GenomeNet

Database: Pfam
Entry: Cas_Csm6
LinkDB: Cas_Csm6
Original site: Cas_Csm6 
#=GF ID   Cas_Csm6
#=GF AC   PF09659.8
#=GF DE   CRISPR-associated protein (Cas_Csm6)
#=GF AU   TIGRFAMs, Coggill P
#=GF SE   TIGRFAMs
#=GF GA   21.40 21.40;
#=GF TC   22.20 21.50;
#=GF NC   20.50 20.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR013489;
#=GF CC   Clusters of short DNA repeats with nonhomologous spacers, which
#=GF CC   are found at regular intervals in the genomes of
#=GF CC   phylogenetically distinct prokaryotic species, comprise a family
#=GF CC   with recognisable features. This family is known as CRISPR
#=GF CC   (short for Clustered, Regularly Interspaced Short Palindromic
#=GF CC   Repeats). A number of protein families appear only in
#=GF CC   association with these repeats and are designated Cas
#=GF CC   (CRISPR-Associated) proteins.
#=GF SQ   55
#=GS K9YLS8_CYASC/65-147       AC K9YLS8.1
#=GS D4CPB9_9FIRM/51-430       AC D4CPB9.1
#=GS C0ME47_STRS7/3-253        AC C0ME47.1
#=GS CSM6_MYCTU/62-407         AC P71635.5
#=GS Q5M4I1_STRT2/1-339        AC Q5M4I1.1
#=GS R7K0T6_9CLOT/71-437       AC R7K0T6.1
#=GS G9YKC4_9FIRM/63-439       AC G9YKC4.1
#=GS B9DUJ9_STRU0/3-253        AC B9DUJ9.1
#=GS D4S3I5_9FIRM/71-453       AC D4S3I5.1
#=GS E8LEC4_9FIRM/67-430       AC E8LEC4.1
#=GS R5DSI7_9FIRM/80-452       AC R5DSI7.1
#=GS D5X8I5_THEPJ/70-454       AC D5X8I5.1
#=GS E6MH22_9FIRM/72-463       AC E6MH22.1
#=GS G9PWQ3_9BACT/93-468       AC G9PWQ3.1
#=GS J4K7G4_9FIRM/72-461       AC J4K7G4.1
#=GS T1ZET2_STRIT/2-248        AC T1ZET2.1
#=GS G0VQ63_MEGEL/65-444       AC G0VQ63.1
#=GS G5K2N3_9STRE/1-242        AC G5K2N3.1
#=GS A8AXN3_STRGC/1-251        AC A8AXN3.1
#=GS K9T3T4_9CYAN/146-417      AC K9T3T4.1
#=GS G4D1Y7_9FIRM/68-440       AC G4D1Y7.1
#=GS R5DC62_9FIRM/69-435       AC R5DC62.1
#=GS Q9A080_STRP1/1-252        AC Q9A080.1
#=GS Q8DZD1_STRA5/4-252        AC Q8DZD1.1
#=GS U2J974_9STRE/1-252        AC U2J974.1
#=GS K1LDW6_9LACT/5-251        AC K1LDW6.1
#=GS Q5HK94_STAEQ/68-420       AC Q5HK94.1
#=GS A0YRM2_LYNSP/168-453      AC A0YRM2.1
#=GS E8JZ93_9STRE/64-425       AC E8JZ93.1
#=GS R7BKG5_9FIRM/71-442       AC R7BKG5.1
#=GS E2ZE75_9FIRM/63-439       AC E2ZE75.1
#=GS A9AZH4_HERA2/190-467      AC A9AZH4.1
#=GS K9ZAD1_CYAAP/145-427      AC K9ZAD1.1
#=GS G6EPC8_STRTR/1-260        AC G6EPC8.1
#=GS Q8DTU7_STRMU/1-251        AC Q8DTU7.1
#=GS Q8DTU7_STRMU/1-251        DR PDB; 4RGP A; 2-251;
#=GS Q8DTU7_STRMU/1-251        DR PDB; 4RGP B; 2-251;
#=GS G5KGL3_9STRE/2-255        AC G5KGL3.1
#=GS G5GF87_9FIRM/67-443       AC G5GF87.1
#=GS E8JZ92_9STRE/63-314       AC E8JZ92.1
#=GS R5EWA6_9FIRM/1-177        AC R5EWA6.1
#=GS Q0AW60_SYNWW/28-409       AC Q0AW60.1
#=GS K9SYD8_9SYNE/86-154       AC K9SYD8.1
#=GS S5QWN9_9STRE/3-252        AC S5QWN9.1
#=GS T0U3V7_9STRE/1-170        AC T0U3V7.1
#=GS K9SYD8_9SYNE/148-398      AC K9SYD8.1
#=GS K1MS93_9LACT/9-255        AC K1MS93.1
#=GS F9EMV9_FUSNU/1-116        AC F9EMV9.1
#=GS F9EMW0_FUSNU/66-317       AC F9EMW0.1
#=GS K9ZAD1_CYAAP/78-156       AC K9ZAD1.1
#=GS A0A0M2Q0C9_PROHO/141-418  AC A0A0M2Q0C9.1
#=GS E4KQY9_9LACT/5-263        AC E4KQY9.1
#=GS J4XM49_9ACTN/42-376       AC J4XM49.1
#=GS H3NHN7_9LACT/10-263       AC H3NHN7.1
#=GS G5KAJ7_9STRE/1-253        AC G5KAJ7.1
#=GS V4QWS1_STRIN/2-253        AC V4QWS1.1
#=GS E8JZ92_9STRE/306-383      AC E8JZ92.1
K9YLS8_CYASC/65-147                  ...........ipvrnelsddpvnltla-------..-------------IQEAKKALNIAHKLqQKGDTLA.FNASSGTPVMKSTWAILQS.AGY.A..PHSNVwQVRNPYQLKS-....---------------..-------.-.-.-------------------------------------------.---..---........----...--------.-..-.....-.....--......-.-.....-...-......-..-.......-...-........--...-...-..-.....--.-.......-..-.....---...........-...-..-..----------------------------............----------......----.------.......--..-----..............---..-..-..---....---..........-.---------........-----.-.-.------...----------.........-------....-----------......-----..--------.----------.......-.....--......----.--...-..------.----....-------------------nqerv...............................................................................................
