GenomeNet

Database: Pfam
Entry: Cas_Csm6
LinkDB: Cas_Csm6
Original site: Cas_Csm6 
#=GF ID   Cas_Csm6
#=GF AC   PF09659.9
#=GF DE   CRISPR-associated protein (Cas_Csm6)
#=GF AU   TIGRFAMs, Coggill P
#=GF SE   TIGRFAMs
#=GF GA   23.40 23.40;
#=GF TC   23.60 29.50;
#=GF NC   23.10 23.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR013489;
#=GF CC   Clusters of short DNA repeats with nonhomologous spacers, which
#=GF CC   are found at regular intervals in the genomes of
#=GF CC   phylogenetically distinct prokaryotic species, comprise a family
#=GF CC   with recognisable features. This family is known as CRISPR
#=GF CC   (short for Clustered, Regularly Interspaced Short Palindromic
#=GF CC   Repeats). A number of protein families appear only in
#=GF CC   association with these repeats and are designated Cas
#=GF CC   (CRISPR-Associated) proteins.
#=GF SQ   68
#=GS CSM6_MYCTU/62-407         AC P71635.5
#=GS R7K0T6_9CLOT/71-437       AC R7K0T6.1
#=GS E8LEC4_9FIRM/67-430       AC E8LEC4.1
#=GS A3CN94_STRSV/101-472      AC A3CN94.1
#=GS E6LHV2_9ENTE/67-428       AC E6LHV2.1
#=GS D5X8I5_THEPJ/70-454       AC D5X8I5.1
#=GS E6MH22_9FIRM/72-463       AC E6MH22.1
#=GS G9PWQ3_9BACT/93-468       AC G9PWQ3.1
#=GS T1ZET2_STRIT/2-248        AC T1ZET2.1
#=GS A0A091C6M1_9ENTE/59-411   AC A0A091C6M1.1
#=GS A0A0A0DHM4_9STRE/1-250    AC A0A0A0DHM4.1
#=GS G5K2N3_9STRE/1-242        AC G5K2N3.1
#=GS K9T3T4_9CYAN/146-417      AC K9T3T4.1
#=GS G4D1Y7_9FIRM/68-440       AC G4D1Y7.1
#=GS Q9A080_STRP1/1-252        AC Q9A080.1
#=GS Q8DZD1_STRA5/4-252        AC Q8DZD1.1
#=GS A3CNA5_STRSV/2-251        AC A3CNA5.1
#=GS E2ZE75_9FIRM/63-439       AC E2ZE75.1
#=GS Q8DTU7_STRMU/1-251        AC Q8DTU7.1
#=GS Q8DTU7_STRMU/1-251        DR PDB; 4RGP A; 2-251;
#=GS Q8DTU7_STRMU/1-251        DR PDB; 4RGP B; 2-251;
#=GS Q0AW60_SYNWW/28-409       AC Q0AW60.1
#=GS U2YBM8_STRCV/1-237        AC U2YBM8.1
#=GS K1MS93_9LACT/9-255        AC K1MS93.1
#=GS A0A074LN97_9BACL/196-467  AC A0A074LN97.1
#=GS A0A139NRK6_9STRE/49-405   AC A0A139NRK6.1
#=GS F9EMW0_FUSNU/66-317       AC F9EMW0.1
#=GS A0A0M2Q0C9_PROHO/141-418  AC A0A0M2Q0C9.1
#=GS J4XM49_9ACTN/42-376       AC J4XM49.1
#=GS A0A0E8VM32_MYCTX/62-407   AC A0A0E8VM32.1
#=GS N1ZIM5_9CLOT/69-443       AC N1ZIM5.1
#=GS A0A139NS57_9STRE/66-309   AC A0A139NS57.1
#=GS D4CPB9_9FIRM/51-430       AC D4CPB9.1
#=GS C0ME47_STRS7/3-253        AC C0ME47.1
#=GS Q5M4I1_STRT2/1-339        AC Q5M4I1.1
#=GS G9YKC4_9FIRM/63-439       AC G9YKC4.1
#=GS B9DUJ9_STRU0/3-253        AC B9DUJ9.1
#=GS D4S3I5_9FIRM/71-453       AC D4S3I5.1
#=GS R5DSI7_9FIRM/80-452       AC R5DSI7.1
#=GS V6Z470_STRAG/2-250        AC V6Z470.1
#=GS F9N3W8_9FIRM/64-443       AC F9N3W8.1
#=GS J4K7G4_9FIRM/72-461       AC J4K7G4.1
