GenomeNet

Database: Pfam
Entry: DAP_B
LinkDB: DAP_B
Original site: DAP_B 
#=GF ID   DAP_B
#=GF AC   PF07930.7
#=GF DE   D-aminopeptidase, domain B
#=GF AU   Fenech M
#=GF SE   Pfam-B_29283 (release 14.0)
#=GF GA   21.40 21.40;
#=GF TC   21.40 23.20;
#=GF NC   21.30 20.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   D-stereospecific_aminopeptidase
#=GF RN   [1]
#=GF RM   10986464
#=GF RT   Crystal structure of a D-aminopeptidase from Ochrobactrum
#=GF RT   anthropi, a new member of the 'penicillin-recognizing enzyme'
#=GF RT   family. 
#=GF RA   Bompard-Gilles C, Remaut H, Villeret V, Prange T, Fanuel L,
#=GF RA   Delmarcelle M, Joris B, Frere J, Van Beeumen J; 
#=GF RL   Structure Fold Des 2000;8:971-980.
#=GF DR   INTERPRO; IPR012856;
#=GF DR   SCOP; 1ei5; sf;
#=GF CC   D-aminopeptidase (Swiss:Q9ZBA9) is a dimeric enzyme with each
#=GF CC   monomer being composed of three domains. Domain B is organised
#=GF CC   to form a beta barrel made up of eight antiparallel beta
#=GF CC   strands. It is connected  to domain A, the catalytic domain, by
#=GF CC   an eight-residue sequence, and also interacts with both domains
#=GF CC   A and C  via non-covalent bonds. Domain B probably functions in
#=GF CC   maintaining domain C in a good position to interact with domain
#=GF CC   A [1].
#=GF SQ   66
#=GS G6XMD4_9PROT/355-440  AC G6XMD4.1
#=GS D0RFC1_9RHIZ/334-421  AC D0RFC1.1
#=GS DAP_RHOS4/333-414     AC Q3IX78.1
#=GS C9UIF5_BRUAO/334-421  AC C9UIF5.1
#=GS D0ASZ0_BRUAO/334-421  AC D0ASZ0.1
#=GS F2GZ58_BRUM5/334-421  AC F2GZ58.1
#=GS E0DWL2_9RHIZ/334-421  AC E0DWL2.1
#=GS DAP_BRUC2/334-421     AC A9MCM7.1
#=GS D1FBF5_9RHIZ/334-421  AC D1FBF5.1
#=GS D1F2U5_BRUML/334-421  AC D1F2U5.1
#=GS H3PMR7_BRUAO/334-421  AC H3PMR7.1
#=GS DAP_BRUO2/334-421     AC A5VVL2.1
#=GS DAP_OCHAN/334-421     AC Q9ZBA9.3
#=GS DAP_OCHAN/334-421     DR PDB; 1EI5 A; 334-421;
#=GS DAP_BRUA1/334-421     AC B2SD81.1
#=GS G7H7Y1_ASPOZ/349-435  AC G7H7Y1.1
#=GS DAP_BRUAB/334-421     AC Q579G4.1
#=GS C7LJ67_BRUMC/334-421  AC C7LJ67.1
#=GS G4PM73_BRUML/334-421  AC G4PM73.1
#=GS H3QXH5_BRUAO/334-421  AC H3QXH5.1
#=GS D6LSU2_9RHIZ/24-111   AC D6LSU2.1
#=GS D0GA00_BRUML/334-421  AC D0GA00.1
#=GS D0B7Z2_BRUME/334-421  AC D0B7Z2.1
#=GS C9TBE1_9RHIZ/334-421  AC C9TBE1.1
#=GS D1EKG2_9RHIZ/334-421  AC D1EKG2.1
#=GS F9F687_FUSOF/348-435  AC F9F687.1
#=GS H3Q0H7_BRUAO/334-421  AC H3Q0H7.1
#=GS C4WGC5_9RHIZ/334-421  AC C4WGC5.1
#=GS G8NKA2_BRUSS/334-421  AC G8NKA2.1
#=GS H3PDY3_BRUAO/334-421  AC H3PDY3.1
#=GS DAP_OCHA4/334-421     AC A6WYS5.1
#=GS G8SVS5_BRUCA/334-421  AC G8SVS5.1
#=GS D0PH22_BRUSS/334-421  AC D0PH22.1
#=GS H2WSW5_CAEJA/334-421  AC H2WSW5.1
#=GS D0P7R6_BRUSS/334-421  AC D0P7R6.1
#=GS C9URM7_BRUAO/334-421  AC C9URM7.1
#=GS DAP_RHOSK/333-414     AC B9KTA6.1
#=GS E2PM20_9RHIZ/298-385  AC E2PM20.1
#=GS C9T252_9RHIZ/334-421  AC C9T252.1
#=GS H3QDF9_BRUAO/334-421  AC H3QDF9.1
#=GS C9VNH6_BRUAO/334-421  AC C9VNH6.1
#=GS H3PV54_BRUAO/334-421  AC H3PV54.1
#=GS DAP_BRUA2/334-421     AC Q2YLB4.1
#=GS D7H699_BRUAO/334-421  AC D7H699.1
#=GS DAP_BRUSI/334-421     AC A9WVV8.1