D4CPB9_9FIRM/51-430                  ...........................i-EYELIR..RPELVEVQDFEIFYREFKEEIDKIRKEmGEDDELI.LNLSSGTPAMKSWLLVIRT.MNE.L..SCKAV.QVVTPDRAMNE....--HRHKDYQVKELWE..LDPDNEG.G.A.ENRCREVPCPSLSRVRQEVNIRKLIREYDYHAALELAAELK-D.HEK..PYM........KLIR...VAEERELL.D..M.....D.....AV......E.K.....K...L......E..T.......NhlkG........LY...R...L..P.....IR.K.......G..E.....KRD...........I...F..E..YALVMQIRLRRGEYADFIRAISPILYRL............YKRIMKK-LG......ICLE.EYVSGT.......ET..KTV--..............--W..D..R..EKLsgdmAGK..........E.ILKILEGAYk......sGDGFR.F.G.NVYPVH...MQKIIQAKS-.........--DDKEL....KKLVGELREAE......EKVRN..QAAHQIVS.VNKKTIREWM.......E.....KEgckdrdAEWI.MD...G..IKKAIG.YAEIi..dIANKEVWNSYDQMNEVIIR....................................................................................................
C0ME47_STRS7/3-253                   .........................dme-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.------------------HTISILLEVYAYSHAYKIARTLPDF.SPK..A-L........YLLE...LLKERREL.N..V.....A.....YAfqhraeN.R.....L...I......E..D......rH...Q........VK...L...L..L.....NE.A.......Q..E.....EEQ...........I...A..N..YLLDLAAKVKNGEIIDFVRSVSPVLYRL............FLRLLEQAIP......-DVQ.SYIIDT.......KN..DQYDT.............wNFK..A..M..EKA....DNA..........L.FRSYLAQRQ........PRHVT.T.R.SL--AD...LLVLSEL---.........---PADI....KKLVVVLRQFE......KSVRN..PLAHLIKP.FDEEELYRTT.......H.....FS......SQAF.LD...G..LISLAV.FSGV....NYIKEPF-YFDVVNAVIA-k...................................................................................................
CSM6_MYCTU/62-407                    ............................TDVRIVT..-YTNPSVHRFDLFVPVFRNHLVELSAE.FPDRTIL.LNTSSGTPAMQAALVAINV.FGI.P..RTTAV.QVSTPARALSKp..gDRESPDAYDLELMWD..ANDDNQP.G.A.PNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAAD--SR.LPD..QVS........NLIR...GAMHRSRL.E..H.....L.....VA......P.K.....F...F......K..D.......T...A........FT...Y...D..P.....--.-.......-..-.....ANK...........V...A..E..YISALALLAKREQWAEFARSATPAITIV............LRAAVAKHLP......----.-----E.......DR..YLDDM..............GRV..D..R..RKL...eREP..........E.IRCALKHPP........KSPNA.E.W.YLYTKD...WLALLRQFA-.........--PDR--....VGALEVLGRFE......SRVRN..TAAHEIVS.ISEDRITKDG.......G.....LL......PEQL.LK...I..LA----.----....RETGADLTLYDRLNDEIIR....................................................................................................
