GenomeNet

Database: Pfam
Entry: DUF1870
LinkDB: DUF1870
Original site: DUF1870 
#=GF ID   DUF1870
#=GF AC   PF08965.7
#=GF DE   Domain of unknown function (DUF1870)
#=GF AU   Mistry J, Sammut SJ, Bateman A
#=GF SE   pdb_1s4k
#=GF GA   23.80 23.80;
#=GF TC   24.00 24.80;
#=GF NC   23.00 23.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   Domain_of_unknown_function
#=GF DR   INTERPRO; IPR015060;
#=GF CC   This domain is found in a set of hypothetical bacterial
#=GF CC   proteins. It contains a helix-turn-helix domain so may be a
#=GF CC   DNA-binding protein.
#=GF SQ   9
#=GS X2GUQ4_9GAMM/1-117      AC X2GUQ4.1
#=GS A0A077KDB8_9FLAO/1-135  AC A0A077KDB8.1
#=GS Q32FV5_SHIDS/10-127     AC Q32FV5.1
#=GS C6XCZ0_METGS/1-120      AC C6XCZ0.1
#=GS Q6LJ18_PHOPR/6-128      AC Q6LJ18.1
#=GS K0ESU4_9NOCA/9-122      AC K0ESU4.1
#=GS A0A0A7RZW3_9GAMM/1-117  AC A0A0A7RZW3.1
#=GS Q8ZPR1_SALTY/2-119      AC Q8ZPR1.1
#=GS Q8ZPR1_SALTY/2-119      DR PDB; 1S4K A; 2-119;
#=GS Q8ZPR1_SALTY/2-119      DR PDB; 1S4K B; 2-119;
#=GS YDIL_ECOLI/1-118        AC P76196.2
X2GUQ4_9GAMM/1-117                 ....MTNLELQAYRRFLMLKVSEASEY....IGKT-DASTWHNWEKGTVPVPQYVVTAMQELKKLRTDKVNII.........INSINDRVGSS.....TIRYFLTYEEFKKVNPELDIIQWRLHQSIATELYFRGLEKLC............................................................................
A0A077KDB8_9FLAO/1-135             ....MNGKKLKEIRKELGLTQTELAKL....IGRT-TMRTVQNWESDKNAIPDYVDEFLKNEIHQRHT-----.........-----------.....------------------------------------------pnfvsnnsntdfknlsvddklnylfkqneqiikeneelkdmvddltlkieislapilrhfklnadskeknnnkssi
Q32FV5_SHIDS/10-127                ....MNAYELQALRHIFAMTIDECATW....IAQTGDSESWRQWENGKCAIPDCVVEQLLAMRQQRKKHLHAI.........IEKINNRIGNN.....TMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC............................................................................
C6XCZ0_METGS/1-120                 ....MNGTTLQALRLSLGYTPQEAA-Y....MVAAVPLATWKNWESNAQPIPDEIENTLRKLVSYKRQLIEEArgqllhicnVQGMPESL---.....SLTYYGTETDWLT-QQDATALQWKPHCMAMAAL-AE------efpvi.......................................................................
Q6LJ18_PHOPR/6-128                 ....MNNVELQAIRKILMLEVTEAADV....IGNGVSSNTWQSWESGSLAIPDEIQAEIYSLCQMRETLLGET.........FKELYDKNDGSfnavgTLRYYSTLNAFLIDYPESNHLCWRLHQSVCSSLFAEGGDVE-l...........................................................................
K0ESU4_9NOCA/9-122                 taag-----FRATRELLGLPVPWCARL....FAVA--ERTVERWEKGAFQIPDTVARELAEIADETEQVVDAM.........VDAIGAGEISP.....RLHTYRTNDDYCRHEPGT-RYPATWHRAVCARVMA-------elpqvel.....................................................................
A0A0A7RZW3_9GAMM/1-117             ....MTNLELQAYRRYFMLKVAEASEF....IGNT-IAEVWHNWEQGNSTIPTYVIETMKDLKKRRQDKIDAI.........IADINNRIGSN.....NIRYFLTFEDFKKVNPTLTVLDWRLHQSIATELYFRGLEVLC............................................................................
Q8ZPR1_SALTY/2-119                 ....MNALELQALRRIFDMTIEECTIY....ITQDNNSATWQRWEAGDIPISPEIIARLKEMKARRQRRINAI.........VDKINNRIGNN.....TMRYFPDLSSFQSIYTEGDFIEWKIYQSVAAELFAHDLERLC............................................................................
#=GR Q8ZPR1_SALTY/2-119      SS    ....HHHHHHHHTT--HHHHHHHTSSS....HHHHHHTTSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCS-.........SHHHHHTTSTT.....HHHHHHHHHHHHHTTS-EEEXXXXXXXXXXXXXXXXXXXXXX............................................................................
YDIL_ECOLI/1-118                   ....MNAYELQALRHIFAMTIDECATW....IAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAI.........IEKINNRIGNN.....TMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC............................................................................
#=GC SS_cons                       ....HHHHHHHHTT--HHHHHHHTSSS....HHHHHHTTSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCS-.........SHHHHHTTSTT.....HHHHHHHHHHHHHTTS-EEEXXXXXXXXXXXXXXXXXXXXXX............................................................................
#=GC seq_cons                      ....MNshELQAlR+hhshslsEsApa....Iups.supTWcpWEsGshsIPDpVhppLtphpppRcphlpth.........lppIss+lsss.....ohRaa.shssFpph.P-sshlpW+laQSlsucLaAcsh-h..............................................................................
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