E...DLYITDVEFCHCVLNDLRVTRDHEDIS.ATIGRILYNRKNEVNY.............DTA-............-............GDIKRYA----LDILDYCVLAGLM.LK.D-.Y..K....GKFFFRD-DAKEFLSYFKDHAPI.FKYYQKSH.....-TLK.QLES...L...KSEWIHF---VN----dsskl...
L2QJ05_ENTFC/1-281             ..MYVVPREyFYRLHHVRPRFKNQVENVLIFMATNVSDLGKMNKLDFKEKLNEMIICYP....G.N....nDKE.LKTINNWRTEIS-SLFGLFI......EEG..D..FTE.AGLRAKELTEEQDLVKFFKTFLFNFEYPGGHLKNQEIVKQCREGIKFQ.....PVKYILKLYKv.....asDY.ER...K...DIYLTVPEVTHCIFNDLRCTRDNQDPL.ETWFRIKNNREQNIEY.............DSR-............-............GDITRYA----GDILDYMDIANLI.KA.RG.K..K....FYINHIEDETIS---VFINTDSS.FLGYSEFIgn.ssTIID.DIRN...I...RVSWFRY---VNRDM-k.......
S2V939_STREE/1-281             ..MYQVPEKyYFRLHHPRPRFKNDVENVLVYMATNISYLGILPKKEFSQQLNDIIKQYA....G.N....aDKT.EKTINNWRTEIS-SLFGMMI......EKE..G..FVY.SGNRAKELTEDQDLIRFFKTFLYNFEYPGGHLKDNEIVKLCQIGVQFK.....PAQYLLELFTe.....asQA.EE...K...TIYLTDEEVAHCIFNDLRCTRDREPVL.EIWNRIKENRASKVAY.............DTK-............-............GDVIRYA----KDVLDYMVIASLL.TV.QG.G..R....YKINSMEEQATN---DFLQSDAT.FDGYAQFIgn.asTTIE.DVRN...F...RSAWFEY---VNRDLG........
V8IKM9_STREE/1-281             ..MYQVPEKyYFRLHHPRPRFKNDVENVLVYMATNISYLGILPKKEFSQQLNDIIKQYA....G.N....aDKT.EKTINNWRTEIS-SLFGMMI......EKE..G..FVY.SGNRAKELTEDQDLIRFFKTFLYNFEYPGGHLKDNEIVKLCQIGVQFK.....PAQYLLELFTe.....asQA.EE...K...TIYLTDEEVAHCIFNDLRCTRDREPVL.EIWNRIKENRASKVAY.............DTK-............-............GDVIRYA----KDVLDYMVIASLL.TV.QG.G..R....YKINSMEEQAIN---DFLQSDAT.FDGYAQFIgn.asTTIE.DVRN...F...RSAWFEY---VNRDLG........
W4RSZ5_9BACI/3-287             .l-YNVPSKhYFRLHHPRPRFKNDIENVLIYFASEIAAIGRKRIRDFVLDFDFAIKKYP....G.N....lTKT.QKTINNWRTEID-ALFSFIE......REG..D..YLK.PSKRAIELATNQDLVKFFKLFCYHFQYPGGFLKPHVNLEYLRNGINFR.....PCSYILELLT........EA.EA...QegvRVGISKSEATHCIFNDLRVTRDGRTPK.ATWRLIRKNRQMDLEY.............DWR-............-............GDVIRYA----GDILDYMVQANLL.VS.RP.N.hK....YYINQTESIAIR---RFLNPTNDlFDYYNE-IadvatLTLS.EVKE...L...DAEWVSYFN-------tprdeg..