#=GS G0VQ63_MEGEL/65-444       AC G0VQ63.1
#=GS R9NDJ6_9FIRM/71-448       AC R9NDJ6.1
#=GS R5DC62_9FIRM/69-435       AC R5DC62.1
#=GS U2J974_9STRE/1-252        AC U2J974.1
#=GS A0A0J6WPJ9_9FIRM/63-441   AC A0A0J6WPJ9.1
#=GS K1LDW6_9LACT/5-251        AC K1LDW6.1
#=GS A0A0P6S4Q6_9STRE/3-253    AC A0A0P6S4Q6.1
#=GS Q5HK94_STAEQ/68-420       AC Q5HK94.1
#=GS R7BKG5_9FIRM/71-442       AC R7BKG5.1
#=GS A0YRM2_LYNSP/168-453      AC A0YRM2.1
#=GS A0A139NRE8_9STRE/1-251    AC A0A139NRE8.1
#=GS A9AZH4_HERA2/190-467      AC A9AZH4.1
#=GS K9ZAD1_CYAAP/145-427      AC K9ZAD1.1
#=GS G6EPC8_STRTR/1-260        AC G6EPC8.1
#=GS G5KGL3_9STRE/2-255        AC G5KGL3.1
#=GS G5GF87_9FIRM/67-443       AC G5GF87.1
#=GS R5EWA6_9FIRM/1-177        AC R5EWA6.1
#=GS T0U3V7_9STRE/1-170        AC T0U3V7.1
#=GS S5QWN9_9STRE/3-252        AC S5QWN9.1
#=GS A0A0U3ELS4_9STRE/3-252    AC A0A0U3ELS4.1
#=GS V2Y4F7_9FIRM/69-445       AC V2Y4F7.1
#=GS F9EMV9_FUSNU/1-116        AC F9EMV9.1
#=GS A0A0A0DHN2_9STRE/101-349  AC A0A0A0DHN2.1
#=GS E4KQY9_9LACT/5-263        AC E4KQY9.1
#=GS H3NHN7_9LACT/10-263       AC H3NHN7.1
#=GS R7NCI7_9FIRM/68-436       AC R7NCI7.1
#=GS A0A0D6XRH5_9STAP/68-417   AC A0A0D6XRH5.1
#=GS V4QWS1_STRIN/2-253        AC V4QWS1.1
CSM6_MYCTU/62-407                    ............................TDVRIVT..-YTNPS.VHRFDLFVPVFRNHLVELSAE.FPDRTILLNTSSGTPAMQAALVAINV.FGI.P..RTTAVQVSTPARALSKp..gDRESPDAY...D.LELMWD..ANDDNQP.G.A.PNRCFEATS.AALGALLERANLKQLIVSYDYSAAVTIAAD....--...SR.LPD..QVS........NLI.R...GAMHRSRL.E....H.....L.....VA......P..K.....F......F.K..D.......T...A........F..T...Y...D..P.....-.-.-.......-..-.ANK...........VA..E..YISALALLAKREQWAEFARSATPAITIV............LRAAVAKHLP......----.-----E.......D.R..YLDDM..............GRV..D...R..RKL...eREP..........E.IRCALKHPP....KSPNA.E.W.YLYTKD....WLALLRQFA-.........--PD.R--....VGA.LEVLGRFE......SRVRN..TAAHEIVS.ISEDRITKDG.......G.....LL......PEQL.L..K...I..LA----.----....RE.T.GADLT.LYDRLNDEIIR.................................
R7K0T6_9CLOT/71-437                  ............................YEIEIVE..RRELTK.VHEFDYFYQDFRNIIQNIYNDmNKDDTLLLNVSSGTPAMKSGLLVLQT.LGE.F..PAKLIQVVTPERKINE....--HIHRDY...D.VQTLWE..LDEDNNE.N.Y.ENRCGEIEC.PSLSSIKKEEMIKKHVEVYDYQAALDVADT....LS...VQ.ETV..AYW........DLL.E...LASRRILL.D....F.....S.....GV......D..K.....L......A.V..K.......S...G........V..Q...C...L..P.....I.R.A.......S..S.ERK...........YF..E..YALSVGIKLKKEEYADFVRAITPLIVDL............FEMILKKQCG......VDVN.AYCDVS.......E.R..NQV--..............RRW..S...R..KKL....AGT..........Q.VGEILEKEY....KERFQ.Y.K.DVYSVH....LKLLIENIS-.........--TD.TEL....IQL.INNVRSVE......EGVRN..LAAHQIIS.VTDETIRQRT.......G.....FT......TTQI.M..D...M..IKRLFS.YTGI....SV.K.KDYWD.SYDQMNDLIIE.................................
