GenomeNet

Database: Pfam
Entry: DUF3236
LinkDB: DUF3236
Original site: DUF3236 
#=GF ID   DUF3236
#=GF AC   PF11576.5
#=GF DE   Protein of unknown function (DUF3236)
#=GF AU   Pollington J
#=GF SE   pdb_3brc
#=GF GA   25.00 25.00;
#=GF TC   184.60 182.30;
#=GF NC   24.00 23.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF DR   INTERPRO; IPR012019;
#=GF CC   This family of proteins with unknown function appears to be
#=GF CC   restricted to Methanobacteria.
#=GF SQ   16
#=GS A2SU94_METLZ/6-158  AC A2SU94.1
#=GS F0S2B9_DESTD/6-156  AC F0S2B9.1
#=GS L0HD08_METFS/1-153  AC L0HD08.1
#=GS A6UWJ5_META3/3-161  AC A6UWJ5.1
#=GS D3E196_METRM/3-154  AC D3E196.1
#=GS Y488_METJA/4-156    AC Q57912.1
#=GS Y488_METJA/4-156    DR PDB; 3WB0 B; 4-156;
#=GS Y488_METJA/4-156    DR PDB; 3WB2 A; 4-156;
#=GS Y488_METJA/4-156    DR PDB; 3WB2 D; 4-156;
#=GS Y488_METJA/4-156    DR PDB; 3WB0 C; 4-156;
#=GS Y488_METJA/4-156    DR PDB; 3WB1 C; 4-156;
#=GS Y488_METJA/4-156    DR PDB; 3WB1 D; 4-156;
#=GS Y488_METJA/4-156    DR PDB; 3WB2 B; 4-156;
#=GS Y488_METJA/4-156    DR PDB; 3WB0 D; 4-156;
#=GS Y488_METJA/4-156    DR PDB; 3WB1 B; 4-156;
#=GS Y488_METJA/4-156    DR PDB; 3WB2 C; 4-156;
#=GS Y488_METJA/4-156    DR PDB; 3WB1 A; 4-156;
#=GS Y488_METJA/4-156    DR PDB; 3WB0 A; 4-156;
#=GS D5VQF5_METIM/6-158  AC D5VQF5.1
#=GS Q6LX55_METMP/3-155  AC Q6LX55.1
#=GS O27213_METTH/2-154  AC O27213.1
#=GS O27213_METTH/2-154  DR PDB; 3BRC B; 2-154;
#=GS O27213_METTH/2-154  DR PDB; 3BRC A; 2-154;
#=GS Q8TZB7_METKA/2-154  AC Q8TZB7.1
#=GS E3GZ38_METFV/3-155  AC E3GZ38.1
#=GS D7DUD3_METV3/4-166  AC D7DUD3.1
#=GS A5UKQ1_METS3/3-155  AC A5UKQ1.1
#=GS F6BF29_METIK/1-153  AC F6BF29.1
#=GS E1RJE0_METP4/3-155  AC E1RJE0.1
#=GS R9SJE0_9EURY/3-155  AC R9SJE0.1
A2SU94_METLZ/6-158             i-DCCVSSAYSQSLNGTRLGDTAEETMSIREYIKSSRHIVVPNHDDRKIAVINSVLSSFG..........LPRAVHLCIPTNSPDLTRTPAVSKALMALDITGADLVIARGRLGVPGSGSMLVIMDSRGRILSASLSPSHLYHAKSISDAVTHEMEEALVRVGF
F0S2B9_DESTD/6-156             l--ELFKNAFLESLVGNRKGDKPEETALLRERILKG-KIGIVTNNKKKFTIAKKTISLFG..........IKNISQIEIPTEIFDLTEIPTLSKALAGRFFKNCNFYVARGRLGAPGSGALTIMIDEFGHVISAVTSPPHHLHKFSLETSVFLDIFRLLKRLGF
L0HD08_METFS/1-153             .MEDLIRGAYHESLAGARKGDTDAELEAIRHYIRGARTIIVPNRNTVKISVINTVLAEFG..........LPRAVHLHCDTNCCDISRMPALTKALMALDISGCDLVIARGRLGMPGSGSMLVILDNRGRILTAGLSPSHSIHKKPVELAVHDEMVMALERIGL
A6UWJ5_META3/3-161             n-NKIIKDAYLESITNKRCGDKIEELLYIQNKILNAKKIVVATNNKKKFDIINNILISLFkny....dkpLPTIEKLDLPTNSVDLTRFPAINKGLIAVDTSDADIVIARGRLGAPGSGSMLIIMNNKGRCLSASLSPTSLIHKKDIEDAVKDELNEALERIGI
D3E196_METRM/3-154             .FEESIRKASIQSYEGTRKGDTIEEIEAIQNYIRNA-KIVVPNKNGIKVEVINEVLAKFN..........IPPAEYLQVNTNYADFSRMPAIAKAMIAVDQSDADLVIARGRLGIPGSGSFLVFMDSKSRILTAATSPSHIIHNQPLEKTVYKETLEALKKVGF
Y488_METJA/4-156               .MEEIIKKAFIESINNIRRGDKEEELKKIQEKIVNAKKIVVATNNQKKFKVIRDIMLRVC..........NAEIKMLDIDTRFADLTRMPALTKGLIALDIEKADLYIARGRLGAPGSGSMLVILDEKGRVLTASLSPSSVIHKEDIEERIKKELIEALSRIGI
