GenomeNet

Database: Pfam
Entry: DUF3235
LinkDB: DUF3235
Original site: DUF3235 
#=GF ID   DUF3235
#=GF AC   PF11574.3
#=GF DE   Protein of unknown function (DUF3235)
#=GF AU   Pollington J
#=GF SE   pdb_3b4q
#=GF GA   21.10 21.10;
#=GF TC   21.90 22.10;
#=GF NC   20.90 20.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF DR   INTERPRO; IPR021630;
#=GF CC   Some members in this family of proteins with unknown function
#=GF CC   are annotated as RpfA however this cannot be confirmed.
#=GF SQ   59
#=GS D8KLC1_CORPF/116-206  AC D8KLC1.1
#=GS B1VIE3_CORU7/162-250  AC B1VIE3.1
#=GS D5NW71_CORAM/116-204  AC D5NW71.1
#=GS C2CMA7_CORST/116-202  AC C2CMA7.1
#=GS H2I6L1_CORDP/116-206  AC H2I6L1.1
#=GS F8DXE4_CORRG/169-260  AC F8DXE4.1
#=GS E6J5B2_9ACTO/124-207  AC E6J5B2.1
#=GS G2EQE5_CORGT/116-191  AC G2EQE5.1
#=GS C0WEX2_9CORY/116-199  AC C0WEX2.1
#=GS H2HQA2_CORDP/116-206  AC H2HQA2.1
#=GS G4QU50_CORPS/116-206  AC G4QU50.1
#=GS H2FQT2_CORPS/116-206  AC H2FQT2.1
#=GS D7WET8_9CORY/117-201  AC D7WET8.1
#=GS C8RW05_CORJE/117-207  AC C8RW05.1
#=GS I0DJA7_CORPS/116-206  AC I0DJA7.1
#=GS H2HZV2_CORDP/116-206  AC H2HZV2.1
#=GS H6M2G3_CORPS/116-206  AC H6M2G3.1
#=GS D9Q954_CORP2/116-206  AC D9Q954.1
#=GS H8LQV5_CORPS/116-206  AC H8LQV5.1
#=GS C0E837_9CORY/116-205  AC C0E837.1
#=GS Q4JX84_CORJK/117-207  AC Q4JX84.1
#=GS H2G8V1_CORDP/116-206  AC H2G8V1.1
#=GS G7U2R6_CORPS/116-206  AC G7U2R6.1
#=GS G0HD10_CORVD/117-197  AC G0HD10.1
#=GS H2H4E2_CORDP/116-206  AC H2H4E2.1
#=GS H2GXB3_CORDP/116-206  AC H2GXB3.1
#=GS G4QX80_CORPS/116-206  AC G4QX80.1
#=GS Q6M6W5_CORGL/116-192  AC Q6M6W5.1
#=GS Q8NS60_CORGL/122-198  AC Q8NS60.1
#=GS H2HRK8_CORDP/116-206  AC H2HRK8.1
#=GS E0DJ19_9CORY/116-205  AC E0DJ19.1
#=GS H2G7X9_CORDP/116-206  AC H2G7X9.1
#=GS G6WY21_CORGT/116-192  AC G6WY21.1
#=GS G0CXQ6_CORUB/116-206  AC G0CXQ6.1
#=GS C0VST9_9CORY/116-204  AC C0VST9.1
#=GS H2GFR7_CORDP/116-206  AC H2GFR7.1
#=GS C2GIE6_9CORY/116-204  AC C2GIE6.1
#=GS D7WFD4_9CORY/131-215  AC D7WFD4.1
#=GS C3PEV1_CORA7/116-215  AC C3PEV1.1
#=GS C0XQC5_9CORY/116-201  AC C0XQC5.1
#=GS D9Q742_CORP1/116-206  AC D9Q742.1
#=GS G0CP36_CORUL/116-206  AC G0CP36.1
#=GS E3F7V5_CORP9/116-206  AC E3F7V5.1
#=GS E4WDQ3_RHOE1/119-207  AC E4WDQ3.1
#=GS H5S0V5_9NOCA/132-221  AC H5S0V5.1
#=GS Q6NIK0_CORDI/116-206  AC Q6NIK0.1
#=GS Q6NIK0_CORDI/116-206  DR PDB; 3B4Q A; 117-206;
#=GS Q6NIK0_CORDI/116-206  DR PDB; 3B4Q B; 118-206;
#=GS Q8FR70_COREF/119-196  AC Q8FR70.1
#=GS H2GNW1_CORDP/116-206  AC H2GNW1.1
#=GS E2S586_9CORY/115-202  AC E2S586.1