#=GS D1D0L0_9RHIZ/334-421  AC D1D0L0.1
#=GS C9V1E7_BRUAO/334-421  AC C9V1E7.1
#=GS C0GAT1_9RHIZ/334-421  AC C0GAT1.1
#=GS H3R3C2_BRUAO/334-421  AC H3R3C2.1
#=GS C9VG95_9RHIZ/334-421  AC C9VG95.1
#=GS DAP_BRUME/334-421     AC Q8YD27.1
#=GS DAP_BRUMB/334-421     AC C0RM93.1
#=GS F2HZS3_BRUMM/334-421  AC F2HZS3.1
#=GS B8NWC0_ASPFN/308-394  AC B8NWC0.1
#=GS C9TYH9_9RHIZ/334-421  AC C9TYH9.1
#=GS D0BFX8_BRUSS/334-421  AC D0BFX8.1
#=GS C4IUS4_BRUAO/334-421  AC C4IUS4.1
#=GS C9U8U7_BRUAO/334-421  AC C9U8U7.1
#=GS D1EVB1_BRUML/334-421  AC D1EVB1.1
#=GS Q2TWX4_ASPOR/308-394  AC Q2TWX4.1
#=GS F3U436_RHOSH/333-414  AC F3U436.1
#=GS DAP_BRUSU/334-421     AC Q8FV99.1
#=GS G8T3Z9_BRUAO/334-421  AC G8T3Z9.1
#=GS E0DRZ7_9RHIZ/334-421  AC E0DRZ7.1
#=GS C8S549_9RHOB/339-418  AC C8S549.1
#=GS DAP_RHOS1/333-414     AC A3PRU3.1
#=GS H3QPG0_BRUAO/334-421  AC H3QPG0.1
G6XMD4_9PROT/355-440             .yeadrtt-------QQPDALYGTYLERETGLSARIEPAPDGA-RLRYMMIPEMLDGLSPDRAQGTGVTVTAQGDEVRMERPGENRT---------giltrcdt
D0RFC1_9RHIZ/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
DAP_RHOS4/333-414                eapkgarp----------EGWAGQWLDPESGLLLRVGEDAEG-LTLRFATGPDRLTAGEDGVPRGAGVSLAREGAMLVMNRTSDNLTV--------raepl...
C9UIF5_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
D0ASZ0_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
F2GZ58_BRUM5/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEKMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKG-k.......
E0DWL2_9RHIZ/334-421             ........PAKPVCAQANPGWFGSWLNPETGLVLSLEDAGGGRMKTRFGTGPEIMDVSGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
DAP_BRUC2/334-421                ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
D1FBF5_9RHIZ/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
D1F2U5_BRUML/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEKMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
H3PMR7_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
DAP_BRUO2/334-421                ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
DAP_OCHAN/334-421                ........SSEVSRVEADSAWFGSWLDDETGLVLSLEDAGHGRMKARFGTSPEMMDVVSANEARSAVTTIRRDGETIELVRASENLRLSMKRVKGE........
#=GR DAP_OCHAN/334-421     SS    ........----------GGG-EEEE-TTT--EEEEEE-STTEEEEE-SSS-EEEEEEETTEEE-SS-EEEEETTEEEEEEGGGTEEEEEEE--S-........
DAP_BRUA1/334-421                ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
G7H7Y1_ASPOZ/349-435             ...pqsdp------VNPSPDWFGTFYDPDAQLVVEIRHGGQGHVIVSYAGSDETLICVGENEAGSNNTVGIIDGGIPKLRRLVDNRVLDVKRV---atg.....
DAP_BRUAB/334-421                ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
C7LJ67_BRUMC/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
G4PM73_BRUML/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEKMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKG-k.......
H3QXH5_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
D6LSU2_9RHIZ/24-111              ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
D0GA00_BRUML/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEKMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKG-k.......