E8LEC4_9FIRM/67-430                  .....fiytdivnvqlmeelvplaegfl-------..------.----------------ELRKE.FPEEEILLNLSSGTPQMKTVMSFLAT.-DF.E..NVRAIQVDSPQRASNR...tAHATQDNE...D.INVVIE..NNFDNVP.D.Y.TCRCHEAPL.SLLRRYSIRHQLISLINNYEYRAALTMYNK....NK...IM.FVE..ETG........NLL.R...HADLRSKL.L....I.....N.....EA......F..K.....G......M.G..K.......E...N........I..-...-...-..-.....Y.N.N.......N..S.VKK...........LN..E..FLMVMELHQRKGELAEFIPKLTPFLYEL............LLYYFENHVA......LKLE.RFCYRK.......R.N..NNSSW.............kISA..E...K..LRK....EAP..........D.VFTYLNYYF....RQGFR.D.T.DLSFSN....MLLILESLK-.........-SVK.TEL....MGE.LQILREVE......KNQRN..KIAHTILTdVTEENLQAIE......pK.....LS......SYQI.I..Q...H..LRKAFL.LIME....GE.S.ICKRN.VYDDLNRRIV-d................................
A3CN94_STRSV/101-472                 .................vqipviqneyv-------..---TEG.VHEFEAMYKFVEKILDR-EDM.SNG-DYILNITSGTAQCQAAMYFINF.IKD.Y..HTRLARVDSPNGKKTN....RSNQGAPY...F.EEVVLDdlLKKQTAE.K.E.DERKPEIETgEKLKNNLLQRTYKDFILKYEYKAALDILKAn.pdII...SN.KDD..QEK........SKK.A...LENMISVF.Q...kQ.....K.....VL......K..E.....L......A.A..D.......S...K........L..K...Y...N..D.....-.-.T.......G..E.FQK...........VL..N..YYLMIDILNRRGQVTDVLVKAKSFAEFV............IGNYLFRKYE......RYVK.TTSKGF.......K.L..NLESL..............NND..E...I..SEI....CDY..........I.TQEIKKVNP....KGSFG.R.K.SDLMIH...sFRHLVIFLE-.........--GR.SAI....VTS.TQKVTEL-......NSKRN..NVAHGLAE.ISV---LQE-.......-.....-E......LNEL.V..K...G..LKKLVI.AAYSdkkvYL.Y.QEYFD.YYDQKNQDLI-s................................
E6LHV2_9ENTE/67-428                  .....................ncqieik-------..CDTIEV.ENDFDAYKDLFHQYLVEEKRK.YPNAEIFLNVTSGTPQMETTLCLEYV.TYP.D..KMRCIQVSTPLKTSNA....KTKYAQAD...C.QEVDLE..IVNEEES.Q.Q.PSRCHKIAI.LSFREAIVRNQIKSLLDNYDYEAALQLVAS....QK...SF.RNG..KEIr......kKLK.E...LI------.D....D.....I.....KM......H..R.....V......F.-..S.......Y...L........I..K...Q...Y..P.....R.N.E.......K..L.QKA...........LL..H..TIL-LEMRHQRGDIAETLIRVKSIAEYI............VEQYIQKNYP......YLII.-----Y.......K.E..DK-PY..............FNV..S...Y..SQE....LTE..........S.YLALMDSRN....KKTNK.K.M.TVDSLDrilgFPAYRDFLQL.........LEAS.NEM....TNE.MNKVNEI-......NNLRN..KVAHNLDS.LNLDRDKNGR.......K.....IT......NA--.V..T...A..VRTMLL.AVFP....EV.Q.ENDFH.YLKQFNQSIK-e................................
D5X8I5_THEPJ/70-454                  ........................dkhl----IFS..--GIQN.PHDFDAFIGVFSKHLEEISKD.HPEATILLNVSSGTPQMMSMLCLETV.VSS.K..RLVPVQVITPAARANL....SKMGGPDY...D.VEWEFG..NNLDNEP.D.A.PNRCVQPDI.QSFKRALARGQVTALLENYNYEGAALILGG....YG...LG.TDS..TVM........GLL.R...FAIALKNL.D...sD.....A.....KG......S..Q.....F......Q.E..A.......R...A........L..T...G...Y..P.....Q.M.D.......W..E.CLE...........IC..E..YCNVVKLLQRTGQLADFLLRLNPLVTELqtkflkyclgfaVEAI------......--IEeRHCAGR.......K.N..TAGKFte..........rlVRR..D...K..IRA....LNP..........E.LLAYLDECH....NGEYR.D.G.SHVNIR...mQNCLINFFLR.........KNPD.SQT....RSF.AGFLDTMEi....lNRDRN..LAAHNLYG.VLEEDIKQRS.......G.....LT......GGQI.V..D...K..LENLIK.FIFK...gRC.K.PEIFT.IFDTVNNVI--ng...............................
