GenomeNet

Database: Pfam
Entry: DUF1870
LinkDB: DUF1870
Original site: DUF1870 
#=GF ID   DUF1870
#=GF AC   PF08965.8
#=GF DE   Domain of unknown function (DUF1870)
#=GF AU   Mistry J, Sammut SJ, Bateman A
#=GF SE   pdb_1s4k
#=GF GA   23.80 23.80;
#=GF TC   24.00 24.50;
#=GF NC   23.40 23.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   Domain_of_unknown_function
#=GF DR   INTERPRO; IPR015060;
#=GF CC   This domain is found in a set of hypothetical bacterial
#=GF CC   proteins. It contains a helix-turn-helix domain so may be a
#=GF CC   DNA-binding protein.
#=GF SQ   17
#=GS X2GUQ4_9GAMM/1-117       AC X2GUQ4.1
#=GS A0A077KDB8_9FLAO/1-135   AC A0A077KDB8.1
#=GS Q32FV5_SHIDS/10-127      AC Q32FV5.1
#=GS Q6LJ18_PHOPR/6-128       AC Q6LJ18.1
#=GS A0A0A7RZW3_9GAMM/1-117   AC A0A0A7RZW3.1
#=GS K0ESU4_9NOCA/9-122       AC K0ESU4.1
#=GS Q8ZPR1_SALTY/2-119       AC Q8ZPR1.1
#=GS Q8ZPR1_SALTY/2-119       DR PDB; 1S4K A; 2-119;
#=GS Q8ZPR1_SALTY/2-119       DR PDB; 1S4K B; 2-119;
#=GS C0DT60_EIKCO/1-121       AC C0DT60.1
#=GS J1QGW2_9ENTR/1-118       AC J1QGW2.1
#=GS A0A0G4JWD9_9ENTR/1-118   AC A0A0G4JWD9.1
#=GS I6HIV9_SHIFL/1-118       AC I6HIV9.1
#=GS A0A090UNP1_9ENTR/1-118   AC A0A090UNP1.1
#=GS C6XCZ0_METGS/1-120       AC C6XCZ0.1
#=GS I6H3J3_SHIFL/1-118       AC I6H3J3.1
#=GS A0A0N1K116_9ACTN/18-127  AC A0A0N1K116.1
#=GS YDIL_ECOLI/1-118         AC P76196.2
#=GS C0AVY6_9ENTR/1-111       AC C0AVY6.1
X2GUQ4_9GAMM/1-117                  ....MTNLELQAYRRFLMLKVSEASEY....IGKT-D......ASTWHNWEKGTVPVPQYVVTAMQELKKLRTDKVNII.........INSINDRVGSS.....TIRYFLTYEEFKKVNPELDIIQWRLHQSIATELYFRGLEKLC............................................................................
A0A077KDB8_9FLAO/1-135              ....MNGKKLKEIRKELGLTQTELAKL....IGRT-T......MRTVQNWESDKNAIPDYVDEFLKNEIHQRHT-----.........-----------.....------------------------------------------pnfvsnnsntdfknlsvddklnylfkqneqiikeneelkdmvddltlkieislapilrhfklnadskeknnnkssi
Q32FV5_SHIDS/10-127                 ....MNAYELQALRHIFAMTIDECATW....IAQTGD......SESWRQWENGKCAIPDCVVEQLLAMRQQRKKHLHAI.........IEKINNRIGNN.....TMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC............................................................................
Q6LJ18_PHOPR/6-128                  ....MNNVELQAIRKILMLEVTEAADV....IGNGVS......SNTWQSWESGSLAIPDEIQAEIYSLCQMRETLLGET.........FKELYDKNDGSfnavgTLRYYSTLNAFLIDYPESNHLCWRLHQSVCSSLFAEGGDVE-l...........................................................................
A0A0A7RZW3_9GAMM/1-117              ....MTNLELQAYRRYFMLKVAEASEF....IGNT-I......AEVWHNWEQGNSTIPTYVIETMKDLKKRRQDKIDAI.........IADINNRIGSN.....NIRYFLTFEDFKKVNPTLTVLDWRLHQSIATELYFRGLEVLC............................................................................
K0ESU4_9NOCA/9-122                  taag-----FRATRELLGLPVPWCARL....FAVA--......ERTVERWEKGAFQIPDTVARELAEIADETEQVVDAM.........VDAIGAGEISP.....RLHTYRTNDDYCRHEPGT-RYPATWHRAVCARVMA-------elpqvel.....................................................................