Q5M4I1_STRT2/1-339                   ............................-------..---------------------------.-------.MNLSSATPQIKSALFVINR.LNG.I..NVKAV.KVSSPEHASNE....NIGHDNDENIDELIK..VNEDNKV.N.F.IDRTIEDNAEKFSQALLKKTARDFIEKFDYKAALDILDQLSDF.PNL..KSLreeirdvvNCLSkkkIAYIREKLyD..F.....S.....RV......F.K.....N..qS......I..L.......S...D........IL...S...F..P.....LD.D.......S..Q.....-KK...........A...L..N..YYLMIDVLKEREHIADVLIKAKSLAEFV............IEEIIKKDHE......GLIV.FDGNLP.......KL..NPS-F..............--P..D..C..EAI....LDD..........-.IDKKMKKSRg.....ieDTEER.I.F.SVQSTL..nLLSYLNILEF.........YEYDSQL....QTAINGILSL-......NGERN..KVAHGLSE.IDTR---LLS.......R.....KK......LKQL.SE...N..LR-LLL.VDCL....GIDSSYFNYYDKQNKEL--tk..................................................................................................
R7K0T6_9CLOT/71-437                  ............................YEIEIVE..RRELTKVHEFDYFYQDFRNIIQNIYNDmNKDDTLL.LNVSSGTPAMKSGLLVLQT.LGE.F..PAKLI.QVVTPERKINE....--HIHRDYDVQTLWE..LDEDNNE.N.Y.ENRCGEIECPSLSSIKKEEMIKKHVEVYDYQAALDVADTLSVQ.ETV..AYW........DLLE...LASRRILL.D..F.....S.....GV......D.K.....L...A......V..K.......S...G........VQ...C...L..P.....IR.A.......S..S.....ERK...........Y...F..E..YALSVGIKLKKEEYADFVRAITPLIVDL............FEMILKKQCG......VDVN.AYCDVS.......ER..NQV--..............RRW..S..R..KKL....AGT..........Q.VGEILEKEY........KERFQ.Y.K.DVYSVH...LKLLIENIS-.........--TDTEL....IQLINNVRSVE......EGVRN..LAAHQIIS.VTDETIRQRT.......G.....FT......TTQI.MD...M..IKRLFS.YTGI....SVKKDYWDSYDQMNDLIIE....................................................................................................
G9YKC4_9FIRM/63-439                  ...........................c-EIEFIK..-SGITEPQNYEKLLY-LQEKFDELFGK.FPNVKWV.LNISSGTPQMKTIMSFLSV.DYP.-..SCTAV.QVSNPHVDRDK....VAEHCEKEEYVQMLE..CNEDDNP.N.S.RKRCTEPPLLMVRRHGIRLQIESLVRNYEYGGALQLVEQNRRL.FSD..TTE........KLLR...HSVCRTML.N..W.....R.....EA......N.K.....I...I......S..E.......Y...K........GK...I...L..M.....--.-.......Q..S.....PGD...........F...S..E..YFQLMELRQRKGQLSEFIVKLSPVLMGL............GFKYLKCIKD......FDLA.KCGRER.......IK..SGDRV..............FRW..D..C..NKAr..rYKP..........E.LQNYLDKEF........RDGMK.D.G.PLYFQT...IVLICQYYKEtt....lksDTLHNEV....TTAFSKLRTVE......ETTRN..PIAHNICN.MTEERLEADT.......K.....KQ......LLEP.LNsagI..LRVLYK.VYKD....IYKKNMVWTYDSLNNYIIE....................................................................................................
B9DUJ9_STRU0/3-253                   ........................dlen-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.-------------------TLHILLDVYAYNHAFRVAQSIP-Q.FPS..DAL........FLIE...LLKERREL.NldFlsqhaK.....EV......A.D.....I...E......S..Q.......Y...G........IS...L...Q..V.....ND.S.......I..E.....EEQ...........L...A..N..YIYDLEIKVKNGEIIDFVRSVSPILYRL............FLRLIRKQIP......-NFD.HYIRDA.......KN..DQYDT..............WEF..D..R..MKE...aQHP..........I.FE-----SF........LGQRQ.S.R.NVTTRS...LADLLQLSQ-.........-LPEN-V....KETVRQLRQFE......KSVRN..PLAHLIKA.FDEEELHRTT.......Q.....FS......SLEF.LN...K..IIELAT.YSGV....MYQREPF-YFDQINTVI--es..................................................................................................
D4S3I5_9FIRM/71-453                  ........................idpp----IFT..--DIVDASRYEEFSQILPQTVQDLLQK.YPEHEIL.LNLSSGTPQIKTILAMLA-.ADN.E..RCIGI.QTVTPERRANN....-PQKITPEELQSMLQ..MNEDNKP.G.A.VRRCDEPPLKIFRYHAEKNRILALIHSYEYNAALTLARN-SRL.VPT..DAK........TLLK...HAAARTML.L..P.....D.....KA......R.K.....I...L......P..E.......Y...N........GQ...K...L..F.....LF.K.......E..D.....EER...........I...V..E..YFLVMQIDQENERLSNFMLRITPFLYEF............LHDYVAKNVKggrknaQHID.NLCIKK.......YN..TDGYI..............LQR..K..K..IEK....NAR..........N.FLDLLDQEF........AGSNA.H.Q.YTNTDL..sFLLLIHYCTYmq....eagLAKDAQLhsdmMDELGKLGTV-......RKVRN..SVAHVIVN.VTRESFQKDT.......Q.....MT......PPAL.MD...T..FAKMLT.LVYG....TKVKEARTTYSRINNW---lee.................................................................................................