E6MH22_9FIRM/72-463                  ...........................p-EIEIIE..RPELRN.VQYFDIFFDEFWEKISQITDEmAEDDELLLNVSSGTPAMKSGLEVLQT.IRG.FsrKTRLIQVDTPTKKMNE....--HAHEGF...D.VELAWE..VDVDNAP.D.F.KNRCHEFEC.RSLKNIQDEEIIKQLVKDYDYRAAMAVAKD....M-...PE.PDP..AYL........DKL.K...LARARQLL.D....F.....S.....TV......T..K.....L......E.K..K.......T...G........M..D...V...T..P.....V.K.S.......G..D.ARK...........SF..E..YALLLWIKKDRREYVDFCRALTPLIVDL............FEQILRCQCK......IDIN.QYVYGDfpgwvrrK.C..EEEGWneeerekrfrgakiCKW..H...K..GRL...kQDE..........K.IFSVFQKAY....SSGVA.N.R.NISSDH....LLKLIEEFC-.........--KN.RAI....RDA.AKQIREVE......EAIRN..DSAHEMVS.VTEDVIEHRT.......G.....LT......TDEI.L..K...L..IKRLFG.YTGY....GI.K.EADWH.SYQAMNQEIV-q................................
G9PWQ3_9BACT/93-468                  ...........................f-DVEVQK..CADITE.VHKFDLFYEEFEKRLKKISDE.NPESEILVNISSGTPAMKSALQFIAA.LGSvE..RLTAIQVATPEKKCNK....HRAPAVNY...D.LETEWA..CDEDNET.EtF.EDRSEVSGS.LNLAARIKRETLIKHVEAYDYHAALSIAVG....LG...DK.IPP..LAL........KLL.D...AAAARAQL.N....L.....N.....RI......Q..I.....S......L.K..E.......T...G........V..K...I...I..P.....V.E.S.......S..D.LRN...........IA..E..YLLWLDVKLKRGELADFIRGLTPLIADL............FEYYISKVLK......IDIR.KYCDSS.......G.E..YSLKL..............KRY..K...L..ERT...sEGM..........K.ILEMLDAQF....-NCYK.D.D.YLSSKN....MLCILKAFC-.........--AD.KMA....AEL.FENIRNVE......SAVRN..IAAHEIIA.ITPELIEKKT.......RengcaSA......PAGI.L..N...M..LFKAAE.LYGI....-P.Q.GKIKN.SYGEMNELIK-e................................
T1ZET2_STRIT/2-248                   .......................vgnld-------..------.---------------------.--------------------------.---.-..----------------....--------...-.------..-------.-.-.---------.-------LKEEIVYAISRYDYAHAYKLAKR....LD...-N.VEA..KLV........EVL.Y...IMAERREL.N...iH.....P.....AM......E.cQ.....L......E.I..R.......N...D........F..Q...L...F..C.....H.E.S.......E..E.DEQ...........LA..N..YLYDLEAKLKNEQVIDFIRAVSPAIYRI............FMRLVKLEIP......-DIE.SYIHNS.......R.E..AS--Y..............DRWnfD...R..MKN....IGH..........P.ILSTFH---....----A.E.S.TVHSSS....LASLILLLD-.........--LS.EQV....KIM.VKELRKLE......KSVRN..PLAHLIKH.FDEEELYSTT.......G.....FS......SQFF.M..E...I..LILLAQ.ATGI....TY.D.KEQF-.YFDRVNQVIK-t................................
A0A091C6M1_9ENTE/59-411              ........................yqpe----IVV.dKRTISN.NDIF-LFDKMFETLSGIIQEYaKKEEEIILNLTSATPQIISAMFSINR.IGE.L..NVRAYQVATPNYSSNE....GVLHNNGQ...D.MQKLIA..ENKDNKE.D.Y.TNRLIEDKA.EKFQQLLVRKTFLDLINMYDYEGAFQISSS....NK...LM.LSK..NKR........KAV.N...KTLEPLIS.-....S.....I.....KT......Q..N.....L......I.P..E.......V...Q........F..-...-...S..D.....-.F.N.......F..E.QQT...........IL..N..AYLLISLQARRDLNSEVLIRVKNFAEFI............TELYFDNNYP......GLIV.------.......-.-..-----..............RKN..E...L..PYL....NPE..........D.YGNIMQDLQl.nlKKANK.E.L.NLERYL...sLPIYAEILRV.........AEPK.SHL....LKL.VDKVNGV-......NSIRN..QVAHGFIP.IDTKQFKIRD.......-.....--......----.-..-...-..------.----....--.-.-----.-----------lsetcwqllketidvdeqwktffenknhefkn.
A0A0A0DHM4_9STRE/1-250               ........................mnld-------..------.---------------------.--------------------------.---.-..----------------....--------...-.------..-------.-.-.---------.-------LKEEILFAISRYDYAYAYKLAQQ....LI...NG.-SS..LLT........KLL.H...ILAERREL.N...iL.....P.....AM......D..EelktaL......Q.M..Q.......S...G........F..Q...L...F..C.....H.T.D.......L..A.DEQ...........LA..N..YLYDLEAKLRNEQIIDFIRAVSPAIYRI............FMRLIKLEIP......-DIE.HFIHNS.......R.E..AS--Y..............DRW..K...F..ERM....RES..........D.Y-AVLQDFH....----A.E.S.TVNSSS....LTELILCLD-.........-LPE.S-V....KEE.VRQLRELE......KSVRN..PLAHLIKP.FDEMELYRTT.......G.....FS......SQHF.M..E...I..LVDLAR.FTGI....VY.D.REDF-.YFDEANRLV--ra...............................
