GenomeNet

Database: Pfam
Entry: DUF1878
LinkDB: DUF1878
Original site: DUF1878 
#=GF ID   DUF1878
#=GF AC   PF08963.7
#=GF DE   Protein of unknown function (DUF1878)
#=GF AU   Mistry J, Sammut SJ
#=GF SE   pdb_1sed
#=GF GA   20.90 20.90;
#=GF TC   21.60 21.40;
#=GF NC   20.40 20.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF DR   INTERPRO; IPR015058;
#=GF CC   This domain is found in a set of hypothetical bacterial
#=GF CC   proteins.
#=GF SQ   21
#=GS R6SZI0_9FIRM/65-180      AC R6SZI0.1
#=GS N0AR95_9BACI/3-111       AC N0AR95.1
#=GS G2TP34_BACCO/1-109       AC G2TP34.1
#=GS D5DIH1_BACMD/15-145      AC D5DIH1.1
#=GS A0A024QDU4_9BACI/4-109   AC A0A024QDU4.1
#=GS C4L3M8_EXISA/3-112       AC C4L3M8.1
#=GS U5L990_9BACI/3-111       AC U5L990.1
#=GS A0A059NWB8_9BACI/1-109   AC A0A059NWB8.1
#=GS C5D6L7_GEOSW/1-110       AC C5D6L7.1
#=GS Q81U43_BACAN/1-109       AC Q81U43.1
#=GS A0A075LHX8_9BACI/1-110   AC A0A075LHX8.1
#=GS Q65LS9_BACLD/1-110       AC Q65LS9.1
#=GS A0A075JL36_9BACI/20-124  AC A0A075JL36.1
#=GS Q81GY2_BACCR/1-109       AC Q81GY2.1
#=GS D5DAS8_BACMD/1-110       AC D5DAS8.1
#=GS B7GF05_ANOFW/1-109       AC B7GF05.1
#=GS Q5L292_GEOKA/1-110       AC Q5L292.1
#=GS A0A075QZK3_BRELA/3-44    AC A0A075QZK3.1
#=GS A7GLZ0_BACCN/1-109       AC A7GLZ0.1
#=GS A8FBL0_BACP2/1-109       AC A8FBL0.1
#=GS YHAI_BACSU/1-110         AC O07517.1
#=GS YHAI_BACSU/1-110         DR PDB; 1SED B; 4-110;
#=GS YHAI_BACSU/1-110         DR PDB; 1SED A; 4-110;
#=GS YHAI_BACSU/1-110         DR PDB; 1SED C; 4-110;
R6SZI0_9FIRM/65-180                 iskliaesntke-----------ELHNS-LAK.VYKKQATDFYKLLRPRYLRLKGLQESENTCTADEdKTMTAQKTEKVVYHDVLSVKLDELLDGKcnkdelaLIREAVIDATTK...QQLYIRMVKEFKK---e..................................................
N0AR95_9BACI/3-111                  ...........y-NALIDKIVQLEYHQKLLLK.MLSDTKLQFFKLVIEKSLREADVDAFFKLCDQLS.NDLKEQKAEGFVHFNPLFDKFKVNLHPN.......LQAEDVIRSCLA...QQLFTPLMTEFKKYI-...................................................
G2TP34_BACCO/1-109                  ............MESIEQKLERLEFYQTLLLK.MIGTSQYPFFRLIMEKQLSKQDIEQFYALCDRLS.DELKEQKADKFVYFYPLFQKFKESLHEK.......LQPAEVIAACLQ...QGLYPDLMKALKR---nl.................................................
D5DIH1_BACMD/15-145                 .........ldv----VKEVKLLKYQMSLMKH.MINAEEHPFFMFTIDHEFEENQVNAFLKILGVFS.YRIKGEEIFEWYQNDQLFSQFSLSLDK-.......------------...----------------lyasepptleelkmyvtkifyqefeleyllcslkkqfiqtevcdffleafk
A0A024QDU4_9BACI/4-109              ........yhea--------ETASFHLHLLSK.IMDMDKYPFTKLIIERNLTKAEYIELMDRLSLLN.QQFEVQTKEGLLDFSSLLLHFAGMLTEK.......LEPNQTIYALKE...EGVYPSLMETFITILK...................................................
C4L3M8_EXISA/3-112                  ..........ev--SLEEKVEHLAYQMKILLE.IVDWTDRPFEYEVIRANLTKQEVESFYQLLEEIR.AQQNEQLRYGYTSIEPLLVHFAGMLDVR.......LDVKTILEACVR...QGIALDVTEPL-----yrqvr..............................................
U5L990_9BACI/3-111                  .........ige---LLERIEKLEYHQKLLLM.MASGQTLPFYRMVVEKSLDQKEVTQFFYLCDKLS.KELEEQKAEGFVYFHPLYTEFKHKLHPS.......LKPEMVIPACLR...QNLFMDLMSELKKY--l..................................................
A0A059NWB8_9BACI/1-109              ........meke-----NHCETFTFQLKLLLD.VEEMKKYPFTKLIIEKNVTEKEYQHTLCLLKELN.HRYEEDMESGLIDHSSLLLHFAGMLCYK.......LPINETLCALHQ...EGFYLELTEQLIS---ysh................................................