D2BR72_LACLK/3-281             .t-YQTPKEyYRRIHHVRPRFKNKVEEVLIFMATRLSSLGTLDSNKFAESMNKAIREFP....D.N....hDLT.LKTIQNWRTEIS-ALFGFVL......TEN..G..VSR.AGRTAVELADNQDLVKFFKEFLFSFQYPGAHTKDKEILELCQDDIRFQ.....PAYFLINLMK........NCpIQ...R...EAYITKDEATHLIFNDLRVTAKKETIS.ETWKRVIDSRKSNMNF.............DSS-............-............GDVTRYA----GDILDYMELANFI.NL.KG.R..N....FYLNKNEKDSIN---KFMENATF.FSEYSDLKrk.nkLTLE.SIKE...I...RVKWFSF---VNRDLG........
V8CGA3_9BACT/8-310             .y-YNLPDKyWHRIHFVRPRFKSNIENVLLYMAGECCRIPDCSCEDYNKKYLNAIRMFP....G.N....iDMA.EKTLHNWRTEIP-ALFGFYV......EDK..EadITR.TSKMATFLYENQDLTQFFRLFLMSFQFPGGHMKPQDLKDIIYLNIRFK.....PAKTIIQVLLagn..ellSS.ENs.vK...EMSLSAEEATYCIFNDVRVTSGQISPK.QVAKTILDNRKNQIKYynpadphtksltgASRT............K............GDMTRYA----GDILDYMELADLL.TK.NG.S..Y....FYLKGNELQAIQ---AFAKDKTW.FKGYESFY.....GQNDlDTASlsaV...EANWFAY---VN----dsmk....
J1PVL6_STREE/1-281             ..MYQVPEKyYFRLHHPRPRFKNDVENVLVYMATNISYLGILPKKEFSQQLNDIIKQYA....G.N....aDKT.EKTINNWRTEIS-SLFGMMI......EKE..G..FVY.SGNRAKELTEDQDLIRFFKTFLYNFEYPGGHLKDNEIVKLCQIGVQFK.....PAQYLLELFTe.....asQA.EE...K...TIYLTNEEVAHCIFNDLRCTRDREPVL.EIWNRIKENRASKVAY.............DTK-............-............GDVIRYA----KDILDYMVIASLL.TV.QG.G..R....YKINSMEEQAIN---DFLQSDAT.FDGYAQFIgn.asTTIE.DVRN...F...RSAWFEY---VNRDLG........
E4TPW2_MARTH/6-303             .k-YKIPDDyFFRLHHVRPRFKNDVEEVLLYVATSISEMPILDKEVFRDELNKVLFSFK....K.N....aTST.QKTVDNWRTEIS-ALFGFIQ......ESN..G..KQY.PGVTAKRLANNQYLDEFFNYFLFSFQYPGGHIKSQNVIKQIEAGVRFK.....PCQFILRLLI........EG.EKilgK...PFSFTAEELTQCAYFDLRVTRDGRHPK.EVAELILSNRFRNLEY.............EHRYeqlkn.hrtgsyPs..........rGDVYRYA----GDILDYMVLANLL.HH.KG.TgyY....YYLNDQNKDAIN---FHLKNSVW.FKEYDEFYki.dsITNP.EIGT...L...EELWFDF---VN----sfde....
E5UMM8_NEIMU/1-291             .m--FNPDI.QYRCDIIRGKAQKELDDLLPTYSTIVADICPADENIFNQQFNNRLSQSFy..qK.NynelgKNQ.QKTIRNHITEIAGKLFGLYF......KKN..G..LVY.ESPSNSKLVNDQDQPAFFKNLCLNFQFPNGTQKIQTIAERINKQIKFK.....PFHFILALLA........EA.EQ...V...KFTITTYHIGYYVLNALEVLQGKVTPK.EVLDTIISNSQKNSLK.............RVP-............-............--VTSHDFQHIRELLNLLVLANLI.VI.DE.N..RsskaIQLNHYENQLIKLFIKEYNTPLQ.FDIYQFDL.....NAEH.IGKR...I...EMEWAEYFAQI-----alqna...