G5K2N3_9STRE/1-242                   ...........................m-------..------.---------------------.--------------------------.---.-..----------------....--------...-.------..-------.-.-.---------.----------------DVYAYNHAYKIAKS....LP...EF.-PN..KAL........YLI.E...LLKERREL.N....V.....SylfqhNT......Q..N.....K......A.I..E.......E...A........Y..D...I...N..L.....I.M.N.......AnpE.EEQ...........IA..N..YILDLEVKAKNGDIIDFVRSVSPILYRL............FLRLMEKEVP......-QFK.SYIFDA.......K.N..DQ--Y..............DTW..N...F..QAM....LDS..........N.-LEVFKTYL....-SQRQ.S.R.NVTTRSl..aDLLVLSNL--.........---S.EEI....KTL.VVTLRKFE......KSVRN..PSAHLIKP.FDEEELHRTT.......H.....FS......SQVF.L..E...G..IIRLAT.FSGV....SY.Q.REPF-.YFDQVNAII--ek...............................
K9T3T4_9CYAN/146-417                 .................wqvrnpdkmmp-------..------.---------------------.--------------------------.---.-..----------------....--------...-.------..-------.-.G.QSRVFETNV.NSLKKEFDLKVIREQINNYNYSGALANFKE....SG...LK.-DN..GVS........VLL.E...YGRCRLAC.D....F.....Q.....KA......R..Q.....E......I.H..Q.......F...R........T..I...I...D..P.....R.L.SeeidrlaS..H.DQK...........YFvvE.lYFQAL-TKLKNQEYSNFLVLLFAFQESV............LRFQVRKRLC......PKLL.NYPWKD.......V.K..EQV--..............EKA..-...I..QQY....QEG..........Q.LYSYLQNYRl..pNGRSL.Q.L.NHPSRP...vLLAILEYVS-.........--EQ.SSL....LEP.LKKINKY-......CDQRN..DYVHQFEG.VSF-------.......-.....--......----.-..-...-..------.----....--.-.-----.-----------ledqerlvrdirkivrqiaqipeqnsfellnqq
G4D1Y7_9FIRM/68-440                  ...........................v-EIEIIK..DESLEE.VQIFDNFYEIFRETLNDIHYK.NPNDEILLNISSGTPAMKNALFVLSK.LGN.Y..KMKAIQVDTPTKAANR....-KFEDNDF...D.LDAVLE.iIAEKSNE.N.I.VNRSREAAS.NNFNYEIKRELIFSQLDSYNYSSALQIART....IE...EM.LSE..KTM........NLL.N...AAYYRSIL.N....I.....K.....SM......V..S.....F......L.R..K.......A...D........E..D...F...F..R.....-.I.K.......G..D.GED...........IL..E..YFLYLKTLKNKEMFLDLIRGITPLVTEL............FILIIDKNAD......IKLK.NYWKYN.......Y.G..KK-HY..............-VW..D...E..DKL...nRDE..........K.GREIVNAI-....KSKFP.Y.F.TYNSFI...qNVHLIEIIKNe.......rIIDN.QKI....LDL.SLEIRDVE......GKLRN..RAAHEIIR.IDDSLIKRES.......K.....FG......SDEI.L..D...K..IFELMK.LSGL....EI.G.NNHYD.SYDLMNKKIK-k................................
Q9A080_STRP1/1-252                   ......................mtnnqt-------..------.---------------------.--------------------------.---.-..----------------....--------...-.------..-------.-.-.---------.-----------LDILLDVYAYNHAFRIAKA....L-...PN.IPK..TAL........YLL.E...MLKERREL.N....L.....AflaehAA......E..N.....R......T.I..E.......D...Q........Y..H...Cs.lW..L.....N.Q.S.......L..E.DEQ...........IA..N..YILDLEVKVKNGAIIDFVRSVSPILYRL............FLRLITSEIP......-NFK.AYIFDT.......K.N..DQ--Y..............DTW..H...F..QAM....LES..........D.H-EVFKA-Y....LSQKQ.S.R.NVTTKS....LADMLTLTS-.........--LP.QEI....KDL.VFLLRHFE......KAVRN..PLAHLIKP.FDEEELHRTT.......H.....FS......SQAF.L..E...N..IITLAT.FSGV....IY.R.REPF-.YFDDMNAIIK-k................................
