GenomeNet

Database: Pfam
Entry: DUF3235
LinkDB: DUF3235
Original site: DUF3235 
#=GF ID   DUF3235
#=GF AC   PF11574.6
#=GF DE   Protein of unknown function (DUF3235)
#=GF AU   Pollington J
#=GF SE   pdb_3b4q
#=GF GA   21.10 21.10;
#=GF TC   21.10 21.20;
#=GF NC   20.80 20.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF DR   INTERPRO; IPR021630;
#=GF CC   Some members in this family of proteins with unknown function
#=GF CC   are annotated as RpfA however this cannot be confirmed.
#=GF SQ   48
#=GS U7L6Y8_9CORY/116-196      AC U7L6Y8.1
#=GS A0A0B5D5W8_9CORY/115-194  AC A0A0B5D5W8.1
#=GS W5XZT0_9CORY/115-194      AC W5XZT0.1
#=GS A0A0F6QV76_9CORY/116-196  AC A0A0F6QV76.1
#=GS Q0S6U3_RHOJR/119-193      AC Q0S6U3.1
#=GS A0A0G3GMZ5_9CORY/115-198  AC A0A0G3GMZ5.1
#=GS B1VIE3_CORU7/162-245      AC B1VIE3.1
#=GS C4LHA5_CORK4/147-233      AC C4LHA5.1
#=GS A0A097IEE9_9CORY/117-197  AC A0A097IEE9.1
#=GS A0A0B6TRQ5_9CORY/116-205  AC A0A0B6TRQ5.1
#=GS D9Q954_CORP2/116-203      AC D9Q954.1
#=GS C3PEV1_CORA7/116-212      AC C3PEV1.1
#=GS F8DXE4_CORRG/169-257      AC F8DXE4.1
#=GS V9XLE3_9NOCA/119-190      AC V9XLE3.1
#=GS E6J5B2_9ACTN/124-204      AC E6J5B2.1
#=GS A0A0G3H0D4_9CORY/127-212  AC A0A0G3H0D4.1
#=GS D7WET8_9CORY/117-198      AC D7WET8.1
#=GS C0XQC5_9CORY/116-198      AC C0XQC5.1
#=GS X5DUN7_9CORY/117-202      AC X5DUN7.1
#=GS A0A059MVL5_9NOCA/119-196  AC A0A059MVL5.1
#=GS C2CMA7_CORST/116-199      AC C2CMA7.1
#=GS G0HD10_CORVD/117-196      AC G0HD10.1
#=GS W5WWQ5_9CORY/117-205      AC W5WWQ5.1
#=GS RPF1_CORGL/116-192        AC Q6M6W5.1
#=GS A0A0G3H447_9CORY/116-196  AC A0A0G3H447.1
#=GS Q8FR70_COREF/119-195      AC Q8FR70.1
#=GS W5XV93_9CORY/116-204      AC W5XV93.1
#=GS M7X3P7_RHOT1/8-95         AC M7X3P7.1
#=GS U7MLK3_9CORY/116-218      AC U7MLK3.1
#=GS U3GYH4_9CORY/116-200      AC U3GYH4.1
#=GS D7WFD4_9CORY/131-212      AC D7WFD4.1
#=GS H6QY08_NOCCG/119-210      AC H6QY08.1
#=GS M1NQM7_9CORY/116-213      AC M1NQM7.1
#=GS S5TH34_9CORY/116-204      AC S5TH34.1
#=GS A0A076NQC3_9CORY/118-207  AC A0A076NQC3.1
#=GS C2GIE6_9CORY/116-201      AC C2GIE6.1
#=GS W5T8I0_9NOCA/119-213      AC W5T8I0.1
#=GS E0DJ19_9CORY/116-202      AC E0DJ19.1
#=GS G0T262_RHOG2/547-634      AC G0T262.1
#=GS A0A075TUC5_9CORY/120-179  AC A0A075TUC5.1
#=GS A0A0D5ABR0_9NOCA/119-203  AC A0A0D5ABR0.1
#=GS E9T1I5_RHOHA/119-206      AC E9T1I5.1
#=GS Q0S105_RHOJR/119-193      AC Q0S105.1
#=GS A0A0F6TDS3_9CORY/116-195  AC A0A0F6TDS3.1
#=GS Q5Z259_NOCFA/119-206      AC Q5Z259.1
#=GS K0ESL9_9NOCA/119-208      AC K0ESL9.1
#=GS Q4JX84_CORJK/117-204      AC Q4JX84.1
#=GS Q6NIK0_CORDI/116-203      AC Q6NIK0.1
#=GS Q6NIK0_CORDI/116-203      DR PDB; 3B4Q A; 117-203;
#=GS Q6NIK0_CORDI/116-203      DR PDB; 3B4Q B; 118-203;
U7L6Y8_9CORY/116-196                 .........GLNSAPTERT....APSA.................--PAAAPQPV....QQ.AVE--.----NK.SDELAVDAVYN........LIKDTANAYGLQLPAQFTDFYH..........ANRH.......D.......FNAFYSANRNVID-p..................