E3PUV9_CLOSD/1-282             ..MYLVPNEyYVRLHHVRPRFKGDIENVLLYVAEEISKIPELPCNEFADELNNAIKCYP....G.N....vNRK.IKTINNWRTEIS-ALFG-FI......ESD..G..VTSrAGRRAIELSEKQDLVESFKMFLFSFQYPGAHIKSHEILKLIQQGVHFK.....PAQYILKVIQs.....geKI.MG...K...KNYITKAEACHCIFNDLRCVRDNENTD.LTWKRIEKNREDEIEY.............DMT-............-............GDIIRYA----GDIIDYMEIANLLvSY.DG.K..Q....YYLNSLENEAIL---KFVKSTEW.FNDYDQFIsn.ktASLQ.EINN...C...KKNWFAF---VNRG--mg......
U2J7M3_9BACT/8-310             .y-YNLPDKyWHRIHFVRPRFKSNIENVLLYMAGECCRIPDCSCEDYNKKYLNAIRMFP....G.N....iDMA.EKTLHNWRTEIP-ALFGFYV......EDK..EadITR.TSKMATFLYENQDLTQFFRLFLMSFQFPGGHMKPQDLKDIIYLNIRFK.....PAKTIIQVLLagn..ellSS.ENs.vK...EMSLSAEEATYCIFNDVRVTSGQISPK.QVAKTILDNRKNQIKYynpadphtksltgASRT............K............GDMTRYA----GDILDYMELADLL.TK.NG.S..Y....FYLKGNELQAIQ---AFAKDKTW.FKGYESFY.....GQNDlDTAS...LsavEPNWFAY---VN----dsmk....
F9HC56_STRMT/1-171             ..-------.-------------------------------------------------....-.-.....---.--------------------......---..-..---.---------------------MYNFEYPGGHLKDNEIVKLCQIGVQFK.....PAQYLLELFTe.....asQA.EE...K...TIYLTDEEVAHCIFNDLRCTRDREPVL.EIWNRIKENRASKVAY.............DTK-............-............GDVIRYA----KDILDYMVIASLL.TV.QG.G..R....YKINSMEEQAIN---DFLQSDAT.FDGYAQFIgn.asTTIE.DVRN...F...RSAWFEY---VNRDLG........
F0F9L7_9BACT/1-295             .m--YDPTL.QYRCTIIRGKSQTDMEDLLPLYANIVHKYCPCEEKQFRASCCKALSKALfsteAyDr..lsDSN.QKTVLNHLTEIAGTLLGLYYpayddeTKT..N..YIN.ESDSCKYLIESGDYPTFFKNLCLNFQFPNGAKWLQFIEDDIKNKIRIK.....PFCYVVSLLF........HA.QQ...Qv.eRELLTKQEIGFYVLNSLEVLQGKVPCS.DVYDRIMADRKNKVRR.............ERL-............S............---GSHDWQHIKEQFNLLELADII.ET.DA.T..Y....IWLNKNAAESIACFIK-HKDDFI.FDAYKYDL.....KSKA.GRIQ...Y...MEDWKKAYGMFNREL-q.......
E9S8F5_RUMAL/1-141             ml-------.-------------------------------------------------....-.-.....---.--------------------......---..-..---.------------------------------------------------.....----------........-A.KY...A...NITLTKSDIGYYVLNNLDVLQRKATPA.EVIEQIDKDRKNRIER.............KVHT............D............GKASSYDVQHINEQINYLELANLV.II.DD.K..D....VSINPNEMETVQMFADEYNSDPM.FDCSAYNF.....DTVE.GRKL...F...SQKWNEYFSTL-----snvsdk..