E8LEC4_9FIRM/67-430                  .....fiytdivnvqlmeelvplaegfl-------..----------------------ELRKE.FPEEEIL.LNLSSGTPQMKTVMSFLAT.-DF.E..NVRAI.QVDSPQRASNR...tAHATQDNEDINVVIE..NNFDNVP.D.Y.TCRCHEAPLSLLRRYSIRHQLISLINNYEYRAALTMYNKNKIM.FVE..ETG........NLLR...HADLRSKL.L..I.....N.....EA......F.K.....G...M......G..K.......E...N........I-...-...-..-.....YN.N.......N..S.....VKK...........L...N..E..FLMVMELHQRKGELAEFIPKLTPFLYEL............LLYYFENHVA......LKLE.RFCYRK.......RN..NNSSW.............kISA..E..K..LRK....EAP..........D.VFTYLNYYF........RQGFR.D.T.DLSFSN...MLLILESLK-.........-SVKTEL....MGELQILREVE......KNQRN..KIAHTILTdVTEENLQAIE......pK.....LS......SYQI.IQ...H..LRKAFL.LIME....GESICKRNVYDDLNRRIV-d...................................................................................................
R5DSI7_9FIRM/80-452                  ...........................f-NIHVIE..YRDLTDVNMFDPVYECIAKDIESIRNNlNEDDILY.VNVSSGTPAMKYCLQIISA.VSD.F..NIIPI.IVSTPTKKMNK....HEEDKENYDFKDYWE..LNEDNDEnE.F.ENRAKETTSSVFYALLNKITIKKFILNYNYSAALEIIGILKTN.LYN..NAI........PLIE...AAQARVQR.N..I.....K.....KS......Y.K.....T...L......T..D.......A...G........F-...R...Y..P.....FElT.......D..N.....RFK...........V...F..E..YALEIGIKLKHHEYNDFVRSLTPLMTDL............YIRTLEKKCS......IKLE.DYIVSN.......NK..NTTK-..............MIW..D..D..TKI....CGT..........D.MQESLNNKY........-GKFH.G.G.IVYNTH...LVAIIKDYIYk.......nHMEKEKF....SECISMLSNVE......EELRN..PAAHTMVA.FDKEKIKKIT.......G.....NY......PEEI.YN...T..IMNLMA.DLNI...pVIKR---NSYDEMNLILI-d...................................................................................................
D5X8I5_THEPJ/70-454                  ........................dkhl----IFS..--GIQNPHDFDAFIGVFSKHLEEISKD.HPEATIL.LNVSSGTPQMMSMLCLETV.VSS.K..RLVPV.QVITPAARANL....SKMGGPDYDVEWEFG..NNLDNEP.D.A.PNRCVQPDIQSFKRALARGQVTALLENYNYEGAALILGGYGLG.TDS..TVM........GLLR...FAIALKNL.D.sD.....A.....KG......S.Q.....F...Q......E..A.......R...A........LT...G...Y..P.....QM.D.......W..E.....CLE...........I...C..E..YCNVVKLLQRTGQLADFLLRLNPLVTELqtkflkyclgfaVEAI------......--IEeRHCAGR.......KN..TAGKFte..........rlVRR..D..K..IRA....LNP..........E.LLAYLDECH........NGEYR.D.G.SHVNIR..mQNCLINFFLR.........KNPDSQT....RSFAGFLDTMEi....lNRDRN..LAAHNLYG.VLEEDIKQRS.......G.....LT......GGQI.VD...K..LENLIK.FIFK...gRCKPEIFTIFDTVNNVI--ng..................................................................................................
E6MH22_9FIRM/72-463                  ...........................p-EIEIIE..RPELRNVQYFDIFFDEFWEKISQITDEmAEDDELL.LNVSSGTPAMKSGLEVLQT.IRG.FsrKTRLI.QVDTPTKKMNE....--HAHEGFDVELAWE..VDVDNAP.D.F.KNRCHEFECRSLKNIQDEEIIKQLVKDYDYRAAMAVAKDM-PE.PDP..AYL........DKLK...LARARQLL.D..F.....S.....TV......T.K.....L...E......K..K.......T...G........MD...V...T..P.....VK.S.......G..D.....ARK...........S...F..E..YALLLWIKKDRREYVDFCRALTPLIVDL............FEQILRCQCK......IDIN.QYVYGDfpgwvrrKC..EEEGWneeerekrfrgakiCKW..H..K..GRL...kQDE..........K.IFSVFQKAY........SSGVA.N.R.NISSDH...LLKLIEEFC-.........--KNRAI....RDAAKQIREVE......EAIRN..DSAHEMVS.VTEDVIEHRT.......G.....LT......TDEI.LK...L..IKRLFG.YTGY....GIKEADWHSYQAMNQEIV-q...................................................................................................