#=GR Y488_METJA/4-156    SS    .HHHHHHHHHHHHTT---S--HHHHHHHHHHHHT-SEEEES-SSHHHHHHHHHHHTTT--..........GGGGGSSSHHHHHHHHHHHH---SEEEEEEE-SSTTS-EEEEEEETTS-EEEEEEE--HHHH---HHHHHHHHHHHHHHTTT-XXXXXXXXXXX
D5VQF5_METIM/6-158             l-SNLIKRAYLQSLKGEREGDREEEVEAIRETIKSAKKIVVATNNEKKFKVIKNIISEIC..........DAEIKMIDLDTKVADLSRMPAIAKGLIALDVEDADLYIARGRLGVPGSGSMLVIMDSKGRILTASLSESSAIHKESLERRIEKEVKDALRRVGL
Q6LX55_METMP/3-155             .IENTIKSAYEESLNNARFGDKIEEIDAIQSTIKSAKNVTVATSNEKKFKVVSDIISRIT..........DANISMLEIPTNSADLTRMPALNKGLIAVDSSDADLIITRGRLGIPGSGSLLLIMDKKGRILTGSVSPSSIIHKNPIDKTVELELITALERIGI
O27213_METTH/2-154             .LEDLIGKAYLESAEDRRRGDRSEEVEAIRKYIRSARRTVVPNWNAEKVDAINDVLRSFN..........LREAEHLQFNTNWADLTRMPAVTKALMALDISGADLVIARGRLGVPGSGSLLVIMDSRGRLLSAAMSPPHVIHSMEVREAVRSEMTHALERIGF
#=GR O27213_METTH/2-154  SS    .HHHHHHHHHHHHTT---S--HHHHHHHHHHHHH-S-EEE----HHHHHHHHHHHHHTT-..........GGGGGSSSHHHHHHHHHHHHH--SEEEEEEE-SSTTS-EEEEEEETTS-EEEEEEE--TTTS---HHHHHHHHHHHHHHTTT-XXXXXXXXXXX
Q8TZB7_METKA/2-154             l-KETLLKAWWESWEGTRRGDEEREVEGLREYLTSADRLAVVTGNEDKLRAVNKVLRRFG..........LPEAEMIRVPTEMADATPCPAIFKAIMGVQVSDADVVIARGRLGVPGSGAMTVFMDARCRLLTAALSPPHVLHEMSVKEAMEREAEEALRRLGM
E3GZ38_METFV/3-155             .MEKLIKKAYVESVEGRRQGDKIKEVKEIQKYILNAKNIVVPNKTKEKVKAINEVLEKFG..........IQKAKHLKFYTDACDLNRTPAISKALMALDIVDCDLVIARGRLGVPGSGSMLVIMDSKGRILSAALSPPHIIHKKSVEKAVKDEMTTALKRIGL
D7DUD3_METV3/4-166             v-NKIIKNSYIHSLENCRNGDQIEEIEAIQNVIKNSKKIVVATSNGKKFKVVKNIILKVLdnhcndnnqnNVNIEMLDICTNSADLTRMPALTKGLIAVDITDADLIIARGRLGIAGSGSLLLLMDGKGRILTGAMSPSSIIHKESIEHKMEFELLQALKKIGI
A5UKQ1_METS3/3-155             .FEEMIKKALDESRNNCRLGDTLEEVREIQNYIKNAEKIYIPNKNGIKVDVLNKVLREYN..........LPSAKILQINTNEADSNRSPAFAKAIMALDVCDADLIIARGRLGLPGSGSLLLFVDNKGRILTCGTSPSHAISQKTLEDAVYEEANEALQKIGF
F6BF29_METIK/1-153             .MENLIKKAYTQSIKNKRRGDEEEEVEAIKRIILNAKKIIIATNNQKKFKVISDILSRVV..........NAKIEMLNINTNCADLTRMPAVSKGLIAVDTEEADVVIARGRLGVPGSGSMLVIMDGKGRILSASLSPSSVVHKEDIETRIKKEIIDALKRVGI
E1RJE0_METP4/3-155             .LEDFISKACIESSTGIRRGDKREETEGIREYILNSKTIVIPNCNDEKVAAVNEVLDELD..........LPKAGHLNIHTDSCDVSRMPAVTKALMALDMTDADLIIARGRLGVPGSGSMLVIVDCKGRLLSASISPSHHIHGKTVYQAVKDEMTDALSRIGF
R9SJE0_9EURY/3-155             .FEKMIKNAFEESENNCRFGDKIEEVHEIQTYIKNAKKIYVPNKNGIKVKVLNKVLKEYG..........LNEAHILKINTNFADTSRIPALSKAYIALDQCDCDLIISRGRLGVPGSGSLLVFIDNKGRILTAGSSPSHAVTSKPLEEAVYMEAVEALEKVGF
#=GC SS_cons                   .HHHHHHHHHHHHTT---S--HHHHHHHHHHHHC-SEEEES-SSHHHHHHHHHHHCCTT-..........GGGGGSSSHHHHHHHHHHHHH--SEEEEEEE-SSTTS-EEEEEEETTS-EEEEEEE--CCCC---HHHHHHHHHHHHHHTTT-XXXXXXXXXXX
#=GC seq_cons                  .hEchIKcAahESlpspRpGDc.EElcuIpchIpsA++IlVsspNpcKhcVlNclLpchs..........lschchLclsTNhADLoRhPAloKALhAlDhsDADLlIARGRLGlPGSGShLVIMDsKGRILoAulSPSHlIHccslEcuVccEhh-ALcRlGh
//
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