S3LGX8_STREE/1-281             ..MYQVPEKyYFRLHHPRPRFKNDVENVLVYMATNISYLGILPKKEFSQQLNDIIKQYA....G.N....aDKT.EKTINNWRTEIS-SLFGMMI......EKE..G..FVY.SGNRAKELTEDQDLIRFFKTFLYNFEYPGGHLKDNEIVKLCQIGVQFK.....PAQYLLELFTe.....asQA.EE...K...TIYLTDEEVAHCIFNDLRCTRDREPVL.EIWNRIKENRASKVAY.............DTK-............-............GDVIRYA----KDVLDYMVIASLL.TV.QG.G..R....YKINSMEEQAIN---DFLQSDAT.FDGYAQFIgn.asTTIE.DVRN...F...RSAWFEY---VNRDLG........
R9JXU0_9FIRM/3-284             .e-YQIPEQyYFRLHHVRPRFKGDIENVLIYVAEEITRVGERATDEFVEAVNSALFRYP....G.N....aNRK.LKTINNWRTEIS-ALFGFIE......HTD..T..TDK.PGWRAVELAENQDLVEGFKVFLYNFQYPGAHIKPKEVLEQIKQGVHFK.....PAQYILKMLRy.....anRE.EG...N...SIGITKPEVCHCIFNDLRVTRDQEGIE.RTWSRISYNRRQRMTY.............DET-............-............GDVIRYA----GDIIDYMEIANLL.KTyDS.R..T....YYLNTLEEDSIV---KFCESEEW.FGEYDAMIan.rsGSMK.EVKD...C...INGWFSY---VNRR--le......
W8T4M6_EUBAC/1-208             ..-------.-------------------------------------------------....-.-.....---.-----------------MYY......VQD..E..YVY.ISERTLKFIEDTDQPAFFKDVCYKFQVPNGMQKTATVLTRIKDNLSLR.....PNAFVLKVLD........YA.KN...A...GIRLSKKDIGYYVLNSLDVLSGKASPL.EVIECILEDKKNGISR.............LIKT............E............GKASSYDYQHINEQLNYLELANLI.RT.DSdG..T....ISLNILEQKTIDVFIESLNLPLF.FSFSNYDI.....SNKQ.SVSA...M...HTDWDFYYSKL-----sdasn...
A3FMN7_BACPU/1-285             ..MNYNPEE.QFRCTIIRGKAKNMLDNLLPAYANIIDDICPCDKASFVKDFNNRLIEIL....G.E.....ETT.KKTLDNHRTEIAGKLFGMFY......EDD..E..VIF.PSGRTNKYIEDSDQPAFFKDICFKFQFPNGMDKLDKVIEKVGAKIQIR.....QFPYILQVLL........TA.DN...N...NIQLSKDDIAYYVLNSLQVLQGKIKPI.EVIEKIIEDRSNDITK.............KVRH............P............GKETSYSMQHIREQLNYLELANLI.RI.DG.N..L....VKLNYREAENINYIAQFWGNKPE.FNAYKYDF.....TSED.DKKS...F...FKDWQQYYSNVNSHKS........
#=GR A3FMN7_BACPU/1-285  SS    ..----TTS.B--------SSSTTHHHHHHHHHHHHHHH-SEEHHHHHHHHHHHHHHHH....-.T.....T--.HHHHHHHHHHIIIIIS--EE......EET..T..EEE.E-HHHHHHHHH--HHHHHHHHHHH--BS-SSS-HHHHHHHHHTT--B-.....HHHHHHHHHH........HH.HH...T...T--B-HHHHHHHTTTBHHHHTT---HH.HHHHHHHHHHHTT---.............----............T............T--HHHHHHHHHHHHHHHHHTTSE.EE.-S.S..-....EEE-GGGHHHHHHHHTTTTS--S.S-GGGS-T.....T-HH.HHHH...H...HHHHHHHHH--XXXXX........