G9PWQ3_9BACT/93-468                  ...........................f-DVEVQK..CADITEVHKFDLFYEEFEKRLKKISDE.NPESEIL.VNISSGTPAMKSALQFIAA.LGSvE..RLTAI.QVATPEKKCNK....HRAPAVNYDLETEWA..CDEDNET.EtF.EDRSEVSGSLNLAARIKRETLIKHVEAYDYHAALSIAVGLGDK.IPP..LAL........KLLD...AAAARAQL.N..L.....N.....RI......Q.I.....S...L......K..E.......T...G........VK...I...I..P.....VE.S.......S..D.....LRN...........I...A..E..YLLWLDVKLKRGELADFIRGLTPLIADL............FEYYISKVLK......IDIR.KYCDSS.......GE..YSLKL..............KRY..K..L..ERT...sEGM..........K.ILEMLDAQF........-NCYK.D.D.YLSSKN...MLCILKAFC-.........--ADKMA....AELFENIRNVE......SAVRN..IAAHEIIA.ITPELIEKKT.......RengcaSA......PAGI.LN...M..LFKAAE.LYGI....-PQGKIKNSYGEMNELIK-e...................................................................................................
J4K7G4_9FIRM/72-461                  ...........................i-EYEIIE..RPELADVHEYNFYYDEFREILKDIIKSmEKDDKLL.LNISSGTPAMKSGLLVLNH.LWE.D..KCESI.QVSTPQKSMNN....---KEKDYDVETIWQ..LNEDNEE.N.F.ENRCSEVQCTSLTRIKNEELIKKLIDEYDYDAAYTLATYEDMKnSSK..HYI........DYIE...IAKYRLLL.D..I.....N.....SV......D.K.....I...I......N..R.......L...G........IKeksY...C..P.....IK.S.......S..D.....ERK...........Y...F..E..YVLSLDIKVKKEQFGDFIRAISPIIEDI............FEKIVEKQVG......INVKqDLCDKQ.......KN..NEELI..............FKW..S..E..KKL....KTSakdgkaniirE.IDKILNEN-........NINFR.YgG.YVYSSQ...LVPIILTMV-.........--KDSNV....RNIVENLRNVE......QSVRN..ITAHEIVS.VTEDFIQKKTksskkpgG.....YT......SRQI.IE...D..IKKALA.YAGI....NISNEDYNSYKLMNEDIK-s...................................................................................................
T1ZET2_STRIT/2-248                   .......................vgnld-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.----------------LKEEIVYAISRYDYAHAYKLAKRLD-N.VEA..KLV........EVLY...IMAERREL.N.iH.....P.....AM......EcQ.....L...E......I..R.......N...D........FQ...L...F..C.....HE.S.......E..E.....DEQ...........L...A..N..YLYDLEAKLKNEQVIDFIRAVSPAIYRI............FMRLVKLEIP......-DIE.SYIHNS.......RE..AS--Y..............DRWnfD..R..MKN....IGH..........P.ILSTFH---........----A.E.S.TVHSSS...LASLILLLD-.........--LSEQV....KIMVKELRKLE......KSVRN..PLAHLIKH.FDEEELYSTT.......G.....FS......SQFF.ME...I..LILLAQ.ATGI....TYDKEQF-YFDRVNQVIK-t...................................................................................................
G0VQ63_MEGEL/65-444                  .......................vesly-------..-SGIVDAHLYDAYLHDLPGHVLKLHQI.YPEAEIL.LNLSSGTPQIKVVLAIMST.EYA.-..WCRGI.QVASPEHRSNT...nNIPVQDEEDVEEMLA..CNEDDEP.D.A.PNRCEEPHLEILRFYREKYEIMSLVNQYEYMGAWAFCKG-SHT.ISA..QTK........KLIQ...FAMYRSDL.Q..T.....K.....AA......Q.Q.....I...M......R..K.......Y..hG........QA...L...F..P.....-F.E.......R..E.....GES...........L...T..E..YLLTMQIHKEKKQYASFMVQISPFLYEL............FVTYAKMNLK......IPLL.NY--RE.......KV..AGRRI..............LRR..Q..TllQKP....QGP..........E.LIAYLDHVW........PQPFY.D.S.ELSFILlyqVFCFAEQFDGakdaekhheFMTDPLM....NSANPYMDKL-......RKLRN..NTAHEIIN.VTEETIQKRT.......G.....LT......PDDI.MT...S..FWNLLS.IIYG....SPVNRQRMAYKRLNQWI--ge..................................................................................................