#=GS H2HBD3_CORDP/116-206  AC H2HBD3.1
#=GS E9T1I5_COREQ/119-207  AC E9T1I5.1
#=GS E0MWE4_9CORY/116-199  AC E0MWE4.1
#=GS C4LHA5_CORK4/118-235  AC C4LHA5.1
#=GS C6R9W3_9CORY/115-202  AC C6R9W3.1
#=GS I0ARB5_CORPS/116-206  AC I0ARB5.1
#=GS G0I5S0_CORPS/116-206  AC G0I5S0.1
#=GS H6QY08_NOCCG/119-209  AC H6QY08.1
#=GS G7HZ63_9CORY/116-207  AC G7HZ63.1
#=GS H2HHX0_CORDP/116-206  AC H2HHX0.1
D8KLC1_CORPF/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKAVKDRLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTAM-g..................
B1VIE3_CORU7/162-250             GLNSAPTQRDVP.AKK-.AA.......PQ.ATA--..-KKAV.SQLAQQKDVL...........................AIDKVYQQIVERFE...AAGLAVPAPVEEFYKAHRV.NLNNHLNAHNARV-----aqaqqil............
D5NW71_CORAM/116-204             GLNSAPTDRSAP.APQP.SA.......PA.DAPAV..VQQSV.QNS--SSNEV...........................ASDQVYKLVVDTLN...SYGVQVPSVVTDAYNANRG.DFNAFYSANRGTIDPIL-a..................
C2CMA7_CORST/116-202             GLNSAATPRNLD.AAP-.AA.......PA.AAPAA..VKQAA.AQP---SDEL...........................AVDALYAFVEDTAA...KYGLSIPVEFANQYKANRH.DFNAFYSANRNFIDPI--aq.................
H2I6L1_CORDP/116-206             GLNSAPTPRDVV.ANA-.PA.......PV.QAAVA.gAQEYA.AQAGLNTEEL...........................AVDALYNAIKVRLA...GTGLGIPPQIEAFYQANRT.NFNGFYMANRGAIDFIFS...................
F8DXE4_CORRG/169-260             GLNSAPTPRTAA.AKPK.AA.......PKpAPAPA..VQKAV.KDLAAQKNTL...........................AVDAVWDKVVKRIE...AAGYSVPPQLTHFYKAHRH.QLNAFYNANKHAVHAVIP...................
E6J5B2_9ACTO/124-207             GLNSAPTPRDLS.AP-K.PA.......PA.PRPHA..--DTA.APA-APAEVS...........................AADHV-ATLKAFAE...SRGVFLP--ITEGYEANKA.AVDAAYAGNQDLVDGFV-a..................
G2EQE5_CORGT/116-191             GLNSAPTQRDLS.ATTStPE.......PA.-AAPA..VAEYN.APA---ANIAvgs....................tdlnTIKSTYGAVTGTLA...QYGITVPAEVESYYNA---.------------------fv.................
C0WEX2_9CORY/116-199             GLNSAPTERTAP.SAP-.--.......-A.EAPQP..VQQ--.-AVENKSDEL...........................AVDAVYNLIKDTAN...AYGLQLPAQFTDFYHANRH.DFDAFYSANRNVIDPV--aq.................
H2HQA2_CORDP/116-206             GLNSAPTPRDVV.ANA-.PA.......PV.QAAVA.gAQEYA.AQAGLNTEEL...........................AVDALYNAIKVRLA...GTGLGIPPQIEAFYQANRT.NFNGFYMANRGAIDFIFS...................
G4QU50_CORPS/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKAVKDRLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTAM-g..................
H2FQT2_CORPS/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKAVKDRLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTAM-g..................
