GenomeNet

Database: Pfam
Entry: Cauli_DNA-bind
LinkDB: Cauli_DNA-bind
Original site: Cauli_DNA-bind 
#=GF ID   Cauli_DNA-bind
#=GF AC   PF03310.11
#=GF DE   Caulimovirus DNA-binding protein
#=GF AU   Mifsud W
#=GF SE   Pfam-B_3746 (release 6.5)
#=GF GA   21.00 21.00;
#=GF TC   21.40 21.40;
#=GF NC   20.80 20.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR004986;
#=GF SQ   4
#=GS VAP_CAMVS/4-124       AC P03551.1
#=GS VAP_CAMVS/4-124       DR PDB; 3F6N A; 4-72;
#=GS VAP_CAMVS/4-124       DR PDB; 3K4T D; 4-70;
#=GS VAP_CAMVS/4-124       DR PDB; 3K4T B; 4-73;
#=GS VAP_CAMVS/4-124       DR PDB; 3F6N B; 4-75;
#=GS VAP_CAMVS/4-124       DR PDB; 3F6N D; 4-74;
#=GS VAP_CAMVS/4-124       DR PDB; 3K4T A; 4-71;
#=GS VAP_CAMVS/4-124       DR PDB; 3K4T C; 4-74;
#=GS VAP_CAMVS/4-124       DR PDB; 3F6N C; 4-74;
#=GS M1DQ90_SOLTU/1-120    AC M1DQ90.1
#=GS J9D742_EDHAE/3-59     AC J9D742.1
#=GS C5WX78_SORBI/164-264  AC C5WX78.1
VAP_CAMVS/4-124                  .......................LNQIQKEVSEILSDQKSMKADIKAILELLGS..QNPIKESLETVAAKIVND...LTKLINDCPCNKEILEALGTQP.............KEQLIEQPKEK..GKGLNLGKYSYPNYGVGNEELGSSGNPKALTWPFKAPA-g........
#=GR VAP_CAMVS/4-124       SS    .......................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT..S--HHHHHHHHHHHHHHH...HHHHHHT-TTHHHHHHHHT---.............XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-X........
M1DQ90_SOLTU/1-120               .......................-----------------MDKKIDQILDLLRNkpQSQEIEKMEQIAAKIITD...IANKIDKCECNKEITELLKNKAginrsksagdlpkDDQIQKTPKEPetKKPVQGWRYKWPNYNVGNAELGSSGNPKAMRWPE-----dldn.....
J9D742_EDHAE/3-59                drsvvevfkeikrhrkfepahek-------------------------------..--------NSNAFEIIND...VKDFLKKCECIKDVFEFLIKK-.............-----------..---------------------------------------wks......
C5WX78_SORBI/164-264             ....................qll----MTEVVKLRQEQQNTKSDLQAMEEKLQD..TEQKQQQMMAFMARVMQNpdfMRQLISQREMRKELEDAISKKR.............RRRIVQGPEADsmGTGSSL---------------------------------eqgsqvvfe
#=GC SS_cons                     .......................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT..S--HHHHHHHHHHHHHHH...HHHHHHT-TTHHHHHHHHT---.............XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-X........
#=GC seq_cons                    ........................................hctclpth.-hLts..pp...pphpshAA+IlsD...lpphIscCECpKElhEhLtpK..............ccpl.ptPct...tps.ph.................................t.s......
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