G5K2N3_9STRE/1-242                   ...........................m-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.-------------------------DVYAYNHAYKIAKSLPEF.-PN..KAL........YLIE...LLKERREL.N..V.....SylfqhNT......Q.N.....K...A......I..E.......E...A........YD...I...N..L.....IM.N.......AnpE.....EEQ...........I...A..N..YILDLEVKAKNGDIIDFVRSVSPILYRL............FLRLMEKEVP......-QFK.SYIFDA.......KN..DQ--Y..............DTW..N..F..QAM....LDS..........N.-LEVFKTYL........-SQRQ.S.R.NVTTRSl.aDLLVLSNL--.........---SEEI....KTLVVTLRKFE......KSVRN..PSAHLIKP.FDEEELHRTT.......H.....FS......SQVF.LE...G..IIRLAT.FSGV....SYQREPF-YFDQVNAII--ek..................................................................................................
A8AXN3_STRGC/1-251                   ........................mkvd-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.----------------AKEAILFAISRYDYAYALKLAERAGKS.TQS..DLF........RLLR...ALAERREL.N..I.....Q.....SI......M.N.....L...KleitgmN..P.......A...D........FQ...L...F..C.....HE.N.......E..A.....DEQ...........L...A..N..YLYDLDAKLRNEQLIDFVRAVSPAIYRV............FMRLIRMQLP......-DID.SYIHNS.......RE..AS--Y..............DRW..K..F..EKM....RNS..........D.HP-VLQNFH........----T.E.S.TVNSSS...LTELILQLN-.........-FPES-V....KESAGQLRELE......KSVRN..PLAHLIKP.FDEEELHRTT.......G.....FS......SQHF.ME...L..LVDLAQ.ETGI....VYQREPF-YFDRANAI---ves.................................................................................................
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T0U3V7_9STRE/1-170                   ............................-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.-------------------------------------------.---..---........----...--------.-..-.....-.....--......-.-.....-...-......-..-.......-...-........--...-...-..-.....--.-.......-..-.....---...........M...A..N..YLYDLEAKLRNEQIIDFVRAVSPAIYRI............FMRLIQLKIP......-DIT.NYIHNS.......KE..SS--Y..............DRW..K..F..GSL....HAS..........D.N-PILQ---........--QFH.S.E.SVVNSS..sLTELIVQLD-.........-LPDS-V....KVAAQQLRELE......KSVRN..PLAHLIKP.FDEEELHRTT.......G.....FS......SQDF.MK...N..LIDLAS.YTGI....HYDQANF-YFDQANAVM--ek..................................................................................................
K9SYD8_9SYNE/148-398                 ........................emke-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.G.QERIFETNVTVLRREFDRRVIVKQLEDYNYGGALRSLKISCLN.-CD..DAI........LLLE...YGRCRMAF.D..F.....N.....RA......F.S.....N...I......K..L.......V...K........ID...I...N..P.....QL.L.......Q..EiaalrQRK...........LdaiC..KelYFN-ALVRYKNLEFSEFLVLISQFQECF............LALLLVKKLR......ISVP.----NN.......LQ..EA---..............---..-..-..---....---..........-.---------........-----.-.-.------...----------.........-------....-----------......-----..--------.----------.......-.....--......----.--...-..------.----....-------------------vdfwhkvkmvdggkpyqellkdyrvkgwdltpegypnrfhligildyyaelknvlihikklneyceqrnrrvhrfegvsvidngvgviaimkklvklltl
K1MS93_9LACT/9-255                   ............ehhvfaaltehmiehr-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.----------------------------QYSILQETLHQADAK.KWQ..KQI........TLTQ...LAQAYLTN.D..L.....E.....SI......R.E.....L...A......VvlE.......R...N........YL...L...A..P.....--.S.......Q..L.....ELR...........I...Y..S..YIHHMNQLYERQAWTDYFRAISPVMVDL............FALLIERHAI......PELS.HYMEPV.......IKptDDGRQiyk........glhWIQ..E..K..IEA....DDN..........V.IRKTWQNYY........GDYFN.Y.G.HYVSSS..hLIKLMQDTM-.........---DPSF....VTPAQTLRRIE......KDIRN..IVAHEAIY.LSPERIYHRS.......L.....MT......AEEI.HQ...L..LHHLCQ.----....-------------------qaqlndpr............................................................................................
F9EMV9_FUSNU/1-116                   ...............mlkedlnrtylkd-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.-------------------------------------------.---..---........----...--------.-..-.....-.....--......-.-.....-...-......-..-.......-...-........--...-...-..-.....--.-.......-..-.....---...........-...-..-..----------------------------............----------......----.------.......--..-----..............---..-..-..---....---..........-.---------........-----.-.-.DVYISAq.vLSCTIRYYLE.........--KGNK-....IMDINYFNSFSktlvkmKNVRN..TLAHELKS.INKEDFNKES.......G.....TT......IDHI.NR...K..ILEFFK.KYYSs..lGYKEEMVEVYDNLNKEIN-k...................................................................................................