D7WET8_9CORY/117-201             GLNSAPTPRTAP.AAK-.PA.......PA.PKP-A..----A.APQPKKNNEL...........................EVDKLYKSLTRELN...NRGLNVPPQVEATYKANRN.DYNAFYQANKDLIDALLS...................
C8RW05_CORJE/117-207             GLNSKPTPRNAA.AKPK.AK.......PA.APAPV..VQKAV.RDLSRNSNAL...........................AVDKFYDALVKRIE...ELGYSVPKEVTDYYNANKH.SLNHTYKQYSAQLQAVLP...................
I0DJA7_CORPS/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKAVKDRLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTAM-g..................
H2HZV2_CORDP/116-206             GLNSAPTPRDVV.ANA-.PA.......PV.QAAVA.gAQEYA.AQAGLNTEEL...........................AVDALYNAIKVRLA...GTGLGIPPQIEAFYQANRT.NFNGFYMANRGAIDFIFS...................
H6M2G3_CORPS/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKAVKDRLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTAM-g..................
D9Q954_CORP2/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKAVKDRLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTAM-g..................
H8LQV5_CORPS/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKAVKDRLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTAM-g..................
C0E837_9CORY/116-205             GLNSAPTPRDTV.SNA-.PS.......PV.QQAVE..NAIAN.AQNDAQANTL...........................ASDAVYNLVKDRLA...SYGIQVPGEVHAFYTANRG.DFNAFYTANRQIIDTA--vr.................
Q4JX84_CORJK/117-207             GLNSKPTPRNAA.AKPK.AK.......PA.APAPV..VQKAV.RDLSRNSNAL...........................AVDKFYDALVKRIE...ELGYSVPKEVTDYYNANKH.SLNHTYKQYSAQLQAVLP...................
H2G8V1_CORDP/116-206             GLNSAPTPRDVV.ANA-.PA.......PV.QAAVA.gAQEYA.AQAGLNTEEL...........................AVDALYNAIKVRLA...GTGLGIPPQIEAFYQANRT.NFNGFYMANRGAIDFIFS...................
G7U2R6_CORPS/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKAVKDRLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTAM-g..................
G0HD10_CORVD/117-197             GLSSAPTERSA-.----.--.......P-.AAAPA..SQNQV.QQLNAADDVL...........................EIDAVWKQLNDEAA...ARGIAVPKEVTDAYNANRN.ALNDQYSAA---------ldgfnaa............
H2H4E2_CORDP/116-206             GLNSAPTPRDVV.ANA-.PA.......PV.QAAVA.gAQEYA.AQAGLNTEEL...........................AVDALYNAIKVRLA...GTGLGIPPQIEAFYQANRT.NFNGFYMANRGAIDFIFS...................
H2GXB3_CORDP/116-206             GLNSAPTPRDVV.ANA-.PA.......PV.QAAVA.gAQEYA.AQAGLNTEEL...........................AVDALYNAIKVRLA...GTGLGIPPQIEAFYQANRT.NFNGFYMANRGAIDFIFS...................
G4QX80_CORPS/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKAVKDRLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTAM-g..................
Q6M6W5_CORGL/116-192             GLNSAPTQRDLS.ATTStPE.......PA.AAAPA..VAEYN.APA---ANIAvgs....................tdlnTIKSTYGAVTGTLA...QYGITVPAEVESYYNA---.------------------fv.................
Q8NS60_CORGL/122-198             GLNSAPTQRDLS.ATTStPE.......PA.AAAPA..VAEYN.APA---ANIAvgs....................tdlnTIKSTYGAVTGTLA...QYGITVPAEVESYYNA---.------------------fv.................
H2HRK8_CORDP/116-206             GLNSAPTPRDVV.ANA-.PA.......PV.QAAVA.gAQEYA.AQAGLNTEEL...........................AVDALYNAIKVRLA...GTGLGIPPQIEAFYQANRT.NFNGFYMANRGAIDFIFS...................