A0A0B5D5W8_9CORY/115-194             .........GLNSAPTPRN....LSAPapsaapaatpaaaqyvaPVAAQAEAAK....AL.PAEVA.ALLPAG.SSETVTPDVYE........LIREQALQYGITLP--------..........----.......-.......--------------r..................
W5XZT0_9CORY/115-194                 .........GLNSASTPRS....VVGS.................-APAQVQAIV....AS.AGD--.------.SSEAASDAVYN........ALKGRFSAMGMPMPAQVDSFYN..........AYRG.......D.......FNTFYTANRETIDT...................
A0A0F6QV76_9CORY/116-196             .........GLNSAPTPRT....APSA.................--PASAPAPV....QQ.AAS--.----QS.SDELAVDALYN........LVKDTAAAYGLQLPEPLTEAYK..........ANRH.......D.......FNAFYKANRNVID-p..................
Q0S6U3_RHOJR/119-193                 .........GLSSAPTQRT....APAT.................VPEAPAAPAL....PD.LTGGVpSTNGTS.QYAGAVDNAIE........AVKA----QGIAIDPQILQLID..........ANKG.......-.......--------------llpq...............
A0A0G3GMZ5_9CORY/115-198             .........GLNAGPTQRN....VSAP.................-APAPAPAPA....TP.AAVAY.DAPAAPiAAPTAAEAALE........KIKAFFAQYGIVLPQQALDYYA..........ANTG.......Q.......IDALL---------ssgq...............
B1VIE3_CORU7/162-245                 .........GLNSAPTQRD....VPAK.................-----KAAPQ....AT.AKKAV.SQLAQQ.KDVLAIDKVYQ........QIVERFEAAGLAVPAPVEEFYK..........AHRV.......N.......LNNHLNAHNARV--aq.................
C4LHA5_CORK4/147-233                 ........e---AAPAENA....APAA.................QAPADVADEA....PT.PQKAV.TDLAAT.QSIASLDQVFD........AIQAAFNKAGIPMPAVITDYYH..........AHHD.......E.......LVGAYNQAIG----aavn...............
A0A097IEE9_9CORY/117-197             .........GLNSAPTQRT....APAA................tPAPAPVAQII....Q-.-----.---AAA.SDDLAVDALYN........VVADTLGQYGIAIPAEVKTAYE..........ANRH.......D.......VNAFYTANRGVID-q..................
A0A0B6TRQ5_9CORY/116-205             .........GLNSAPTPRD....ASAA................sAAPAQVQQVV....AK.SEATT.SAAGTS.SDELAVDALFN........LVSDTLAQYGAPVPAGLEAAYN..........ANRH.......N.......FDAFYGANRGAID-s..................
D9Q954_CORP2/116-203                 .........GLNSAPTPRD....SVAS.................-APAPLQQIV....DD.AQNYA.AASGQN.ADKLAVDAVYK........AVKDRLAGYGIGVHPEIDAFYQ..........ANNN.......N.......FDAFYQANRQVIDT...................