J1N6G1_STREE/1-281             ..MYQVPEKyYFRLHHPRPRFKNDVENVLVYMATNISYLGILPKKEFSQQLNDIIKQYA....G.N....aDKT.EKTINNWRTEIS-SLFGMMI......EKE..G..FVY.SGNRAKELTEDQDLIRFFKTFLYNFEYPGGHLKDNEIVKLCQIGVQFK.....PAQYLLELFTe.....asQA.EE...K...TIYLTDEEVAHCIFNDLRCTRDREPVL.EIWNRIKENRASKVAY.............DTK-............-............GDVIRYA----KDILDYMVIASLL.TV.QG.G..R....YKINSMEEQAIN---DFLQSDAT.FDGYAQFIgn.asTTIE.DVRN...F...RSAWFEY---VNRDLG........
V8JS55_STREE/1-281             ..MYQVPEKyYFRLHHPRPRFKNDVENVLVYMATNISYLGILPKKEFSQQLNDIIKQYA....G.N....aDKT.EKTINNWRTEIS-SLFGMMI......EKE..G..FVY.SGNRAKELTEDQDLIRFFKTFLYNFEYPGGHLKDNEIVKLCQIGVQFK.....PAQYLLELFTe.....asQA.EE...K...TIYLTDEEVAHCIFNDLRCTRDREPVL.EIWNRIKENRASKVAY.............DTK-............-............GDVIRYA----KDVLDYMVIASLL.TV.QG.G..R....YKINSMEEQATN---DFLQSDAT.FDGYAQFIgn.asTTIE.DVRN...F...RSAWFEY---VNRDLG........
G6RL09_STREE/1-281             ..MYQVPEKyYFRLHHPRPRFKNDVENVLVYMATNISYLGILPKKEFSQQLNDIIKQYA....G.N....aDKT.EKTINNWRTEIS-SLFGMMI......EKE..G..FVY.SGNRAKELTEDQDLIRFFKTFLYNFEYPGGHLKDNEIVKLCQIGVQFK.....PAQYLLELFTe.....asQA.EE...K...TIYLTDEEVAHCIFNDLRCTRDREPVL.EIWNRIKENRASKVAY.............DTK-............-............GDVIRYA----KDILDYMVIASLL.TV.QG.G..R....YKINSMEEQAIN---DFLQSDAT.FDGYAQFIgn.asTTIE.DVRN...F...RSAWFEY---VNRDLG........
V6T7S0_9BACI/3-287             .l-YNVPSKhYFRLHHPRPRFKNDIENVLIYFASEIAAIGRKRIRDFVLDFDFAIKKYP....G.N....lTKT.QKTINNWRTEID-ALFSFIE......REG..D..YLK.PSKRAIELATNQDLVKFFKLFCYHFQYPGGFLKPHVNLEYLRNGINFR.....PCSYILELLT........EA.EA...QegvRVGISKSEATHCIFNDLRVTRDGRTPK.ATWRLIRKNRQMDLEY.............DWR-............-............GDVIRYA----GDILDYMVQANLL.VS.RP.N.hK....YYINQTESIAIR---RFLNPTNDlFDYYNE-IadvatLTLS.EVKE...L...DAEWVSYFN-------tprdeg..
A5LKH4_STREE/1-281             ..MYQVPEKyYFRLHHPRPRFKNDVENVLVYMATNISYLGILPKKEFSQQLNDIIKQYA....G.N....aDKT.EKTINNWRTEIS-SLFGMMI......EKE..G..FVY.SGNRAKELTEDQDLIRFFKTFLYNFEYPGGHLKDNEIVKLCQIGVQFK.....PAQYLLELFTe.....asQA.EE...K...TIYLTDEEVAHCIFNDLRCTRDREPVL.EIWNRIKENRASKVAY.............DTK-............-............GDVIRYA----KDILDYMVIASLL.TV.QG.G..R....YKINSMEEQAIN---DFLQSDAT.FDGYAQFIgn.asTTIE.DVRN...F...RSAWFEY---VNRDLG........