E0DJ19_9CORY/116-205             GLNSAPTPRDTV.SNA-.PS.......PV.QQAVE..NAIAN.AQNDAQANTL...........................ASDAIYGLVKDRLA...SYGIQVPGEVHAFYTANRG.DFNAFYTANRQIIDTA--vr.................
H2G7X9_CORDP/116-206             GLNSAPTPRDVV.ANA-.PA.......PV.QAAVA.gAQEYA.AQAGLNTEEL...........................AVDALYNAIKVRLA...GTGLGIPPQIEAFYQANRT.NFNGFYMANRGAIDFIFS...................
G6WY21_CORGT/116-192             GLNSAPTQRDLS.ATTStPE.......PA.AAAPA..VAEYN.APA---ANIAvgs....................tdlnTIKSTYGAVTGTLA...QYGITVPAEVESYYNA---.------------------fv.................
G0CXQ6_CORUB/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKVVKERLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTVMG...................
C0VST9_9CORY/116-204             GLNSAPTPRNAP.SNES.SA.......LE.STENI..VEEVV.QSS--SDDKL...........................PVDVLFNLVVNRLA...AVGIQVPAEVHGMYDFHRQ.DIQNFYAANAQFIDAN--lp.................
H2GFR7_CORDP/116-206             GLNSAPTPRDVV.ANA-.PA.......PV.QAAVA.gAQEYA.AQAGLNTEEL...........................AVDALYNAIKVRLA...GTGLGIPPQIEAFYQANRT.NFNGFYMANRGAIDFIFS...................
C2GIE6_9CORY/116-204             GLNSAPTPRNAP.SNES.SA.......LE.STENI..VEEVV.QSS--SDDKL...........................PVDVLFNLVVNRLA...AVGIQVPAEVHGMYDFHRQ.DIQNFYAANAQFIDAN--lp.................
D7WFD4_9CORY/131-215             GLNSAPTPRTAP.AAK-.PA.......PA.PKP-A..----A.APQPKKNNEL...........................EVDKLYKSLTRELN...NRGLNVPPQVEATYKANRN.DYNAFYQANKDLIDALLS...................
C3PEV1_CORA7/116-215             GLNSAPTPRNVS.AAPA.PAatqvkeeTA.PQAPA.eAPKAVhEAAEEPTDEL...........................AVDALYTLIEDTAT...QYGLTIPASFTEQYKANRH.DFNAFYSANRHVID----plaq...............
C0XQC5_9CORY/116-201             GLNSAPTNRDAQ.AAPA.PA.......PA.PAAAP..-----.APAAAPSAAP...........................QVDALYHAIVARLN...ENNIAVPAELHTAYAANRD.DYSNFYLANKALIDAVL-a..................
D9Q742_CORP1/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKAVKDRLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTAM-g..................
G0CP36_CORUL/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKVVKERLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTVMG...................
E3F7V5_CORP9/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKAVKDRLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTAM-g..................
E4WDQ3_RHOE1/119-207             GLSSAPSQRSVP.ATPA.PA.......PV.TPAPV..ATTPA.APAAPSAVQA...........................AFAGI-DALLDAAA...NNGIVIHQDVLNAYDAAKSfDFNQVAMQNIAGI-----anq................
H5S0V5_9NOCA/132-221             GLSSAPTPRSAP.TTSE.TP.......RW.NPEPA..PQAAQ.AAPD------...........................STQEVFNAVDRALAvvqGQGVQVPKEAFDFFNAAKA.S-----------------gtkldpnivnfyeankgll
Q6NIK0_CORDI/116-206             GLNSAPTPRDVV.ANA-.PA.......PV.QAAVA.gAQEYA.AQAGLNTEEL...........................AVDALYNAIKVRLA...GTGLGIPPQIEAFYQANRT.NFNGFYMANRGAIDFIFS...................
#=GR Q6NIK0_CORDI/116-206  SS    XXTTS--HHHHT.TTS-.-H.......HH.HHHHH.HHHHHH.HHHT--HHHH...........................HHHHHHHHHHHHHH...TTT----HHHHHHHHCTTT.-HHHHHHHTHHHHHHHCH...................