C3PEV1_CORA7/116-212                 .........GLNSAPTPRN....VSAApapaatq...vkeetapQAPAEAPKAV....HE.AAE--.----EP.TDELAVDALYT........LIEDTATQYGLTIPASFTEQYK..........ANRH.......D.......FNAFYSANRHVID-p..................
F8DXE4_CORRG/169-257                 .........GLNSAPTPRT....AAAK.................PKAAPKPAPA....PA.VQKAV.KDLAAQ.KNTLAVDAVWD........KVVKRIEAAGYSVPPQLTHFYK..........AHRH.......Q.......LNAFYNANKHAVH-a..................
V9XLE3_9NOCA/119-190                 .........GLSSAPTQRS....VDAA.................PAETPAPAIQ....NA.VPQLP.ETPAVP.AEVQGILAGFE........QGVTALQDAGVELDPNILDAV-..........----.......-.......--------------rav................
E6J5B2_9ACTN/124-204                 .........GLNSAPTPRD....LSAP.................-KPAPAPRPH....AD.TAA--.--PAAP.AEVSAADHV-A........TLKAFAESRGVFLP--ITEGYE..........ANKA.......A.......VDAAYAGNQDLVD-g..................
A0A0G3H0D4_9CORY/127-212             .........GLNSAPTPRN....VVNG.................-APQAVVQAV....EN.AVA--.ASSESE.ASQRASDAVYK........LLEARLASYGVAVPAEVQAFYT..........AHGD.......D.......FNAFYTANREVIDT...................
D7WET8_9CORY/117-198                 .........GLNSAPTPRT....APAA................kPAPAPKPAAA....PQ.PKK--.------.NNELEVDKLYK........SLTRELNNRGLNVPPQVEATYK..........ANRN.......D.......YNAFYQANKDLIDA...................
C0XQC5_9CORY/116-198                 .........GLNSAPTNRD....AQAA.................PAPAPAPAAA....PA.PAA--.----AP.SAAPQVDALYH........AIVARLNENNIAVPAELHTAYA..........ANRD.......D.......YSNFYLANKALIDA...................
X5DUN7_9CORY/117-202                 .........GLSSAPEQRS....APAA.................--PATDN-YA....AN.PQEAA.ADLSSQ.TDSLAIDGVWE........KVTEAFAANGIEVPSELESLYK..........DNRA.......A.......LNDNYTGAIKQ---aea................
A0A059MVL5_9NOCA/119-196             .........GLSSAPTQRS....APSTsa.............dtLAGVDVDEPA....AP.VLKAT.PPVVTP.LPQQSARAGWT........NGVEALRAAGIPVDQGFVDAVN..........A---.......-.......--------------alp................
C2CMA7_CORST/116-199                 .........GLNSAATPRN....LDAA................pAAPAAAPAAV....KQ.A----.--AAQP.SDELAVDALYA........FVEDTAAKYGLSIPVEFANQYK..........ANRH.......D.......FNAFYSANRNFID-p..................
G0HD10_CORVD/117-196                 .........GLSSAPTERS....APAA.................-APA------....--.SQNQV.QQLNAA.DDVLEIDAVWK........QLNDEAAARGIAVPKEVTDAYN..........ANRN.......A.......LNDQYSAAL-----dgfna..............
W5WWQ5_9CORY/117-205                 .........GLNSAPTPRT....APGR.................PAAAPAPAAA....AT.PAAAN.QQLAQA.ATVGQLDDIYN........GIVAQARNAGVAVPQQVTDLYQ..........SLRA.......Q.......LSNAVAPVAGQVQ-g..................
RPF1_CORGL/116-192                   .........GLNSAPTQRD....LSATtst...........pepAAAAPAVAEY....NA.PA--A.NIAVGS.TDLNTIKSTYG........AVTGTLAQYGITVPAEVESYYN..........A---.......-.......--------------fv.................