R7J3F2_9BACT/4-309             .y-YSIPDKdYLRIHFVRPRFKSNIENVLLYMANACCKIEPCPCREYADQINRAIRLFP....G.N....aDLT.QKTIDNWRTEIS-ALCAFYN......EDKisD..LTR.TSNLSFFLNENQDLTQFFKFLMLSFQFPGGHIKPSDNIELIYNGVKFK.....PAQFIIKVLMvgneilsaIG.SE...K...DMSISDEEATYCILNDLQVTTGKRSPK.EVAQIILDNRKNNLGY.............YNRK...........dPnvfnskgeprtkGDVVRYA----GDIMDYMEIASLL.ER.RM.D..G....YFI--LKPNSLQELATFINDDSY.FEGYNRFYgv.khLTPS.MLSP...I...EEQWFSY---------vdslldpn
F5S6P5_9NEIS/4-306             .t-YQIPEEyFFRLHHIRPRFKSNVEEVLLYVANSISDLGKLPEKAFNEQLNAVLRNFV....K.N.....QTAeQKTINNWRTEIA-ALFSFIQ......ETE..N.nELL.PSKMAKRLAENQFLDEFFNYFLYSFQYPAGHNKSHAVIAQIQNGIQFRpcqfrPCQFILQIFQa.....acKL.SD...K...PFYLTAEELTQCAYFDLRVTSHQTKTAnDVAKQIIENRENKVSY.............NHKYeqlktesgnypsS............GDVYRYA----GDILDYMVLANLL.KT.KGtG..H....YYLNT---DNTDFIKRHLDNTAW.FNQYADFYgk.qeISAR.EITV...L...EKKWFDY---VN----qfdn....
F9HC57_STRMT/1-119             ..MYQVPEKyYFRLHHPRPRFKNDVENVLVYMATNISYLGILPKKEFSQQLNDIIKQYA....G.N....aDKT.EKTINNWRTEIS-SLFGMMI......EKE..G..FVY.SGNRAKELTEDQDLIRFFKTFCI-------------------------.....----------........--.--...-...---------------------------.----------------.............----............-............------------------------.--.--.-..-....-----------------------.--------.....----.----...-...----------------ilnilvg.
F2BHI1_STRSA/1-281             ..MYQVPEKyYFRLHHPRPRFKNDVENVLVYMATNISDLGILPKKEFSKKLNEIIKHYA....G.N....aDKT.EKTINNWRTEIS-SLFGLMI......EKE..G..FVY.SGNRAKELTDDQDLIRFFKTFLYNFEYPGGHLKDNEIVKLCQIGVQFK.....PSQYLLELLTe.....asQV.EE...K...AIYLTDEEVAHCIFNDLRCTRDKEPVL.KVWNRIKDNRESKMVY.............DTT-............-............GDVIRYA----KDILDYMVIASLL.SV.QG.G..R....YKINSIEEQAIN---EFLQSDTV.FDGYAQFIgk.ssTRIE.EIRE...Y...RSAWFEY---VNRDLG........
R5SQ65_9CLOT/1-286             my---NRLN.QYRCIIIRGKSQKEIDDLLPAYAKVIDDITPCEVEAFSQKFNELLAPYL....S.A....dKRI.KKTLDNHRTEIAGKLFGMYY.....vEEN..G..YVY.ASERTRKFLKDNDQPAFFKDLCYKMQFPNGMQKPQTFQPLLDNKISIR.....PNAFVLRVLQ........LA.AA...K...HLVLNKKEIGYYILNSLDVLQGIAVPE.EVIEAIEKDRKEGVVR.............KIEA............E............GKASSYNYQHINEQINYLELANLI.YT.NGtG..E....VWLNQNESDAIQIFASDWNKTPE.FDVYSFDL.....STVE.GRKQ...F...ELEWTAYFGKL-----sdkv....