Q8FR70_COREF/119-196             GLNSAPTPRNLN.PAPA.PA.......PA.PAAPA..--EYR.ATVDTNTNPVvgs....................sdlnTVQGIYDAVSGTLA...QYGVQVPAEIQAHYNA---.------------------fig................
H2GNW1_CORDP/116-206             GLNSAPTPRDVV.ANA-.PA.......PV.QAAVA.gAQEYA.AQAGLNTEEL...........................AVDALYNAIKVRLA...GTGLGIPPQIEAFYQANRT.NFNGFYMANRGAIDFIFS...................
E2S586_9CORY/115-202             GLNSAPTQRTAP.SAAP.KA.......PA.QAPAP..VKQAA.AQK---SDEL...........................AVDALYNTIKNAAN...SYGLALPAQFTELYKANRH.DFNNFYSANRNIIDPI--aq.................
H2HBD3_CORDP/116-206             GLNSAPTPRDVV.ANA-.PA.......PV.QAAVA.gAQEYA.AQAGLNTEEL...........................AVDALYNAIKVRLA...GTGLGIPPQIEAFYQANRT.NFNGFYMANRGAIDFIFS...................
E9T1I5_COREQ/119-207             GLSSAPSQRSVP.ATPA.PA.......PV.TPAPV..ATTPA.APAAPSAVQA...........................AFAGI-DALLDAAA...NNGIVIHQDVLNAYDAAKSfDFNQVAMQNIAGI-----anq................
E0MWE4_9CORY/116-199             GLNSAPTERTAP.SAP-.--.......-A.EAPQP..VQQ--.-AVENKSDEL...........................AVDAVYNLVKDTAN...AYGLQLPAQFTDFYHANRH.DFNAFYSANRNVIDPV--aq.................
C4LHA5_CORK4/118-235             GLSSAPSQRDNAyANGA.QA.......AV.QPAAA..PVEEA.APAENAAPAAqapadvadeaptpqkavtdlaatqsiaSLDQVFDAIQAAFN...KAGIPMPAVITDYYHAHHD.ELVGAYNQAIG-------aavngy.............
C6R9W3_9CORY/115-202             GLNSAPTQRTAP.SAAP.KA.......PA.QAPAP..VKQAA.AQK---SDEL...........................AVDALYNTIKNAAN...SYGLALPAQFTELYKANRH.DFNNFYSANRNIIDPI--aq.................
I0ARB5_CORPS/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKAVKDRLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTAM-g..................
G0I5S0_CORPS/116-206             GLNSAPTPRDSV.ASA-.PA.......PL.QQIVD.dAQNYA.AASGQNADKL...........................AVDAVYKAVKDRLA...GYGIGVHPEIDAFYQANNN.NFDAFYQANRQVIDTAM-g..................
H6QY08_NOCCG/119-209             GLSSGPTQRSVP.AESE.SP.......RW.QPTPQ..QQAAP.QQAAADSSQQ...........................VFDAVDRAIAVV-Q...AQGVQVPQQALDVFNAAKA.N-----------------gtkldpavvnffeankgl.
G7HZ63_9CORY/116-207             GLNSAPTERTAP.SQES.SA.......PA.VPADApaAVQQS.AQ-NSSSDEV...........................ASDAVYSLVVDTLS...NYGVQVPSVVTEAYKANRS.DFNAFYSANRGTIDPIV-a..................
H2HHX0_CORDP/116-206             GLNSAPTPRDVV.ANA-.PA.......PV.QAAVA.gAQEYA.AQAGLNTEEL...........................AVDALYNAIKVRLA...GTGLGIPPQIEAFYQANRT.NFNGFYMANRGAIDFIFS...................
#=GC SS_cons                     XXTTS--HHHHT.TTS-.-H.......HH.HHHHH.HHHHHH.HHHT--HHHH...........................HHHHHHHHHHHHHH...TTT----HHHHHHHHCTTT.-HHHHHHHTHHHHHHHCH...................
#=GC seq_cons                    GLNSAPTPRDss.Ass..PA.......Ps.pssss..sQphA.Asuu.su-cL...........................AVDAlYsAlcsRLA...uhGluVPsplcuaYpAN+s.sFsuFYtANRtsIDhhh.h..................
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