A0A0G3H447_9CORY/116-196             .........GLNSAPTPRN....IAAD.................-APAAVQQIV....EQ.AGA--.-----S.SEALAVDAVYN........AIQANLAQFGVQVPSGLEAAYN..........ANRG.......N.......FDAFYGANRHIID-p..................
Q8FR70_COREF/119-195                 .........GLNSAPTPRN....LNPA.................PAPAPAPAAPaeyrAT.VDTNT.NPVVGS.SDLNTVQGIYD........AVSGTLAQYGVQVPAEIQAHYN..........A---.......-.......--------------fi.................
W5XV93_9CORY/116-204                 .........GLNSAPTERT....APSQes............sapAVPADAPAAV....QQ.AAQ--.---NSS.SDEVASDAVYS........LVVDTLSNYGVQVPSVVTEAYK..........ANRS.......D.......FNAFYSANRGTID-p..................
M7X3P7_RHOT1/8-95                    attpistps----------....---Rt..............stPTPAQPEPES....PT.RQALT.AAQGLE.KEVASVMAGFG........SFWGRVKKQGTAALQTAEKQYE..........AARA.......D.......FTPLLTQARSQLD-h..................
U7MLK3_9CORY/116-218                 .........GLNSAPNLDRapngAAAA.................PAPAPAQPAQ....YA.GQRAA.AAPTGG.NEFQAIDDLYQ........RIEAALANYGLAIPAPIADAYQhalaqakgaiAGAP.......S.......LESFYQANAGAID-s..................
U3GYH4_9CORY/116-200                 .........GLSSAPTLRD....VQAA.................----PAVQAV....ER.AVERA.VEASSE.TSSLPSDALFK........QLQDAFNRAGIQMPAFITSYYN..........ANRS.......E.......FNNFYNANRGTIEA...................
D7WFD4_9CORY/131-212                 .........GLNSAPTPRT....APAA................kPAPAPKPAAA....PQ.PKK--.------.NNELEVDKLYK........SLTRELNNRGLNVPPQVEATYK..........ANRN.......D.......YNAFYQANKDLIDA...................
H6QY08_NOCCG/119-210                 .........GLSSGPTQRS....VPAE.................-SESPRWQPT....PQ.QQAAP.QQAAAD.SSQQVFDAVDR........AI-AVVQAQGVQVPQQALDVFN..........AAKA.......N.......--------------gtkldpavvnffeankgll
M1NQM7_9CORY/116-213                 .........GLNSAPTPRD....VSASspaq........saaasAAPSQVQYVA....TQ.AEEQA.AATGGS.SDALAVDALYT........LLRDTLAQYGVVVPDFVEDIYN..........ANRG.......D.......FDAFYNANRAYID-s..................
S5TH34_9CORY/116-204                 .........GLNSAPTPRT....APTAtq............slpAANAPVQMMA....AN.VAA--.---GQT.TDELAVDALFE........LLKDTAAEYGVDVPAPVVDFYN..........ANRH.......D.......FNAFYAASRGEVDA...................
A0A076NQC3_9CORY/118-207             .........GLNSAPTNRD....AQAA................qAAPAPAPAPA....PA.AAEAA.APAAQQ.DTTLAVDQLYK........QIVANLNNAGIGVPAQVHTTYA..........ANRH.......D.......YNAFYKANQPLIDA...................
C2GIE6_9CORY/116-201                 .........GLNSAPTPRN....APSN.................--ESSALEST....EN.IVEEV.VQ-SSS.DDKLPVDVLFN........LVVNRLAAVGIQVPAEVHGMYD..........FHRQ.......D.......IQNFYAANAQFIDA...................
W5T8I0_9NOCA/119-213                 .........GLHGSATQRD....VPAS.................--PSQSPQWQ....PAaPERAA.TQQAPA.DGNQQVYSAVD........KAVTAAQAQGVQLPQPALDAYN..........AFKA.......SgakldpsIVNFYQANKG----llpn...............