F9EMW0_FUSNU/66-317                  ..........................yn--PEIIK.iKTGIKDAHHFDAYFEVIYNVFEEIKKE.NEGAEIY.VNITSGTAQMISNLISYYIdATN.I..NIIPI.QVETYTGQSNAssedNKTVDKYYDVEVEAI..YNLDNDK.N.TrTHRIVTPDLRKYSRILTKNQIQKLLEQYKYEAISELLKRNIFD.KNL..ELN........TLVN...FAIERTNL.K..G.....L.....EC......N.K.....KlypF......N..N.......K...D........YD...R...L..Yy...fTK.Dkni.trvS..D.....WYQ...........I...V..D..YFALANIKQKTEDISTYTLMLEPIIVRI............YLSILKDL--......----.------.......--..-----..............---..-..-..---....---..........-.---------........-----.-.-.------...----------.........-------....-----------......-----..--------.----------.......-.....--......----.--...-..------.----....-------------------mkki................................................................................................
K9ZAD1_CYAAP/78-156                  .............iqvqeklstdpvnls-------..-----------LVIEEVKTQIKKIQEI.QKGDDILeLNSSSGTPTMKASLGVLQG.AGY.L..PKSNIwQVRNPRE----....---------------..-------.-.-.-------------------------------------------.---..---........----...--------.-..-.....-.....--......-.-.....-...-......-..-.......-...-........--...-...-..-.....--.-.......-..-.....---...........-...-..-..----------------------------............----------......----.------.......--..-----..............---..-..-..---....---..........-.---------........-----.-.-.------...----------.........-------....-----------......-----..--------.----------.......-.....--......----.--...-..------.----....-------------------mreg................................................................................................
A0A0M2Q0C9_PROHO/141-418             ..............riwqvrhpkemqpd-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.QERVFTTDVTTLKDEFDRKVIAQQVQDYNYSGAAITLKESKLA.CPV..TV-........ALLE...YGYHRRAL.N..F.....D.....RA......F.S.....V...I......D..S.......L...RkqidpcwiSE...I...T..P.....LR.Q.......K..N.....SQA...........L...L..KeaYFNA-LLRLKTQQYADFLVSLFRLQEQL............LYYLVQEKIG......LDVSgKFLDKA.......RS..IEV-I..............KQV..D..E..GKL....---..........-.-YQFLQNYTlp....rgGTLDM.N.R.GISRYV...FQAIVEYYP-.........--KFETL....VPLIQNLNYY-......CDLRN..DSVHGFVG.VSEIEDEPTL.......L.....NT......LRQI.MK...Q..VTPL--.----....-------------------pdcnpfdrlnqdildsl...................................................................................
E4KQY9_9LACT/5-263                   ..................keenlglldy-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.-----------------------LLDQHDYAMLVKLLQK--EG.APA..SLQ........AFAR...LGQALVQG.N..L.....P.....VI......D.K.....L...A......Q..E.......L...D........QD...Q...LlrP.....-E.A.......L..E.....QAT...........Y...A..A..YRA-LQIQLKRQEYGDYFRALTPILVNI............FRLIFEKRVM......PQLD.QFIEPI.......KK..EDIDGrhly......rglqWKQ..S..R..VEA....SDN..........I.VNQTFHRYY........GDHFNyD.Q.YLSSSH...LLKLITDHS-.........--QDKDL....VAKATRMRAVE......KYVRN..LSAHEVVF.VDQAWVKERG.......Q.....LS......LEEI.NH...L..LGELMT.LADL....K-DQDQLNALSKINKEIK-q...................................................................................................
J4XM49_9ACTN/42-376                  ..........................kv---ELVA..-SPYSQVHRFDHYIVEFEELLKRLPKS.EMNVGIL.VNVSSGSPAMEQALVALGA.FGQ.L..NLELI.QVPTPRKGENDk..nDRENPDAYDLDVLWA..LNPDNER.-.M.ECRAESIELPNFKERLLKDNIATLIDVYDYDAAASLACK-SST.LSQ..SAM........NGIK...AAANRLRL.S..R.....G.....S-......-.-.....-...-......-..-.......-...-........--...-...-..-.....--.-.......-..A.....DNS...........V...S..E..FLSVMEVRLRQGNYGDFARMVTPAFTHV............MRSVLHGVLP......--EK.RY--LK.......RK..RDGSF.............gDRL..D..E..ASI....RED..........Q.KLSGVFGRL........SSNGI.P.R.YLTNEC...LSALVEEYC-.........--EDVEV....KSLVSKLRCFE......KKVRN..GLAHEIQE.VRRERIEKEG.......G.....MP......LQEV.LD...S..LMKL--.----....-------------------agsrsgyyddlnk.......................................................................................