C5D6L7_GEOSW/1-110                  ............MGTLEERIAKLEFHRSLLME.MVDETKKPFYYLVIKANLTKEEVDEVLALCEQLS.EEYEKQKAEGLTIFTPLLLHFAGMLHPS.......LPLEQTVDALLK...QQMFVPLMTELKKLMK...................................................
Q81U43_BACAN/1-109                  ...........m-D-VVRRLEQAEYYVDLLFK.MIDEEKCPFYSLIIKKKARKKDIERILNLCEILN.EQYVVEKAEGLLLFDALLDQFEKALPHQ.......LEVHETAEALAK...QGLFKPLMNEFLSMI-a..................................................
A0A075LHX8_9BACI/1-110              ..........me----EEKKSTLSFHLHLIAE.TGVLDKYPFRKLLIERNINEEEYAAVLKMLQRLN.RLYKEQKEEGLLDYTSLLLEFVGMMPEK.......LYYWDVLLALREekqDDTYKGLVDELI----lld................................................
Q65LS9_BACLD/1-110                  ............MNSMEQRLERLEYYIKLLLN.NADMEEYPYYKILIEKGLSEEEAKETEKLCEELS.KELEAQKAQGFVMFDHLLTLFAGQLNEK.......LEVHETIFALHR...QGLYKPLMSEFISIIR...................................................
A0A075JL36_9BACI/20-124             .......sdkgl----------AEFHLSLISR.IIDMRRYPFTRLIMERNITNPEYKELMKLLEDLD.DKYHTQRKEGLLDFSSLLIQFAGMLNEK.......LEPTETIYALNQ...EEIHKELMSEFMKIIQ...................................................
Q81GY2_BACCR/1-109                  ...........m-D-VVRRLEQAEYYVDLLFK.MIDEEKCPFYSLIIKKKARKKDIERILNLCEKLN.DQYVVEKAEGLLLFDALLDQFEKALPHQ.......LEVHETAEALAK...QGLFKPLMNEFLSMI-a..................................................
D5DAS8_BACMD/1-110                  ............METLESRVSRLEYYIKLLSG.TSEQEAKPFIDLVVRNQLTKKEVEEILILCEDTK.NEYIEQKAEGLTDFVPLLTQFVGMLNYK.......LTPRETVESLRY...QPSYQDVMNEFFEIIQ...................................................
B7GF05_ANOFW/1-109                  ...........m--SIEQRIEKLEYYCSLMLD.MIAPEKKPFYALVIRYGLEKEEVESILRLCEQLS.EQYKQQKEEGFVIFTSLFTQFANALHPN.......LPLAETIDALKQ...QQLFVPLMTEFQRLL-h..................................................
Q5L292_GEOKA/1-110                  ............MESLEKRVAKLEFHQSLLME.MIDETKKPFYSLIIRADLTKEEVDAFLAFCQELA.DQYEQQKAEGLTIFTPLLVQFAGMLHPN.......LPLEQTVDALLA...QQMFVPLMTELKTLIR...................................................
A0A075QZK3_BRELA/3-44               ...........k-EALEQRVERLEFYLNLMREfAVDPETFALWDYVISEGLNE--------------.----------------------------.......------------...----------------n..................................................
A7GLZ0_BACCN/1-109                  ...........m-D-VVKRLEQAEYYVELLFR.MIDEDKCPFYSLIIKKKARKKDVERILNLCEGLN.NQYVEEKKEGLLLFDALLDQFEKALPHQ.......LEVTETAEALLK...QGLFQPLMEEFLRII-a..................................................
A8FBL0_BACP2/1-109                  ...........m--SIEERMSQLEYYMELLLT.ATDMSRYPYYALLMRQQVSKEEAQEIERICAELS.EEMDKQKAQGYVMFDDMLALFAGQLIEK.......LDVHETIFALHD...QGLFQPLMNEFIKIIK...................................................
YHAI_BACSU/1-110                    ............MDSMDHRIERLEYYIQLLVK.TVDMDRYPFYALLIDKGLSKEEGEAVMRICDELS.EELATQKAQGFVTFDKLLALFAGQLNEK.......LDVHETIFALYE...QGLYQELMEVFIDIMK...................................................
#=GR YHAI_BACSU/1-110         SS    ............HHHHHHHTTS-TTT-HHHHH.HHTT--HHHHHHHHHHHHHHHHHHHHHHHTT---.HHHHHHHHHHS-TTS-HHHHHHHHHHTT.......HHHHHHHXXXXX...XXXXXXXXXXXXXXXX...................................................
#=GC SS_cons                        ............HHHHHHHTTS-TTT-HHHHH.HHTT--HHHHHHHHHHHHHHHHHHHHHHHTT---.HHHHHHHHHHS-TTS-HHHHHHHHHHTT.......HHHHHHHXXXXX...XXXXXXXXXXXXXXXX...................................................
#=GC seq_cons                       ...............l.p+lcpLEaahpLLhc.hl-.c+hPFapLlIc+sLsccElcphhpLC-pLs.cphcpQKtEGhlhFssLLspFsshLs.p.......Lpsp-Tl.ALhp...QslahsLMpEhhphh....................................................
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