GenomeNet

Database: Pfam
Entry: Como_SCP
LinkDB: Como_SCP
Original site: Como_SCP 
#=GF ID   Como_SCP
#=GF AC   PF02248.14
#=GF DE   Small coat protein
#=GF AU   Bateman A, Mian N
#=GF SE   Pfam-B_2294 (release 5.2)
#=GF GA   21.90 21.90;
#=GF TC   46.60 45.50;
#=GF NC   19.10 16.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   1546463
#=GF RT   Nucleotide sequence and genetic map of cowpea severe mosaic
#=GF RT   virus RNA 2 and comparisons with RNA 2 of other comoviruses. 
#=GF RA   Chen X, Bruening G; 
#=GF RL   Virology 1992;187:682-692.
#=GF DR   INTERPRO; IPR003182;
#=GF DR   SCOP; 1bmv; fa;
#=GF CC   This family contains the small coat protein (SCP) [1] of the 
#=GF CC   comoviridae viral family.
#=GF SQ   4
#=GS Q66170_CPMVS/720-899  AC Q66170.1
#=GS Q9WJE1_CPMVS/716-895  AC Q9WJE1.1
#=GS POL2_CPMVS/837-1016   AC P03599.1
#=GS POL2_CPMVS/837-1016   DR PDB; 1NY7 1; 4-183;
#=GS POL2_CPMVS/837-1016   DR PDB; 2BFU S; 4-183;
#=GS POL2_CPMVS/837-1016   DR PDB; 5A33 A; 4-183;
#=GS POL2_CPMVS/837-1016   DR PDB; 5A32 A; 4-183;
#=GS POL2_BBWVS/858-1006   AC Q76L39.1
Q66170_CPMVS/720-899             .............CAEASDVYSPCMIASTPPAP--FSDVTAVTFDLINGKITPVGDDNWNTHIYNPPIMNVLRTAAWKSGTIHVQLNVRGAGVKRADWDGQVFVYLRQSMNPESYDARTFVISQPGSAMLNFSFDIIGPNSGFE.FAESPWANQTTWYLECVATNPRQIQQFEVNMRFDPNFRVAGNILMPPFPLS.......
Q9WJE1_CPMVS/716-895             .............CAEASDVYSPCMIASTPPAP--FSDVTAVTFDLINGKITPVGDDNWNTHIYNPPIMNVLRTAAWKSGTIHVQLNVRGAGVKRADWDGQVFVYLRQSMNPESYDARTFVISQPGSAMLNFSFDIIGPNSGFE.FAESPWANQTTWYLECVATNPRQIQQFEVNMRFDPNFRVAGNILMPPFPLS.......
POL2_CPMVS/837-1016              .............CAEASDVYSPCMIASTPPAP--FSDVTAVTFDLINGKITPVGDDNWNTHIYNPPIMNVLRTAAWKSGTIHVQLNVRGAGVKRADWDGQVFVYLRQSMNPESYDARTFVISQPGSAMLNFSFDIIGPNSGFE.FAESPWANQTTWYLECVATNPRQIQQFEVNMRFDPNFRVAGNILMPPFPLS.......
#=GR POL2_CPMVS/837-1016   SS    .............-----S--EEEEEEE---TT----S-EEEEEETTTTEEEESTT--SEEEE---HHHHHHHHEEEEEEEEEEEEEEEE-S--GGG--B-EEEEEESSSSTTS-ESEEEEEBSSSSEEEEEEEEE-BTTTS-E.ETT-TCCG----EEEEEES-TTTEEEEEEEEEE-TT-EEEEEEE---EE--.......
POL2_BBWVS/858-1006              lllkmrldgtkat---------------------------------------------EDFRIVHSPLVRVLQNCAWLRGTIHFKIVVRA-NSEMMSYQRTSQVHVTAHENSLSSNEFFSGMLTATSGELEFSKEVVGPVEGFSsMGWNVQGNKKFYKLCIALGNVHEYEAVKVMASFGDDVEFAGQQ--------kaghyal
#=GC SS_cons                     .............-----S--EEEEEEE---TT----S-EEEEEETTTTEEEESTT--SEEEE---HHHHHHHHEEEEEEEEEEEEEEEE-S--GGG--B-EEEEEESSSSTTS-ESEEEEEBSSSSEEEEEEEEE-BTTTS-E.ETT-TCCG----EEEEEES-TTTEEEEEEEEEE-TT-EEEEEEE---EE--.......
#=GC seq_cons                    .............CAEASDVYSPCMIASTPPAP..FSDVTAVTFDLINGKITPVGDDNWNTHIYNPPIMNVLRTAAWKSGTIHVQLNVRGAGVKRADWDGQVFVYLRQSMNPESYDARTFVISQPGSAMLNFSFDIIGPNSGFE.FAESPWANQTTWYLECVATNPRQIQQFEVNMRFDPNFRVAGNILMPPFPLS.......
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