H3NHN7_9LACT/10-263                  etrrillqqmldyqryqpfkqfirqhrr-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.------------------------------------------W.YSD..RLD........DLLS...LAHAYVHT.D..L.....K.....SI......E.I.....L...A......P..K.......V...G........MT...F...L..T.....RP.S.......L..L.....QRR...........V...Y..S..YTQGLAIKLEVHEYDDYLRALTPLLVDT............LRLVIETTLL......PDLD.RYLTEV.......VK..ETVDGkpl........yrgLQW..N..Q..ALI...eEEP.........nP.IQETWKRYY........GDYFN.Y.ShYVSSSH...LLKIIDDHV-.........--EDPTI....RQVAGRMRKVE......KYARN..IVAHELVF.VDDHWLEYRL.......G.....MN......GQDI.HQ...L..LMQLNQ.VAG-....-------------------ltdaqqwqglvki.......................................................................................
G5KAJ7_9STRE/1-253                   ........................miel-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.-----------------KKTIDILLDVYAYNHAFKIAKEIPSI.NPD..S-F........FLLE...LLKERREL.NlsFmianqA.....RL......K.D.....L...Q......A..K.......H...Q........VT...F...L..M.....NE.D.......L..E.....KEQ...........I...A..N..YILDLEVKVKNGDIIDFVRAVSPILYRL............FLTLIQKEIP......-HFD.TFIHDS.......KN..DQ--Y..............DTW..D..F..QKM....QEA..........-.NLPIFQAYL........SQRQS.R.N.VTSRSL...TDLLILSDL-.........--PHE-I....KETIKSLRQFE......KSVRN..PLAHLIKA.FDEEELYRTT.......K.....FS......SQVF.LE...K..IIELAT.YSGV....SYQREPF-YFDQINALI--ek..................................................................................................
V4QWS1_STRIN/2-253                   ......................inhykt-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.--------------------IGILLDVYAYNYAFKIASE-WED.FPQ..QAL........YLLE...LMKERREL.NldFlfenqR.....MA......N.L.....I...E......N..E.......T...D........LK...L...Y..L.....NE.R.......I..E.....EEQ...........I...A..N..YILDLEIKIKNGDVIDFVRAVSPILYRL............FLRLIKSQIP......-NID.TYIIDA.......KN..DQ--Y..............DTW..D..F..TKM....QEA..........D.IPLFK--DY........LSKRQ.S.R.NVTSKS...LADLLQLSQ-.........--LPVDI....KEKVNQLRVFE......KSVRN..PLAHLIKA.FDEEELFRTT.......H.....FS......SQAF.LD...Q..IISLAL.YSGV....SYQRQPF-YCDQVNAVIM-s...................................................................................................
E8JZ92_9STRE/306-383                 .....................gkilqek-------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.-------------------------------------------.---..---........----...--------.-..-.....-.....--......-.-.....-...-......-..-.......-...-........--...-...-..-.....--.-.......-..-.....---...........-...-..-..----------------------------............----------......----.------.......--..-----..............---..-..-..---....---..........-.---------........-----.-.-.------...----------.........--REWTL....HNKIKPILRM-......NKTRN..TIAHKLDS.LDSEELKQLG.......P.....--......---V.LK...A..LKGLIK.EQY-....QLTEKDFNFYKDFNKELL-e...................................................................................................
#=GC SS_cons                         ..........................X--------..---------------------------.-------.-------------------.---.-..-----.-----------....---------------..-------.-.-.----------------HHHHHHHHHHTT-HHHHHHHHHT--SS.S-H..HHH........HHHH...HHHHHTTT.-THH.....H.....HH......T.H.....H...H.....HH..H.......H...H........HH...HT--S..-.....-S.-.......H..H.....HHH...........H...H..H..HHHHHHHHHHTT-HHHHHHHHHHHHHHH............HHHHHHCC-T......-TGG.GGEE--.......-T..TS--E..............E-H..H..H..HTT...-S-H..........H.HHHHH----........-TT--.-.S.B--HHH...HHHHHCTSS-.........----HHH....HHHHHHHHHHH......HHTCC..CCCCS---.--HHHHHHHH.......S.....S-......HHHH.HH...H..HHHHHH.HTT-....---SSS--HHHHHHHHHH-H...................................................................................................
#=GC seq_cons                        ...........................h..............................................................................................................................................lh.hlptYsYpsAhplhpp.t...hst..phh........tLLc...hsttRppL.s..h.....p.....ps......p.p.....h...h......t..p.......h...s........hp...h...h...........p..........p.....ppp...........l...h..p..Yhhslpl+h+ptphsDFlhtloPllhcl............hhhllcpph........plp.pah.ps.......cp..pp..h...............ph..p..h..tch....pps..........t.h.phhpt.h.........pthp.t.t.tl.spp...Lhtllphhp.............sppl....hphlptl+phE......cslRN...hAHtlhs.hs--plppps.......t.....hs......spth.hc...t..lhpLht.h.h......hppp.h..acphNt.l..p...................................................................................................
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