GenomeNet

Database: Pfam
Entry: Cas_Csx9
LinkDB: Cas_Csx9
Original site: Cas_Csx9 
#=GF ID   Cas_Csx9
#=GF AC   PF09658.9
#=GF DE   CRISPR-associated protein (Cas_Csx9)
#=GF AU   TIGRFAMs, Coggill P
#=GF SE   TIGRFAMs
#=GF GA   25.00 25.00;
#=GF TC   541.30 541.20;
#=GF NC   20.20 19.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR013488;
#=GF CC   Clusters of short DNA repeats with nonhomologous spacers, which
#=GF CC   are found at regular intervals in the genomes of
#=GF CC   phylogenetically distinct prokaryotic species, comprise a family
#=GF CC   with recognisable features. This family is known as CRISPR
#=GF CC   (short for Clustered, Regularly Interspaced Short Palindromic
#=GF CC   Repeats). A number of protein families appear only in
#=GF CC   association with these repeats and are designated Cas
#=GF CC   (CRISPR-Associated) proteins. This entry describes archaeal
#=GF CC   proteins encoded in cas gene regions.
#=GF SQ   4
#=GS H3ZK36_THELN/23-399  AC H3ZK36.1
#=GS Q5JGB3_THEKO/23-399  AC Q5JGB3.1
#=GS Q9UZX2_PYRAB/23-393  AC Q9UZX2.1
#=GS F8AED3_PYRYC/23-397  AC F8AED3.1
H3ZK36_THELN/23-399             .MSWVVMDAGIEPDEEELADALEGALKSLGSRMKAHTSKMGRNDRSSFDKVLNAWFGRSAPETYGELFELVVTETIKLLRDGDIDPSESLSSIKIDKNGTYLGVTYNGEQAILPAIIKQPEYYERQSGFLSPTTGQKAQIRMDPLWFSFTALGFFTGFAGFIGGKYYLMTKPGIEGFWPYEVEDVIRNGLLQLTGAGASGRISLSTEELYEMKLAMKLAEEGRNVVEEVYPVTLHLISLERQVYTELKTTQLNLAGLSEYMTKYMRKIEAISIGGLPLLVELKEGNATVQKYPLWALLDVAEKELWKGVNGDGEMLAYIFVKDLYRAINSGRRELIRDAVFRLFRQGRALLEGSSRASGEFRKVMKTFMWQEHLGVLL
Q5JGB3_THEKO/23-399             .MSWVVMDAGIEPDEEELADTLEGALKSLGSRVKIHTSKMGRNDRSSFDKVLKAWFGRSAPETYGELFELVVTETIKLLRDGNIDPGESLSTIKTDKNGTYLGIAYNGEQAILPAIIKQPEYYERQSGFLSPTTGQKAQIRMDPLWFSFMALGFFTSFAGFIGGKYYLMTKPGIEVFWPYEVEEIIEKGILPLTGAGASGRISLSTEELYEMKLAMKLAEEGRDVIEEVYPVTLHLISLEGQVYTELKTTQLNLTGLSEYMEEYVNRIESASMGGLPILVELKAGNATIQKYPLWALVDIAERELWKGVNGDGEMLAYIFVKDLYRAINSGRRELIRDAVFRLFRQGRALLEGSGRASGEFRKVMKTFMWQEHLEVLL
Q9UZX2_PYRAB/23-393             f-SWIVMDAGLSPNPNDFADAIENSMDTLKKRAMMNSSRIGKNDRNSYDRVFSKWFGVKAPDTYMELFELVINETIKLLRSGKIDPAKSLQSITRNKNGTYLGQAYNGEYAITPAVIKQPEYYEFQSEFLKPTAGQKAQIYLDPLWFSLLSMGFLTAFAGYIRKRYYLMTKPGIEVYFP-DVEEILIDGIIALTDAGISSRARLDAEELYELRIVMKLAEEGRKVPEMTYPIALH-ISLEGQVYTELKTLQLDLKELSNYLATYVKKIENYRVMGVDLKVKLKEGE----KYPLWALVDIAEKELNKGVSGDRELLAYIFVKDLYRAVNSGRKELIEDSIFRLFRQGRGLLEGEGRASGELRKVLRVFMQEDHLEVLI
F8AED3_PYRYC/23-397             .LSWVVIDAGLSPNADDFADALENSMDTLEKRARMNSSRMSRNDRSSYNKLLSAWYGVKAPDTYTELFELAIREAVKLLRSGKLDPAKSLGSIKWDKNGTYLGQPYNGQYAISPAVVKQPEYYEFQSDFLKPTAGQKAQIYLDPLWLAILSTGFLTAFAGFIDGRYYLMTKPGIEAYFP-DIEDILD-SLLILTNAGIESRARLETEELYELKITMKLAEEKMNVLEEIYPVTLHLISLEGQVYTELKTLQLDLRELSNYLLAYVERIENYMAMGVNLKVKLKEDNIEVERYPLWALVNIAERELRKGIEGDRELLAYILVKDLYRAVNAGRKELIEDSVFRIFRQGRGLLEGTGKASGELRKVLRAFMQEHHLEVLV
#=GC seq_cons                   .hSWVVMDAGlpPst--hADALEsuhcoLtpRs+hpoS+MGRNDRSSaDKVLsAWFGhpAP-TYsELFELVlsETIKLLRsGcIDPucSLuSIKhDKNGTYLG.sYNGE.AIhPAlIKQPEYYEhQSsFLpPTsGQKAQIhhDPLWFShhuhGFhTuFAGFIsG+YYLMTKPGIEsaaP.-VE-IlcpGlL.LTsAGhSuRhpLsTEELYEhKlsMKLAEEGRsVlEElYPVTLHLISLEGQVYTELKThQLsLptLSpYhtpYVc+IEshphhGlsLhVcLKEGNhplpKYPLWALVDIAE+ELhKGVsGDtEhLAYIFVKDLYRAlNSGR+ELIcDuVFRLFRQGRuLLEGoGRASGEhRKVh+sFM.p-HLEVLl
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