GenomeNet

Database: Pfam
Entry: DUF1870
LinkDB: DUF1870
Original site: DUF1870 
#=GF ID   DUF1870
#=GF AC   PF08965.9
#=GF DE   Domain of unknown function (DUF1870)
#=GF AU   Mistry J, Sammut SJ, Bateman A
#=GF SE   pdb_1s4k
#=GF GA   23.80 23.80;
#=GF TC   24.00 24.40;
#=GF NC   23.40 23.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   Domain_of_unknown_function
#=GF DR   INTERPRO; IPR015060;
#=GF CC   This domain is found in a set of hypothetical bacterial
#=GF CC   proteins. It contains a helix-turn-helix domain so may be a
#=GF CC   DNA-binding protein.
#=GF SQ   27
#=GS Q32FV5_SHIDS/10-127      AC Q32FV5.1
#=GS A0A0F7HBE2_SERFO/1-118   AC A0A0F7HBE2.1
#=GS Q6LJ18_PHOPR/6-128       AC Q6LJ18.1
#=GS Q1YXS1_9GAMM/6-128       AC Q1YXS1.1
#=GS K0ESU4_9NOCA/9-122       AC K0ESU4.1
#=GS G5LPH8_SALET/2-119       AC G5LPH8.1
#=GS X7ZGF1_MYCXE/1-110       AC X7ZGF1.1
#=GS A0A0C1SW62_9ACTN/16-124  AC A0A0C1SW62.1
#=GS A0A080KEL4_9GAMM/1-117   AC A0A080KEL4.1
#=GS V9H7W5_9NEIS/1-111       AC V9H7W5.1
#=GS A0A0K9ESZ0_9ACTO/10-76   AC A0A0K9ESZ0.1
#=GS A0A080K9A3_9GAMM/1-117   AC A0A080K9A3.1
#=GS YDIL_ECOLI/1-118         AC P76196.2
#=GS C0AVY6_9GAMM/1-111       AC C0AVY6.1
#=GS X2GUQ4_9GAMM/1-117       AC X2GUQ4.1
#=GS A0A0T9WD13_SALET/2-119   AC A0A0T9WD13.1
#=GS A0A143DDT7_9PROT/1-121   AC A0A143DDT7.1
#=GS A0A071M9Y6_9ENTR/1-118   AC A0A071M9Y6.1
#=GS A0A0A7RZW3_9GAMM/1-117   AC A0A0A7RZW3.1
#=GS Q8ZPR1_SALTY/2-119       AC Q8ZPR1.1
#=GS Q8ZPR1_SALTY/2-119       DR PDB; 1S4K A; 2-119;
#=GS Q8ZPR1_SALTY/2-119       DR PDB; 1S4K B; 2-119;
#=GS C0DT60_EIKCO/1-121       AC C0DT60.1
#=GS A0A106BHH3_THIDE/1-115   AC A0A106BHH3.1
#=GS A0A0D4C3C5_9MICC/11-123  AC A0A0D4C3C5.1
#=GS C6XCZ0_METGS/1-120       AC C6XCZ0.1
#=GS A0A0X3SX62_9ACTN/7-110   AC A0A0X3SX62.1
#=GS A0A0N1K116_9ACTN/18-127  AC A0A0N1K116.1
#=GS V3TS74_SERS3/1-118       AC V3TS74.1
Q32FV5_SHIDS/10-127                 ....MNAYELQALRHIFAMTIDECATW....IAQTGD......SESWRQWENGK..CAIPDCVVEQLLAMRQQRKKHLHAI.........IEKINNRIGNN.......TMRFFPDLTAFQRVYPDGNF.IDWKIYQSVAAELYAHDLERLC............................................
A0A0F7HBE2_SERFO/1-118              ....MNHLELQALRQLFFMTVEECATY....ISPDNN......LATWQQWERGE..SEIPDAIIDTFTKMIKKRKTHINAI.........IDKINNRIGNN.......TMRFFPDYASFLAVYPQGDY.LEWKIYQSVAAQLYAYDLERLC............................................
Q6LJ18_PHOPR/6-128                  ....MNNVELQAIRKILMLEVTEAADV....IGNGVS......SNTWQSWESGS..LAIPDEIQAEIYSLCQMRETLLGET.........FKELYDKNDGSfn..avgTLRYYSTLNAFLIDYPESNH.LCWRLHQSVCSSLFAEGGDVE-l...........................................