Q8DZD1_STRA5/4-252                   .........................fst-------..------.---------------------.--------------------------.---.-..----------------....--------...-.------..-------.-.-.---------.----------ALKVLVDQYSYHNAFLLLQK....-H...GP.LNS..DLL........FLL.E...MMKERREL.Ni..dF.....L.....FA......H..QeqvviL......Q.E..K.......Y...N........I..K...L...L..H.....-.N.P.......Y..D.LEL...........LA..N..YIMDLEAKVKNGLIIDFVRSVSPILYRL............FMILLAQEVP......-HLH.DYIHNA.......R.D..DH--Y..............DTW..K...F..KEL....KES..........N.HPVLL--AF....SERWH.D.S.RLTSKS....LAECLQLTD-.........--LD.EEV....KST.IIQLRQFE......KSVRN..PLAHLIKP.FDEQELYRTT.......Q.....FS......SQAF.L..D...Q..IIFLAK.VIGV....EY.D.TVNF-.HYDTVNKLIIN.................................
A3CNA5_STRSV/2-251                   ........................qvdv-------..------.---------------------.--------------------------.---.-..----------------....--------...-.------..-------.-.-.---------.--------KEAILFAISRYDYAYAHKLAER....AG...SS.VQS..DLV........LLL.E...ALAERREL.N....I.....Q.....SI......M..N.....LkleitrS.D..L.......A...D........F..Q...L...F..C.....H.E.N.......E..A.DEQ...........LV..N..YLYDLEAKLRNEQLIDFIRAVSPAIYRI............FMRLIRMQIP......-DID.SYIHNS.......R.G..AS--Y..............DRW..K...F..EKM....RHS..........D.NPDL-QN--....--FHA.E.S.TVNSSS....LTELILQLN-.........-FPE.S-V....KES.AQQLRELE......KSVRN..PLAHLIKP.FDEEELHRTT.......G.....FS......SQHF.M..A...L..LVDLAQ.ETGI....VF.Q.REPF-.YFDRANVVI--es...............................
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G9YKC4_9FIRM/63-439                  ...........................c-EIEFIK..-SGITE.PQNYEKLLY-LQEKFDELFGK.FPNVKWVLNISSGTPQMKTIMSFLSV.DYP.-..SCTAVQVSNPHVDRDK....VAEHCEKE...E.YVQMLE..CNEDDNP.N.S.RKRCTEPPL.LMVRRHGIRLQIESLVRNYEYGGALQLVEQ....NR...RL.FSD..TTE........KLL.R...HSVCRTML.N....W.....R.....EA......N..K.....I......I.S..E.......Y...K........G..K...I...L..M.....-.-.-.......Q..S.PGD...........FS..E..YFQLMELRQRKGQLSEFIVKLSPVLMGL............GFKYLKCIKD......FDLA.KCGRER.......I.K..SGDRV..............FRW..D...C..NKAr..rYKP..........E.LQNYLDKEF....RDGMK.D.G.PLYFQT....IVLICQYYKEtt....lksDTLH.NEV....TTA.FSKLRTVE......ETTRN..PIAHNICN.MTEERLEADT.......K.....KQ......LLEP.L..NsagI..LRVLYK.VYKD....IY.K.KNMVW.TYDSLNNYIIE.................................
B9DUJ9_STRU0/3-253                   ........................dlen-------..------.---------------------.--------------------------.---.-..----------------....--------...-.------..-------.-.-.---------.----------TLHILLDVYAYNHAFRVAQS....IP...-Q.FPS..DAL........FLI.E...LLKERREL.Nl..dFlsqhaK.....EV......A..D.....I......E.S..Q.......Y...G........I..S...L...Q..V.....N.D.S.......I..E.EEQ...........LA..N..YIYDLEIKVKNGEIIDFVRSVSPILYRL............FLRLIRKQIP......-NFD.HYIRDA.......K.N..DQYDT..............WEF..D...R..MKE...aQHP..........I.FE-----SF....LGQRQ.S.R.NVTTRS....LADLLQLSQ-.........-LPE.N-V....KET.VRQLRQFE......KSVRN..PLAHLIKA.FDEEELHRTT.......Q.....FS......SLEF.L..N...K..IIELAT.YSGV....MY.Q.REPF-.YFDQINTVI--es...............................
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V2Y4F7_9FIRM/69-445                  ............................TEIAVIE..RPDLKD.VNDFDYFYKDFKEILDKYVKTlNEDDELLINISSGTPQMKSGLAVLQT.MLE.Y.sNCKLIQVSTPEKRSNE....-HYTSSDE...N.IEELWNiyIEYNGVE.S.F.ENRCKEVIF.PSLSTIKMEEIIKKHILAYDYAAALSIAEE....LP...KE.STE..SYI........HLL.R...YAKARLQL.N....E.....I.....DV......N..N.....I......K.S..A......nN...E........C..D...F...L..P.....V.K.K.......S..E.QRK...........IV..E..YTLALDVKRKREEYADFLRAITPLLVEL............FANILKNCFE......IDLN.PYTEIE.......K.G..EF---..............-RW..N...G..TKI....SE-..........D.IEQTLKDGNidlyKNSFK.-.P.SVTSFH....LYTIMKNLPK.........KNDNmRKA....FEI.IDILRAVE......QNIRN..KAAHQMVS.VTDAKIEKIT.......D.....MN......AEGI.M..K...K..IRELFT.YSDI....NIpK.QGGWN.SYELMNDSII-a................................
