GenomeNet

Database: Pfam
Entry: Cauli_DNA-bind
LinkDB: Cauli_DNA-bind
Original site: Cauli_DNA-bind 
#=GF ID   Cauli_DNA-bind
#=GF AC   PF03310.8
#=GF DE   Caulimovirus DNA-binding protein
#=GF AU   Mifsud W
#=GF SE   Pfam-B_3746 (release 6.5)
#=GF GA   21.00 21.00;
#=GF TC   21.00 22.90;
#=GF NC   20.90 20.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR004986;
#=GF SQ   30
#=GS VAP_CAMVS/4-124       AC P03551.1
#=GS VAP_CAMVS/4-124       DR PDB; 3F6N A; 4-72;
#=GS VAP_CAMVS/4-124       DR PDB; 3K4T D; 4-70;
#=GS VAP_CAMVS/4-124       DR PDB; 3K4T B; 4-73;
#=GS VAP_CAMVS/4-124       DR PDB; 3F6N B; 4-75;
#=GS VAP_CAMVS/4-124       DR PDB; 3F6N D; 4-74;
#=GS VAP_CAMVS/4-124       DR PDB; 3K4T A; 4-71;
#=GS VAP_CAMVS/4-124       DR PDB; 3K4T C; 4-74;
#=GS VAP_CAMVS/4-124       DR PDB; 3F6N C; 4-74;
#=GS F2WW30_9VIRU/1-101    AC F2WW30.1
#=GS Q83159_9VIRU/4-124    AC Q83159.1
#=GS A9UD02_9VIRU/1-101    AC A9UD02.1
#=GS Q5J1S3_9VIRU/4-121    AC Q5J1S3.1
#=GS Q7THB6_9VIRU/1-120    AC Q7THB6.1
#=GS Q2QDC0_9VIRU/4-40     AC Q2QDC0.1
#=GS Q64FW7_9VIRU/4-40     AC Q64FW7.1
#=GS VAP_CAMVE/4-124       AC Q02967.1
#=GS VAP_CERV/3-124        AC P05398.1
#=GS Q683K9_CERV/3-124     AC Q683K9.1
#=GS Q83167_9VIRU/4-124    AC Q83167.1
#=GS VAP_CAMVN/4-124       AC Q00967.1
#=GS Q2QDB1_9VIRU/4-40     AC Q2QDB1.1
#=GS Q9WI34_9VIRU/4-124    AC Q9WI34.1
#=GS C5WX78_SORBI/164-264  AC C5WX78.1
#=GS I0J9E5_9VIRU/1-95     AC I0J9E5.1
#=GS B2D1M8_9VIRU/1-124    AC B2D1M8.1
#=GS Q8JTA4_9VIRU/1-124    AC Q8JTA4.1
#=GS VAP_CAMVD/4-124       AC P03553.1
#=GS B2CXY3_9VIRU/1-122    AC B2CXY3.1
#=GS F2X5R7_9VIRU/1-101    AC F2X5R7.1
#=GS F5A7F9_9VIRU/1-101    AC F5A7F9.1
#=GS A9QKR5_9VIRU/3-119    AC A9QKR5.1
#=GS VAP_CAMVC/4-124       AC P03552.1
#=GS Q2QDB7_9VIRU/4-40     AC Q2QDB7.1
#=GS G3JWZ6_9VIRU/3-120    AC G3JWZ6.1
#=GS Q66160_9VIRU/4-124    AC Q66160.1
#=GS VAP_FMVD/1-115        AC P09522.1
#=GS Q2QDB4_9VIRU/4-40     AC Q2QDB4.1
VAP_CAMVS/4-124                  ..........LNQIQKEVS.EILSDQKSMKADIKAI...LELLGSQN.P.....IKESLETVAAKIVND...LTKLINDCPCNKEILEALGTQP.....KEQLI.EQPKEK.......GKGLNLGK....YSYPNYGVGNEELGSSGNPKALTWP.FKAPA-g.....................
#=GR VAP_CAMVS/4-124       SS    ..........HHHHHHHHH.HHHHHHHHHHHHHHHH...HHHHHTS-.-.....HHHHHHHHHHHHHHH...HHHHHHT-TTHHHHHHHHT---.....XXXXX.XXXXXX.......XXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX-X.....................
F2WW30_9VIRU/1-101               .....msllk---------.--------LEELINKL...ILKIDGLV.S.....-NENLEVIAAKIIKE...VLNEIGK--ISKQPLETEKS--.....ETEKS.EPKKE-.......--KRSFQK....YSFPNFNVGNPSLGNSKSPNALKWP.FG----stsn..................
Q83159_9VIRU/4-124               ..........LNQIQKEVS.EILSDQKSMKADIKAI...LELLGSQN.P.....IKESLEAVAAKIVND...LSKLINDCPCNKEILEALGNQP.....KEQLI.EQPKEK.......GKGLNLGK....YSYPNYGVGNEELGSSGNPKALTWP.FKAPA-g.....................