Q1YXS1_9GAMM/6-128                  ....MNHVELQAIRKILMLEVTEAADV....IGNGVS......SSTWQSWESGS..LAIPDEIQAEIYSLCQMRETLLGET.........FKELYDKNDGSfn..avgTLRFYSTLKAFLIDYPESNH.LCWRLHQSVCSSLFAEGGDVE-l...........................................
K0ESU4_9NOCA/9-122                  taag-----FRATRELLGLPVPWCARL....FAVA--......ERTVERWEKGA..FQIPDTVARELAEIADETEQVVDAM.........VDAIGAGEISP.......RLHTYRTNDDYCRHEPGT-R.YPATWHRAVCARVMA-------elpqvel.....................................
G5LPH8_SALET/2-119                  ....MNALELQALRRIFDMTIEECTIY....ITQDNN......SATWQRWEAGD..IPISPEIIARLKEMKARRQRRINAI.........VDKINNRIGNN.......TMRYFPDLSSFQSIYTEGDF.IEWKIYQSVAAELFAHDLERLC............................................
X7ZGF1_MYCXE/1-110                  ....MDGGELQTVREYLGLTIESLARM....L--DVN......PRTIRSWEAGR..DRIPERIRVEVEQIEAMTAKAVDEL.........VDVLNAARDP-.......AVYVYRRDEDMHAARPDTAH.LPARWWRHVVA-----------racqev......................................
A0A0C1SW62_9ACTN/16-124             ....MTDAEFKVVREYLGLTGDWLAAH....LG--VS......GRTVRHWEQGK..FPIPDGVRLAIEDLEARTGEFVDGV.........VAKLLDLPVD-.......GVVTYRTDEEYHAAHPESEF.----------------------paswhraviarvaqev............................
A0A080KEL4_9GAMM/1-117              ....MTNLELQAFRRFLMLKVSEASEY....IGKT-D......VETWRNWENDT..LPIPENVATAMKELKNLRSEKIQLI.........INSINDRVGSN.......TIRYFMTYQEFKKVNPELDV.IQWRLHQSIATELYFRGLEKLC............................................
V9H7W5_9NEIS/1-111                  ....MTPIELKNARILLGLKTNEAAVH....LGKM-S......LRGWQYLEKGE..RTINPDIIDNINALLNRRQEMIRDL.........IDTQGMNLNHV.......SVIYYSAPE-YCE-----NI.LEWRFTQSVARTLHFDFGA---kli.........................................
A0A0K9ESZ0_9ACTO/10-76              ....MTGLEFAAIRHRMNLSPVDLARL....LEI--D......TRSLRRWEAGK..LPIPAAMVARLRKLEGEHA------.........-----------.......--------------------.----------------------rlasdyaaal..................................
A0A080K9A3_9GAMM/1-117              ....MTNLELQAYRRFLMLKVSEASEY....IGKT-D......ASTWHNWEKGT..VPVPQYVVTAMQELKKFRTDKINII.........INSINDRVGSN.......TIRYFMTYEEFKKVNPELDI.IQWRLHQSIATELYFRGLEKLC............................................
YDIL_ECOLI/1-118                    ....MNAYELQALRHIFAMTIDECATW....IAQTGD......SESWRQWENGK..CAIPDRVVEQLLAMRQQRKKHLHAI.........IEKINNRIGNN.......TMRFFPDLTAFQRVYPDGNF.IDWKIYQSVAAELYAHDLERLC............................................
C0AVY6_9GAMM/1-111                  ....MTNLELRQLRQLLFLSPSEASSE....IGRV-E......TRTWQRWEKGD..RAIPYDVIQQMQMLSLTRLELLSVE.........ADHSH-----Y.......IYQYFDSLDEYVKAGGTHSV.IKWRLSQSISAQLLSEK-----maei........................................
X2GUQ4_9GAMM/1-117                  ....MTNLELQAYRRFLMLKVSEASEY....IGKT-D......ASTWHNWEKGT..VPVPQYVVTAMQELKKLRTDKVNII.........INSINDRVGSS.......TIRYFLTYEEFKKVNPELDI.IQWRLHQSIATELYFRGLEKLC............................................
A0A0T9WD13_SALET/2-119              ....MNALELQALRRIFDMTIEECTIY....ITQDNN......SATWQRWEAGD..TPISPEIIARLKEMKARRQRRINAI.........VDKINNRIGNN.......TMRYFPDLSSFQSIYTEGDF.IEWKIYQSVAAELFAHDLERLC............................................
A0A143DDT7_9PROT/1-121              ....MTPAELKTIRETLGLKAQWVAD-....-QAGVR......LRTAQYWETGR..MAVPADVASMLLDIDRALEDMVAQS.........LAKIEGTAAQHagaveviLLRYRTDKDLWEF-HPDLAP.LPASTHAAMLARL---------cralsars....................................