F9EMV9_FUSNU/1-116                   ...............mlkedlnrtylkd-------..------.---------------------.--------------------------.---.-..----------------....--------...-.------..-------.-.-.---------.------------------------------....--...--.---..---........---.-...--------.-....-.....-.....--......-..-.....-......-.-..-.......-...-........-..-...-...-..-.....-.-.-.......-..-.---...........--..-..----------------------------............----------......----.------.......-.-..-----..............---..-...-..---....---..........-.---------....-----.-.-.DVYISAq..vLSCTIRYYLE.........--KG.NK-....IMD.INYFNSFSktlvkmKNVRN..TLAHELKS.INKEDFNKES.......G.....TT......IDHI.N..R...K..ILEFFK.KYYSs..lGY.K.EEMVE.VYDNLNKEIN-k................................
A0A0A0DHN2_9STRE/101-349             ........................keap----VIQ..NEHVKEgIHEFDTMYKFVEEILN-R-ED.MSQGNYVLNVTSGTPQCQAAMYAINF.VKD.Y..DTRLARVNSPRSEKTN....QSNQGAPW...F.ETATFKyfLEKQASD.Y.K.DNRQLGIEKgKKFKNNLLQRTYKDFILKYEYKAALDILKAspdiIS...NK.QDQ..ENS.......kHIL.E...NMISVFQ-.K....Q.....G.....VL......E..E.....L......A.A..D.......A...D........L..K...C...G..E.....-.-.T.......D..E.FQK...........VL..N..YYLMIDILNRRGQVTDVLVKAKSFAEFI............LKSVIERRHP......----.------.......-.-..-----..............---..-...-..---....---..........-.---------....-----.-.-.------....----------.........----.---....---.--------......-----..--------.----------.......-.....--......----.-..-...-..------.----....--.-.-----.-----------dlevikkikrini....................
E4KQY9_9LACT/5-263                   ..................keenlglldy-------..------.---------------------.--------------------------.---.-..----------------....--------...-.------..-------.-.-.---------.--------------LLDQHDYAMLVKLLQK....--...EG.APA..SLQ........AFA.R...LGQALVQG.N....L.....P.....VI......D..K.....L......A.Q..E.......L...D........Q..D...Q...LlrP.....-.E.A.......L..E.QAT...........YA..A..YRA-LQIQLKRQEYGDYFRALTPILVNI............FRLIFEKRVM......PQLD.QFIEPI.......K.K..EDIDGrhly......rglqWKQ..S...R..VEA....SDN..........I.VNQTFHRYY....GDHFNyD.Q.YLSSSH....LLKLITDHS-.........--QD.KDL....VAK.ATRMRAVE......KYVRN..LSAHEVVF.VDQAWVKERG.......Q.....LS......LEEI.N..H...L..LGELMT.LADL....K-.D.QDQLN.ALSKINKEIK-q................................
H3NHN7_9LACT/10-263                  etrrillqqmldyqryqpfkqfirqhrr-------..------.---------------------.--------------------------.---.-..----------------....--------...-.------..-------.-.-.---------.------------------------------....--...-W.YSD..RLD........DLL.S...LAHAYVHT.D....L.....K.....SI......E..I.....L......A.P..K.......V...G........M..T...F...L..T.....R.P.S.......L..L.QRR...........VY..S..YTQGLAIKLEVHEYDDYLRALTPLLVDT............LRLVIETTLL......PDLD.RYLTEV.......V.K..ETVDGkpl........yrgLQW..N...Q..ALI...eEEP.........nP.IQETWKRYY....GDYFN.Y.ShYVSSSH....LLKIIDDHV-.........--ED.PTI....RQV.AGRMRKVE......KYARN..IVAHELVF.VDDHWLEYRL.......G.....MN......GQDI.H..Q...L..LMQLNQ.VAG-....--.-.-----.-----------ltdaqqwqglvki....................