A9UD02_9VIRU/1-101               ......msll---------.-------KLEELINKL...ILKLDSLV.S.....-NENLEVIAAKIIKE...VLDEIDKL--SKQPLETEKS--.....ETEKS.EAKNE-.......--KRSFQK....YSFPNFNVGNPSLGSSKSPNALTWP.FG----stsn..................
Q5J1S3_9VIRU/4-121               ..........LNQIQKEVS.QALEEIRSLKKDTEAI...LAKLGSTE.P.....--NNLEAIAAKIIND...VTKVIRDCPCNKEILEAFAKQPe...kKGEII.PSNKPG.......SSSSKLKK....YSYPNTGVGNSNLGSSENPKALTWP.F-----gs....................
Q7THB6_9VIRU/1-120               ........mt---TIKDLA.ALIEGLREEISKLKAE...ITSKDTGP.T.....DNTALESLGAKIIKE...LSDKMDKCECTERLKKELQEQPd...kGKQIVsPDKQES......sTPSSNFTR....YSYPNWNVGNASLGSSGNPDALKWP.------pv....................
Q2QDC0_9VIRU/4-40                ..........LNQIQKEVS.EILSDQKSMKMDIKAI...LDILGSQN.P.....IKE------------...----------------------.....-----.------.......--------....-------------------------.------......................
Q64FW7_9VIRU/4-40                ..........LNQIQKEVS.EILSDQKSMKMDIKAI...LDILGSQN.P.....TK-------------...----------------------.....-----.------.......--------....-------------------------.------e.....................
VAP_CAMVE/4-124                  ..........LNQIQKEVS.EILSDQKSMKSDIKAI...LELLGSQN.P.....TKESLEAVAAKIVND...LTKLINDCPCNKEILEALGNQP.....KEQLI.EQPKEK.......GKGLNLGK....YSYPNYGVGNEELGSSGNPKALTWP.FKAPA-g.....................
VAP_CERV/3-124                   ..........LATIASEIE.VVKTNQKTIESKIDQI...LAKIGSTP.D.....ESSNLESVAAKIISD...LTKEMKECHCNKEIVEILNK--.....DKAII.PSPEQDs.....iQKRLSEPQ....YTFPNFDVGNEGMGSSTNPNALKWPpTEKPQP......................
Q683K9_CERV/3-124                ..........LATIASEIE.VVKTNQKTIESKIDQI...LAKIGSTP.E.....ESSNLESVAAKIISD...LTKEMKECHCNKEIVEILNK--.....DKAII.PSPERDs.....iQKKLSEPQ....YTFPNFDVGNEGMGSSTNPNALKWPpTEKPQP......................
Q83167_9VIRU/4-124               ..........LNQIQKEVS.EVRSVQKSMKADIKAI...LELLGSQN.P.....TKESLEAVAAKIVND...LTKLINDCPCNKEILEALGNQP.....KEQLI.EQPKEK.......GKGLNLGK....YSYPNYGVGNEELGSSGNPKALTWP.FKAPA-g.....................
VAP_CAMVN/4-124                  ..........LNQIQKEVS.EILSDQKSMKSDIKAI...LEMLGSQN.P.....IKESLEAVAAKIVND...LTKLINDCPCNKEILEALGNQP.....KEQLI.EQPKEK.......GKGLNLGK....YSYPNYGVGNEELGSSGNPKALTWP.FKAPA-g.....................
Q2QDB1_9VIRU/4-40                ..........LNQIQKEVS.EILSDQKSMKMDIKAI...LDILGSQN.P.....NK-------------...----------------------.....-----.------.......--------....-------------------------.------e.....................
Q9WI34_9VIRU/4-124               ..........LNQIQKEVS.EILSDQKSMKTDIKAI...LELLGSQN.P.....IKESLEAVAAKIVND...LTKLINDCPCNKEILEALGKQP.....KDQLV.EQPKEK.......GKGLNLGK....YSYPNYGVGNEELGSSGNPKALTWP.FKAPA-g.....................
C5WX78_SORBI/164-264             .......qll----MTEVV.KLRQEQQNTKSDLQAM...EEKLQDTE.Q.....KQQQMMAFMARVMQNpdfMRQLISQREMRKELEDAISKKR.....RRRIV.QGPEADs.....mGTGSSL--....-------------------------.------eqgsqvvfe.............
I0J9E5_9VIRU/1-95                mgsvtqkter---------.-IYDEMLKMEERFSRL...-EQ-EQQD.H.....FSEKIDQASATLLAEirkIQSKLENCDCNKEILDALKAQD.....R----.------.......--------....-------------------------.------tkgkgsgsnladaldlanrspp
B2D1M8_9VIRU/1-124               mttivelgak---------.-----LDALSQKVNEL...LKEKQ---.-.....-VDKTESAAAKIIKD...LSDRIEKDK--QELISLIKSCPcgrhdDPKTP.PEPTKKgpeepgtSKDPNPPKpvipYSYPNWNVGDEAYGSSKGPNPPSWP.------pryt..................
