GenomeNet

Database: Pfam
Entry: DUF3242
LinkDB: DUF3242
Original site: DUF3242 
#=GF ID   DUF3242
#=GF AC   PF11586.5
#=GF DE   Protein of unknown function (DUF3242)  
#=GF AU   Pollington J
#=GF SE   pdb_1vr8
#=GF GA   25.00 25.00;
#=GF TC   25.60 164.10;
#=GF NC   22.20 24.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF RN   [1]
#=GF RM   16948158
#=GF RT   Crystal structure of an ORFan protein (TM1622) from Thermotoga
#=GF RT   maritima at 1.75 A resolution reveals a fold similar to the
#=GF RT   Ran-binding protein Mog1p. 
#=GF RA   Xu Q, Krishna SS, McMullan D, Schwarzenbacher R, Miller MD,
#=GF RA   Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod HL,
#=GF RA   Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L,
#=GF RA   Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Hampton E, Han
#=GF RA   GW, Haugen
#=GF RL   Proteins. 2006;65:777-782.
#=GF DR   INTERPRO; IPR021636;
#=GF CC   This protein from Thermotoga maritima is a hypothetical ORFan
#=GF CC   protein, TM1622, whose structure has been determined. The
#=GF CC   protein is composed of seven beta strands and three alpha
#=GF CC   helices [1].
#=GF SQ   5
#=GS A8F4M0_PSELT/26-153  AC A8F4M0.1
#=GS A6LP92_THEM4/28-157  AC A6LP92.1
#=GS F7YVF9_9THEM/27-154  AC F7YVF9.1
#=GS A7HMP8_FERNB/36-164  AC A7HMP8.1
#=GS Q9X1V7_THEMA/26-152  AC Q9X1V7.1
#=GS Q9X1V7_THEMA/26-152  DR PDB; 1VR8 A; 26-152;
A8F4M0_PSELT/26-153             PRVYSISSAVKSLQD.SYLLVFVEEV.DGYGPV.EAKGVVASYvhDGKNYLFYGFKFYDES.PKVYWKKIVKEIGIWSSRTYF..DLLNSGLYSSKKDGKYIVVWWKDVWMFIVESSSNAEDFANYVMNWFAKL
A6LP92_THEM4/28-157             PGSFSLKSALLILDGfQYPLTSVVKVnEVYGAK.LGNGICGMF..ENFNGTFYVFKYVSSNvAKSNWKNFRKQVGGPLKINYLtySWLDRGYFQVKYKSIDIISWWKDNWLFIITGKD-AKEFFNYINEVYGEI
F7YVF9_9THEM/27-154             PDAFSASSALRIVQN.HYRLVLIEEI.DGYEDV.QMKGMVALYikDNKQFLLYAFKFQGES.PRKYWSKIVKNFGIWSSRTYL..DFPTSGLYSTRKSGKEIVVWWKNRWLFIAEGREDTETFASQVMDVYSRI
A7HMP8_FERNB/36-164             PSSYSQEAAINVLSN.KYYLIDSGYI.EGFGDIyLGEGRYAIF..DGVDGIFMVFKYDDEEhAKESWNKITKKYNNPFKLKYFkvNMGDYGVFTLRLENTDLYVWYKDNWLIVISGDK-IDNFVKDVNEIYKTI
Q9X1V7_THEMA/26-152             PEAYSLDTAIFVLETrDYRLSDVKEI.DSYGDV.EMKGKVAVF..ETEYGPVFLYVYKGEE.AKKIWKKLNGRAGFVSIRSVL..DLPNMGKFSTVSNGKKIVAWWRKNWLFIVEGKNGVEEFVKHVYRVYEEM
#=GR Q9X1V7_THEMA/26-152  SS    -TTS-HHHHHHTT-BTTBEEEEEEEE.EETTEE.EEEEEEEEE..EEEEEEEEESTTHHHH.HHHHT-------EEEEE-SSE..EEEEETTEEEEEEEETTEEEEEEESS-HHHHHHHHHHHHHTSXXXXXXX
#=GC SS_cons                    -TTS-HHHHHHTT-BTTBEEEEEEEE.EETTEE.EEEEEEEEE..EEEEEEEEESTTHHHH.HHHHT-------EEEEE-SSE..EEEEETTEEEEEEEETTEEEEEEESS-HHHHHHHHHHHHHTSXXXXXXX
#=GC seq_cons                   PcuYSlcSAlplLps.cYhLlsVcEI.DGYGDV.puKGhVAlF..DscsGlFYlFKYpuEs.AKchWKKIsKchGhsSpRoYL..DhsspGlFSo+pcGK-IVVWWKDNWLFIlEG+cssE-FssaVh-VYucI
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