Q8ZPR1_SALTY/2-119                  ....MNALELQALRRIFDMTIEECTIY....ITQDNN......SATWQRWEAGDIPISPEIIARLKEMKARRQRRINAI.........VDKINNRIGNN.....TMRYFPDLSSFQSIYTEGDFIEWKIYQSVAAELFAHDLERLC............................................................................
#=GR Q8ZPR1_SALTY/2-119       SS    ....--HHHHHHHHHHTT--HHHHHHH....TSSS--......HHHHHHHHTTSS---HHHHHHHHHHHHHHHHHHHHH.........HHHHCCS-S--.....EEE--SSHHHHHTTSTT--HHHHHHHHHHHHHHHHTTS-EEE............................................................................
C0DT60_EIKCO/1-121                  ...m-FPIELKALRRNLGLTQAEAAQA....LAANVDfphgasAEEWAQWENGAAPIPLHVVRAVETRLNQKYQAIDQY.........AEQLEAQMQGGn..avVVLWYPEPNACP------DLASWRISQSVAGEVAAMGG----rvia........................................................................
J1QGW2_9ENTR/1-118                  ....MNAYELQALRHILAMSIEECATW....IAPDNT......AAEWQAWEKGEKAIPADIVEKLQALRKKRQSHINAL.........IQRINNRIGNN.....TMRFFVDLAAFRTVYHDGDYLDWKVYQSVAAELYAHDLEHLC............................................................................
A0A0G4JWD9_9ENTR/1-118              ....MNHLELQALRQIFFMSIDEASTY....IAGDEN......SERWRQWEKGEQDIPLSVIKILTLMNTKRKERINAI.........IEKINNRIGNN.....TMRFFPDYDAFRAVYIEGDYLEWKIYQSVAAELYSHNLERLC............................................................................
I6HIV9_SHIFL/1-118                  ....MNALELQAIRHIFAMTVEESAAY....IARDGD......IVAWQQWESGEKEIPENIARICAEMKAKRKLRINAI.........IEKINNRIGNN.....TMRFFPDLVSFQAVYHHDHFLDWKIYQSAAVELYAHNLERLC............................................................................
A0A090UNP1_9ENTR/1-118              ....MNALELQAIRHIFAMTVEESAMY....ISRDNN......VVVWQQWENGEKEIPEDIAHICQEMKARRKVRINAV.........IDKINNRIGNN.....TMRFFPDLNSFQAVYHHNDFLDWKIYQSAAVELYAHDLERLC............................................................................
C6XCZ0_METGS/1-120                  ....MNGTTLQALRLSLGYTPQEAA-Y....MVAAVP......LATWKNWESNAQPIPDEIENTLRKLVSYKRQLIEEArgqllhicnVQGMPESL---.....SLTYYGTETDWLT-QQDATALQWKPHCMAMAAL-AE------efpvi.......................................................................
I6H3J3_SHIFL/1-118                  ....MNAYELQALRHIFAMTIDECATW....IAQTGD......SESWRQWENGKCAIPDCVVEQLLAMRQQRKKHLHAI.........IEKINNRIGNN.....TMRFFPDLTAFQQVYPDGNFIDWKIYQSVAAELYAHDLERLC............................................................................
A0A0N1K116_9ACTN/18-127             ....MTPAELRVVREYLGLSPEWLAGH....LA--VS......ARTVRHWEAGKYAIPDGVRLAVEELEATTGRYVGAV.........VDQVMDLPDPA.....VVT-YRTDDEYRTADPDSPF----------------------paswhravvartaqevt...........................................................
YDIL_ECOLI/1-118                    ....MNAYELQALRHIFAMTIDECATW....IAQTGD......SESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAI.........IEKINNRIGNN.....TMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC............................................................................
C0AVY6_9ENTR/1-111                  ....MTNLELRQLRQLLFLSPSEASSE....IGRV-E......TRTWQRWEKGDRAIPYDVIQQMQMLSLTRLELLSVE.........ADHSH-----Y.....IYQYFDSLDEYVKAGGTHSVIKWRLSQSISAQLLSEK-----maei........................................................................
#=GC SS_cons                        ....--HHHHHHHHHHTT--HHHHHHH....TSSS--......HHHHHHHHTTSS---HHHHHHHHHHHHHHHHHHHHH.........HHHHCCS-S--.....EEE--SSHHHHHTTSTT--HHHHHHHHHHHHHHHHTTS-EEE............................................................................
#=GC seq_cons                       ....MNshELQAlR+lhuholsEsApa....Iupsss......upoWppWEsGcpsIPspVhctlpphpppRpptlsAl.........l-cIss+lsss.....ohRaFsshssFpps..csshlpW+laQSlAuELaAcsh-h..............................................................................
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