GenomeNet

Database: Pfam
Entry: DUF1860
LinkDB: DUF1860
Original site: DUF1860 
#=GF ID   DUF1860
#=GF AC   PF08949.8
#=GF DE   Domain of unknown function (DUF1860)
#=GF AU   Mistry J, Sammut SJ
#=GF SE   pdb_1w8x
#=GF GA   25.00 25.00;
#=GF TC   483.50 482.80;
#=GF NC   20.30 20.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   Domain_of_unknown_function
#=GF RN   [1]
#=GF RM   15525981
#=GF RT   Insights into assembly from structural analysis of bacteriophage
#=GF RT   PRD1. 
#=GF RA   Abrescia NG, Cockburn JJ, Grimes JM, Sutton GC, Diprose JM,
#=GF RA   Butcher SJ, Fuller SD, San Martin C, Burnett RM, Stuart DI,
#=GF RA   Bamford DH, Bamford JK; 
#=GF RL   Nature. 2004;432:68-74.
#=GF DR   INTERPRO; IPR015044;
#=GF CC   This domain has no known function. It is predominantly found in
#=GF CC   the C-terminus of bacteriophage spike proteins [1].
#=GF SQ   1
#=GS P5_BPPRD/122-340  AC P22536.2
#=GS P5_BPPRD/122-340  DR PDB; 1YQ5 A; 197-340;
#=GS P5_BPPRD/122-340  DR PDB; 1YQ8 A; 142-340;
#=GS P5_BPPRD/122-340  DR PDB; 1YQ6 B; 197-340;
#=GS P5_BPPRD/122-340  DR PDB; 1YQ5 B; 197-340;
#=GS P5_BPPRD/122-340  DR PDB; 1YQ6 A; 197-340;
#=GS P5_BPPRD/122-340  DR PDB; 1YQ6 C; 197-340;
P5_BPPRD/122-340             PSGIKGDKGDPGAPGPAGGTVVVEDSGASFGESLLDTTSEPGKILVKRISGGSGITVTDYGDQVEIEASGGGGGGGGVTDALSLMYSTSTGGPASIAANALTDFDLSGALTVNSVGTGLTKSAAGIQLAAGKSGLYQITMTVKNNTVTTGNYLLRVKYGSSDFVVACPASSLTAGGTISLLIYCNVLGVPSLDVLKFSLCNDGAALSNYIINITAAKIN
#=GR P5_BPPRD/122-340  SS    XXXXXXXXXXXXXXXXXXXXXXXXXXSSSXSTTTXXSSSSTTXXXXXXXXXXTTEEEEEETTEEEEEEXXXXXXX---SEEEEEEEBTTTTS-SSB-TT-------TTSEEEEEESSSEEEESSSEEE-TT--EEEEEEEEEE-TT--SSEEEEEEEETTEEEEEEEE--SST-EEEEEEEEEE---S-TTTSEEEEEEEESSS-BSS-EEEEEEEE--
#=GC SS_cons                 XXXXXXXXXXXXXXXXXXXXXXXXXXSSSXSTTTXXSSSSTTXXXXXXXXXXTTEEEEEETTEEEEEEXXXXXXX---SEEEEEEEBTTTTS-SSB-TT-------TTSEEEEEESSSEEEESSSEEE-TT--EEEEEEEEEE-TT--SSEEEEEEEETTEEEEEEEE--SST-EEEEEEEEEE---S-TTTSEEEEEEEESSS-BSS-EEEEEEEE--
#=GC seq_cons                PSGIKGDKGDPGAPGPAGGTVVVEDSGASFGESLLDTTSEPGKILVKRISGGSGITVTDYGDQVEIEASGGGGGGGGVTDALSLMYSTSTGGPASIAANALTDFDLSGALTVNSVGTGLTKSAAGIQLAAGKSGLYQITMTVKNNTVTTGNYLLRVKYGSSDFVVACPASSLTAGGTISLLIYCNVLGVPSLDVLKFSLCNDGAALSNYIINITAAKIN
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