E0DJ19_9CORY/116-202                 .........GLNSAPTPRD....TVSN.................-APSPVQQAV....EN.AIA-N.AQNDAQ.ANTLASDAIYG........LVKDRLASYGIQVPGEVHAFYT..........ANRG.......D.......FNAFYTANRQIIDT...................
G0T262_RHOG2/547-634                 .......pi---STPSRTS....TPTP.................AQPSSAAEPE....SP.TRPAT.AAQGLE.KEVASVMAGFG........SFWGRVKKQGTAALQTAEKQYE..........AARA.......D.......FTPLLTQARSQLD-h..................
A0A075TUC5_9CORY/120-179             ....apsps----------....----.................----------....--.-----.---QDT.SDTLAVDRLYQ........QIVDSLASVGISVPEPVHAFYK..........AYRH.......D.......FQAFYSANAETI--sr.................
A0A0D5ABR0_9NOCA/119-203             .........GLNSAPTERS....VPVT.................PKAPEVPALP....DL.TSIPA.VDSSAE.VVEGIVTAVQNitndpqiaAFVQN-AAQGIQLDPQIVNFYQ..........ANKA.......-.......--------------flpq...............
E9T1I5_RHOHA/119-206                 .........GLSSAPSQRS....VPAT.................--PAPAPVTP....AP.VATTP.AAPAAP.SAVQAAFAGID........ALLDAAANNGIVIHQDVLNAYD..........AAKS......fD.......FNQVAMQNIAGI--an.................
Q0S105_RHOJR/119-193                 .........GLSSAPTQRT....APAT.................VPEAPAAPAL....PD.LTGGV.PSTNGTsQYAGVVDNAIE........AV----KAQGIAIDPQILQLID..........ANKG.......-.......--------------llpq...............
A0A0F6TDS3_9CORY/116-195             .........GLNSAPTPRD....IVVN.................-APAPVQEIV....LS.AEQ--.------.NSSNASDAIYD........ALKGRLATFGMSVPAEVESFYQ..........TNRE.......D.......FNTFYNANKETID-g..................
Q5Z259_NOCFA/119-206                 .........GLKSSATPRE....VPSA.................-PETPRWNPA....QP.APQ--.---AAP.DANQELFQAVD........RAIATVQQQGVQIPQPALDFFN..........AAKA.......N.......N-------------vqldphvvnffeankgll.
K0ESL9_9NOCA/119-208                 .........GLSSAPTPRS....APTT.................---SETPRWN....PE.PAPQ-.AAQAAP.DSTQEVFNAVD........RALAVVQGQGVQVPKEAFDFFN..........AAKAsgtkldpN.......IVNFYEANKG----ll.................
Q4JX84_CORJK/117-204                 .........GLNSKPTPRN....AAAK.................-PKAKPAAPA....PV.VQKAV.RDLSRN.SNALAVDKFYD........ALVKRIEELGYSVPKEVTDYYN..........ANKH.......S.......LNHTYKQYSAQLQ-a..................
Q6NIK0_CORDI/116-203                 .........GLNSAPTPRD....VVAN.................-APAPVQAAV....AG.AQEYA.AQAGLN.TEELAVDALYN........AIKVRLAGTGLGIPPQIEAFYQ..........ANRT.......N.......FNGFYMANRGAID-f..................
#=GR Q6NIK0_CORDI/116-203      SS    .........XXTTS--HHH....HTTT.................-S-HHHHHHH....HH.HHHHH.HHHT--.HHHHHHHHHHH........HHHHHHHTTT----HHHHHHHH..........CTTT.......-.......HHHHHHHTHHHHH-H..................
#=GC SS_cons                         .........XXTTS--HHH....HTTT.................-S-HHHHHHH....HH.HHHHH.HHHT--.HHHHHHHHHHH........HHHHHHHTTT----HHHHHHHH..........CTTT.......-.......HHHHHHHTHHHHH-H..................
#=GC seq_cons                        .........GLNSAPT.Rs....ssAs..................sPAssstss....ss.stt.s....sss.ssphulDulas........tlhsphsshGlslPsplpshYp..........As+s.......s.......hsshYtAspt.lp....................
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