R7NCI7_9FIRM/68-436                  ...........................f-DIKVIE..NEELID.VQKYDVYYEIFRQEIKNISDNlSSGDELIVNMASGTPAMKSALLILAT.LSE.Y..KFIPIQVNSPQKKMNS....EIEDRNNY...D.VELNWE..LNQDNLP.D.S.ENRCEEVKC.MNLIKLLKIDLIKKFIRKYDYSAAFELGKE....LK...DD.ISV..DAY........NML.G...IANNRLKL.N....Y.....K.....EI......S..K.....I......T.S..N.......N...K........Y..D...I...Y..P.....I.K.D.......A..G.NMK...........LF..E..YACVLEIKLKKEEYSDFIRGITPLIVDI............FEQILKTKMN......INVE.LLCDIR.......N.G..VK---..............-IW..N...I..GKL....KNN..........D.IFDILNNSYi..kKGGIK.E.G.PVYSHA....LAHIIRAKS-.........--ND.NIL....KSK.VDEIVNVE......QNIRN..LAAHQIVS.VTDKWFVDKS.......G.....KS......PEEI.M..N...I..IRYLLV.QAGV....GV.K.KEDWD.TYDVMNDKIV-r................................
A0A0D6XRH5_9STAP/68-417              ............................TEVEVIV..-DTIEH.PQDFDVYKEKFHEYIKSLGDE.YPEDEILLNVTSGTPQMEATLCLEYV.VYP.H..RKKCIQVSTPENWSNA....NLSHSTPKeelD.AV-NIE..TVNLNEE.A.H.EPRYKEIEI.ISFREAMVKSQILGLIANYDYEGALSLIQQ....QE...VF.KNK..DIL.......lELLtE...ITSSIKKH.S...vF.....K.....DI......S..E.....K......Y.S..N.......D...D........L..-...-...-..-.....-.-.-.......-..-.RKL...........LF..H..YLI-LKLKFDRGDIAEVLIRVKSIAEYI............AEYYINTKYP......-DVI.V-----.......-.-..-----..............YNY..D...R..PQL...nQKS..........S.FRVKYEVYL....NSINK.K.L.RKFDTL...gLPAYIDILAC.........IEGN.SSV....SNK.LNDVMKI-......NKHRN..SVAHKLDT.ININNNNQI-.......-.....-R......KA--.V..K...A..IEKLII.DIFK....EV.D.IRDFE.YVKQANDKIR-e................................
V4QWS1_STRIN/2-253                   ......................inhykt-------..------.---------------------.--------------------------.---.-..----------------....--------...-.------..-------.-.-.---------.-----------IGILLDVYAYNYAFKIASE....-W...ED.FPQ..QAL........YLL.E...LMKERREL.Nl..dFlfenqR.....MA......N..L.....I......E.N..E.......T...D........L..K...L...Y..L.....N.E.R.......I..E.EEQ...........IA..N..YILDLEIKIKNGDVIDFVRAVSPILYRL............FLRLIKSQIP......-NID.TYIIDA.......K.N..DQ--Y..............DTW..D...F..TKM....QEA..........D.IPLFK--DY....LSKRQ.S.R.NVTSKS....LADLLQLSQ-.........--LP.VDI....KEK.VNQLRVFE......KSVRN..PLAHLIKA.FDEEELFRTT.......H.....FS......SQAF.L..D...Q..IISLAL.YSGV....SY.Q.RQPF-.YCDQVNAVIM-s................................
#=GC SS_cons                         ..........................X--------..------.---------------------.--------------------------.---.-..----------------....--------...-.------..-------.-.-.---------.-------HHHHHHHHHHTT-HHHHHHHHHT....--...SS.S-H..HHH........HHH.H...HHHHHTTT.-T..HH.....H.....HH......T..H.....H......HHH..H.......H...H........H..H...HT--S..-.....-.S.-.......H..H.HHH...........HH..H..HHHHHHHHHHTT-HHHHHHHHHHHHHHH............HHHHHHCC-T......-TGG.GGEE--.......-.T..TS--E..............E-H..H...H..HTT...-S-H..........H.HHHHH----....-TT--.-.S.B--HHH....HHHHHCTSS-.........----.HHH....HHH.HHHHHHHH......HHTCC..CCCCS---.--HHHHHHHH.......S.....S-......HHHH.H..H...H..HHHHHH.HTT-....--.-.SSS--.HHHHHHHHHH-H................................
#=GC seq_cons                        ...........................................................................................................................................................................pptlpthlptYsYpuAhplhpp.....t...pt.hsp..phh........pLL.p...hstpRppL.s....h.....p.....ps......p..p.....h......h.t..p.......t...s........h..p...h...h..s.........s.......t..p.pcp...........lh..p..Yhhslpl+h+ptphsDFlRtloPllhcl............htpllcpphs.......plp.pah.tt.......c.p..pp..h...............ph..s...h..tch....pps..........p.h.phhpp.h....ttthp.p.t.slpspp....Lhtllphhp.............s.ppl....hph.lppl+phE......cslRN...hAHtIhs.ls--plpcpo.......t.....hs......spph.h..c...t..lhpLht.hshh.....h.p.pp.a...a-phNp.I..p................................
//
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