A0A071M9Y6_9ENTR/1-118              ....MNNLELQALRYLFFLSVKESATW....IAGDSD......TETWSQWESGE..KEIPEDIIVKMEALRLIRKERIAAI.........VHKINDRIGNN.......TMRYFTSFEDFLQVYPGGDF.LQWKLYQSAAAELFSRNLERLC............................................
A0A0A7RZW3_9GAMM/1-117              ....MTNLELQAYRRYFMLKVAEASEF....IGNT-I......AEVWHNWEQGN..STIPTYVIETMKDLKKRRQDKIDAI.........IADINNRIGSN.......NIRYFLTFEDFKKVNPTLTV.LDWRLHQSIATELYFRGLEVLC............................................
Q8ZPR1_SALTY/2-119                  ....MNALELQALRRIFDMTIEECTIY....ITQDNN......SATWQRWEAGD..IPISPEIIARLKEMKARRQRRINAI.........VDKINNRIGNN.......TMRYFPDLSSFQSIYTEGDF.IEWKIYQSVAAELFAHDLERLC............................................
#=GR Q8ZPR1_SALTY/2-119       SS    ....--HHHHHHHHHHTT--HHHHHHH....TSSS--......HHHHHHHHTTS..S---HHHHHHHHHHHHHHHHHHHHH.........HHHHCCS-S--.......EEE--SSHHHHHTTSTT--H.HHHHHHHHHHHHHHHTTS-EEE............................................
C0DT60_EIKCO/1-121                  ...m-FPIELKALRRNLGLTQAEAAQA....LAANVDfphgasAEEWAQWENGA..APIPLHVVRAVETRLNQKYQAIDQY.........AEQLEAQMQGGn....avVVLWYPEPNACP------DL.ASWRISQSVAGEVAAMGG----rvia........................................
A0A106BHH3_THIDE/1-115              ....MNPTELNTLRRSLWLTREQAGA-....-INGMT......DRSWRYLENGT..RPIPPDVQARMRKLDADANAMADIA.........WDEYGNLTGVN.......GIEWNQV-------------.----------------------eavllryagdadlaaahpdmaelpadlhaaaidr..........
A0A0D4C3C5_9MICC/11-123             ....MTAAELKVVREYLGLTREWCAEY....FDV--A......LRQWNRYESSE..TPIPARIREGMEHIEAETAENVGRY.........VEALEDATDVV.......VQT-YRVNADFWAKHPETTYsAQW--HRAVI------------arvaqevpglt.................................
C6XCZ0_METGS/1-120                  ....MNGTTLQALRLSLGYTPQEAA-Y....MVAAVP......LATWKNWESNA..QPIPDEIENTLRKLVSYKRQLIEEArgqllhicnVQGMPESL---.......SLTYYGTETDWLT-QQDATA.LQWKPHCMAMAAL-AE------efpvi.......................................
A0A0X3SX62_9ACTN/7-110              ....MTPAELKVVREFLGLTGDWLASH....LG--VS......PRTVRHWEQGK..YPIPDGVRLEVEDLERRTGEFVSGI.........IEQLMDLPDPG.......VLTYRDD-AEYHAAHPE---.----------------------ipfpaswnravvar..............................
A0A0N1K116_9ACTN/18-127             ....MTPAELRVVREYLGLSPEWLAGH....LA--VS......ARTVRHWEAGK..YAIPDGVRLAVEELEATTGRYVGAV.........VDQVMDLPDPA.......VVT-YRTDDEYRTADPDSPF.----------------------paswhravvartaqevt...........................
V3TS74_SERS3/1-118                  ....MNHLELQAMRQLFLLSVEEAALH....IAGDGN......TEQWLMWERGE..KEIPPSVIEKLSHLNKERKERINAI.........IKKINNRIGNN.......TMRSFIDFDAFLSVYTDGDF.LEWKVYQSVANELYSRDLERLC............................................
#=GC SS_cons                        ....--HHHHHHHHHHTT--HHHHHHH....TSSS--......HHHHHHHHTTS..S---HHHHHHHHHHHHHHHHHHHHH.........HHHHCCS-S--.......EEE--SSHHHHHTTSTT--H.HHHHHHHHHHHHHHHTTS-EEE............................................
#=GC seq_cons                       ....MsshELpAlRchLhLospEsApa....lutsss......scTWppWEsGc..hsIPsplhtplpclctp+pchlstl.........lcplssphsss.......shcaa.s.ppahth.P-tsh.lpW+haQSlsspLh....................................................
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