Q8JTA4_9VIRU/1-124               .......mst----ISELA.VLIEELKKEVADLVTTvkdLAKDKSPE.T.....DQNALKSLGAKIIKD...ISDKIDQCECTDKLFDRLKG--.....KGSVI.PTQQETp....evSEGAKYQK....YSWPNHNVGNPELGSSGVKNPVYWPpTS----fps...................
VAP_CAMVD/4-124                  ..........LNQIQKEVS.EILSDQKSMKADIKAI...LELLGSQN.P.....IKESLETVAAKIVND...LTKLINDCPCNKEILEALGNQP.....KEQLI.GQPKEK.......GKGLNLGK....YSYPNYGVGNEELGSSGNPKALTWP.FKAPA-g.....................
B2CXY3_9VIRU/1-122               .......mtt---------.---TNLKEIHDLIIQV...LEEIKSLKkDindysKDSNNEAIAAKIITD...IAEQIKKCPCNKEILDVLKNSK.....DKQVI.PHQGKPdt...ssDKPSSLQK....YSYPNFRVGNEELGESKNPDSLRWP.------egfqkk................
F2X5R7_9VIRU/1-101               ......msll---------.-------KIEELINKL...IQKLDGLV.C.....-NENLEVIAAKIIKE...VLDEIGEI--SKQPLETEKS--.....ETEK-.SEPKN-.......-EKRSFQK....YSFPNFNVGNPSLGSSKSPNALTWP.FG----stsn..................
F5A7F9_9VIRU/1-101               .......msl---------.------LKIEELINKL...VLKIDSLV.S.....-NENLEVIAAKIIKE...VLDEIDKI--SKQPLETEKS--.....ETEKS.EAKNE-.......--KRSFQK....YSFPNFNVGNPSLGSSKSPNALTWP.FG----stsn..................
A9QKR5_9VIRU/3-119               .......tla--T-IKEISdETLSLVKELLTMIKQI...IDRPKSST.Q.....-TELTEPIAAKIIKD...ISDKIDKCECAEKLKQELKAGK.....DMQVS.KPEEPE.......NLPKRIQK....YSYPNWGVGNESLGSSGNPKALEWP.------pk....................
VAP_CAMVC/4-124                  ..........LNQIQKEVS.EILSDQKSMKSDIKAI...LELLGSQN.P.....TKESLEAVAAKIVND...LTKLINDCPCNKEILEALGNQP.....KEQLI.EQPKEK.......GKGLNLGK....YTYPNYGVGNEELGSSGNPKALTWP.FKAPA-g.....................
Q2QDB7_9VIRU/4-40                ..........LNQIQKEVS.EILSDQKSMKMDIKAI...LDILGSQN.P.....NK-------------...----------------------.....-----.------.......--------....-------------------------.------e.....................
G3JWZ6_9VIRU/3-120               .......tla--T-IKEISdETLSLVKELLTMIKQI...IDKPESSI.Q.....-TELTEPIAAKIIKD...ISDKIDKCECAEKLKQELKAGK.....DMQVS.-KPEDPe.....kPSTKGFQN....YSYPNWGVGIESLRSSGNPKALEWP.------pk....................
Q66160_9VIRU/4-124               ..........LNQIQKEVS.EILSDQKSMKADIKAI...LELIGSQN.S.....IKESLEAVAAKIVND...LTKLINDCPCNKEILEALGNQP.....KEQLI.EQPKEK.......GKGLNLGK....YSYPNYGVGNEELGSSGNPKALTWP.FKAPA-g.....................
VAP_FMVD/1-115                   ..........MAATLSEIR.ELIQSLTKTANEIKAM...LERNSAGK.P.....--TGIEEAAAKIIKD...IGDKIDQCECTKKIEEMLDQKQn...aDTQIV.PTKQES.......---SGLVK....YSYPNWNVGNEELGSSGNPNAVKWP.---PR-k.....................
Q2QDB4_9VIRU/4-40                ..........LNQIQKEVS.EILSDQKSMKMDIKAI...LDILGSQN.P.....NK-------------...----------------------.....-----.------.......--------....-------------------------.------e.....................
#=GC SS_cons                     ..........HHHHHHHHH.HHHHHHHHHHHHHHHH...HHHHHTS-.-.....HHHHHHHHHHHHHHH...HHHHHHT-TTHHHHHHHHT---.....XXXXX.XXXXXX.......XXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX-X.....................
#=GC seq_cons                    ..........hsph.KElu.cllos.Kshcs-IKAI...L-hluSps.s......p-sLEslAAKIlpD...lschIscC.CsKcll-tLtst......cppl...p.pct.......tpthshtK....YSaPNasVGNtpLGSStsPpALpWP.......s.....................
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