V8KIU3_STREE/1-281             ..MYQVPEKyYFRLHHPRPRFKNDVENVLVYMATNISYLGILPKKEFSQQLNDIIKQYA....G.N....aDKT.EKTINNWRTEIS-SLFGMMI......EKE..G..FVY.SGNRAKELTEDQDLIRFFKTFLYNFEYPGGHLKDNEIVKLCQIGVQFK.....PAQYLLELFTe.....asQA.EE...K...TIYLTDEEVAHCIFNDLRCTRDREPVL.EIWNRIKENRASKVAY.............DTK-............-............GDVIRYA----KDVLDYMVIASLL.TV.QG.G..R....YKINSMEEQATN---DFLQSDAT.FDGYAQFIgn.asTTIE.DVRN...F...RSAWFEY---VNRDLG........
T1CPP8_9PORP/1-274             ..-------.---------------------MANECCKIPTCSCAEYSKRYLDAIRLFP....E.N....iGLA.EKTLQNWRTETP-ALFGFYT......EDKlsD..VTT.TSRMATFLNENQDLTQFLRLFLRTFQFPGRHLKPNENIPLIKKGIRFK.....PAQWIVRVLLagn..ellAG.RG...K...EMSISGLEATYCIFNDVFVTSGVLTPR.EVAQTILYNRENKIKY.............YNKK...........dPriqsrtgkpmslGDVKRYA----QDILDYMELASIL.EE.HN.G..F....FYLKPNEVKV---IASFKEDNLF.FDGYESFYse.qgYTTT.DIAR...V...EVDWFDY---VNSN--lden....
R6CY61_9BACE/7-309             .y-YDVPNEyWYRIHFVRPRFKSNIENVLLYMANECCRIPKCSCDEYNTRYFNAIKMFP....G.N....iDMT.KKTLDNWRTEIP-ALFGFYK......EDK..EkgITE.TSQMAVFLHENQDLTQFLRLFLYSFQFPGGHMKAADVRDVIKNNIKFK.....PARTIIQVLMagneilsrNN.NS...K...EMSMSAEEATYCIFNDVRVTNGSVSAK.KIAQRILDNRKNKIKYynpedknvlslagKPRT............K............GDVTRYA----KDILDYMELANLL.TI.SN.G..Y....YYLKGNEVAAIQ---KFKDDKTW.FNGYDSFYkr.nnIETK.ELNQ...I...EPQWFEY---VN----dsmk....
#=GC SS_cons                   ..----TTS.B--------SSSTTHHHHHHHHHHHHHHH-SEEHHHHHHHHHHHHHHHH....-.T.....T--.HHHHHHHHHHIIIIIS--EE......EET..T..EEE.E-HHHHHHHHH--HHHHHHHHHHH--BS-SSS-HHHHHHHHHTT--B-.....HHHHHHHHHH........HH.HH...T...T--B-HHHHHHHTTTBHHHHTT---HH.HHHHHHHHHHHTT---.............----............T............T--HHHHHHHHHHHHHHHHHTTSE.EE.-S.S..-....EEE-GGGHHHHHHHHTTTTS--S.S-GGGS-T.....T-HH.HHHH...H...HHHHHHHHH--XXXXX........
#=GC seq_cons                  ...YplPccYaaRLHHsRPRFKsclENVLlYMAspIuhlshhspc-FspphNshI+pas....G.N....s-ps.pKTIsNWRTEIu.uLFGhhh......Ecc..s..hsh.supRApcLsEsQDLhcFFKpFLasFpYPGGHlKsp-llclhp.GlpFK.....PspalLclhp........pu.Ep...K...slhLTccElsaCIFNDLRsTpcppssh.Elhp+IhcNRpscltY.............-s+..........................GDVhRYA....tDILDYM.lAsLL.ps.pG.s..c....ahlNshEppAIs...cFlpscsh.FcuYspFlup.tssolc.-l+s...h...cssWFcY...VN............
//
DBGET integrated database retrieval system