D0B7Z2_BRUME/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEKMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
C9TBE1_9RHIZ/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
D1EKG2_9RHIZ/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
F9F687_FUSOF/348-435             ....pppp----TLVDASPAWPGIYLDDGTQLAVTIKNGKKGQIVVNYANYAEPVNLTDPERGESRAMVAVVDGDNLRIHRLKENRTLNAKRLK--ig......
H3Q0H7_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
C4WGC5_9RHIZ/334-421             .......t-TEQVRVEADAAWFGSWLDHETGLVLSLEDAGRGRMKARFGTGPEVMDVVGENEARSSMTTIRRKGDTIHLAREDENLSLTMQRLKG-a.......
G8NKA2_BRUSS/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
H3PDY3_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
DAP_OCHA4/334-421                .......t-SEQVRVAADAVWFGSWLDHETGLVLSLEDAGRGRMKARFGTGPEMMDVVGENEARSSMTAIRRDGDTIHLAREDENLSLTMQRLKG-a.......
G8SVS5_BRUCA/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
D0PH22_BRUSS/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
H2WSW5_CAEJA/334-421             .......t-SEPQRAEADTAWFGSWLCQDTGLVLSLEDAGCGRLKARFGTGPEMMDVESANEARSSMTTIRRDGDVIELLRDDENLRLMMNRIKGE........
D0P7R6_BRUSS/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
C9URM7_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
DAP_RHOSK/333-414                eapkgarp----------EGWAGQWLDPESGLLLRVGEDAEG-LTLRFATGPDRLTLGEDGVPRGAGVSLARDGAMLVMNRTSDNLTV--------raepl...
E2PM20_9RHIZ/298-385             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDVSGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLTGE........
C9T252_9RHIZ/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
H3QDF9_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
C9VNH6_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
H3PV54_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
DAP_BRUA2/334-421                ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
D7H699_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
DAP_BRUSI/334-421                ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
D1D0L0_9RHIZ/334-421             ........PAKPVCAQANPGWFGSWLNPETGLVLSLEDAGGGRMKTRFGTGPEIMDVSGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
C9V1E7_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
C0GAT1_9RHIZ/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
H3R3C2_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
C9VG95_9RHIZ/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
DAP_BRUME/334-421                ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEKMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
DAP_BRUMB/334-421                ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEKMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKG-k.......
F2HZS3_BRUMM/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEKMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKG-k.......
B8NWC0_ASPFN/308-394             ...pqsdp------VNPSPDWFGTFYDPDAQLVVEIRHGGQGHVIVSYAGSDETLICAGENEAGSNNTVGIIDGGIPKLRRLVDNRVLDVKRV---atg.....
C9TYH9_9RHIZ/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
D0BFX8_BRUSS/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
C4IUS4_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
C9U8U7_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
D1EVB1_BRUML/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEKMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
Q2TWX4_ASPOR/308-394             ...pqsdp------VNPSPDWFGTFYDPDAQLVVEIRHGGQGHVIVSYAGSDETLICVGENEAGSNNTVGIIDGGIPKLRRLVDNRVLDVKRV---atg.....
F3U436_RHOSH/333-414             eapkgarp----------EGWAGQWLDPESGLLLRVGEDAEG-LTLRFATGPDRLTAGEDGVPRGAGVSLAREGAMLVMNRTSDNLTV--------raepl...
DAP_BRUSU/334-421                ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
G8T3Z9_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
E0DRZ7_9RHIZ/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDVSGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
C8S549_9RHOB/339-418             ....pvpg----------QGWDGLWLDRERALFLRTRDVPAG-VRLDYAASPVVLTPTSETRAEAPGLVLRREGDLLVMERQTENLTVRAERL---vp......
DAP_RHOS1/333-414                eapkgagp----------EGWAGQWLDPESGLLLRVGEDAEG-LTLRFATGPDRLTVGEDGVPRGAGVSLAREGATLVMNRTSDNLTV--------raepl...
H3QPG0_BRUAO/334-421             ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
#=GC SS_cons                     ........----------GGG-EEEE-TTT--EEEEEE-STTEEEEE-SSS-EEEEEEETTEEE-SS-EEEEETTEEEEEEGGGTEEEEEEE--S-........
#=GC seq_cons                    ........PAKPVRAQANPGWFGSWLNPETGLVLSLEDAGGGRMKARFGTGPEIMDISGENEAQSSMTTLRRDGDMIHLARKDENLHLAMHRLKGE........
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