GenomeNet

Database: Pfam
Entry: DUF3242
LinkDB: DUF3242
Original site: DUF3242 
#=GF ID   DUF3242
#=GF AC   PF11586.3
#=GF DE   Protein of unknown function (DUF3242)  
#=GF AU   Pollington J
#=GF SE   pdb_1vr8
#=GF GA   25.00 25.00;
#=GF TC   134.20 134.00;
#=GF NC   22.70 20.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF RN   [1]
#=GF RM   16948158
#=GF RT   Crystal structure of an ORFan protein (TM1622) from Thermotoga
#=GF RT   maritima at 1.75 A resolution reveals a fold similar to the
#=GF RT   Ran-binding protein Mog1p. 
#=GF RA   Xu Q, Krishna SS, McMullan D, Schwarzenbacher R, Miller MD,
#=GF RA   Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod HL,
#=GF RA   Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L,
#=GF RA   Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Hampton E, Han
#=GF RA   GW, Haugen
#=GF RL   Proteins. 2006;65:777-782.
#=GF DR   INTERPRO; IPR021636;
#=GF CC   This protein from Thermotoga maritima is a hypothetical ORFan
#=GF CC   protein, TM1622, whose structure has been determined. The
#=GF CC   protein is composed of seven beta strands and three alpha
#=GF CC   helices [1].
#=GF SQ   11
#=GS A5ILW0_THEP1/26-153  AC A5ILW0.1
#=GS A7HMP8_FERNB/36-165  AC A7HMP8.1
#=GS A8F4M0_THELT/26-154  AC A8F4M0.1
#=GS D2C3G6_THENR/26-153  AC D2C3G6.1
#=GS F7YVF9_9THEM/27-155  AC F7YVF9.1
#=GS B7IF46_THEAB/28-158  AC B7IF46.1
#=GS Q9X1V7_THEMA/26-153  AC Q9X1V7.1
#=GS Q9X1V7_THEMA/26-153  DR PDB; 1VR8 A; 26-153;
#=GS H9UE66_FERPE/35-164  AC H9UE66.1
#=GS B1LBD2_THESQ/26-153  AC B1LBD2.1
#=GS B9K7S9_THENN/25-153  AC B9K7S9.1
#=GS A6LP92_THEM4/28-158  AC A6LP92.1
A5ILW0_THEP1/26-153             PEAYSLDTAIFVLETrDYRLSDVKEI.DSYGDV.EMKGKVA..VFETEYG.PVFLYVYKGEE-AKKIWKKLNGRAGFVSIRSVL--DLPNMGKFSTVSDGKKIIAWWRKNWLFVVEGKNgVEEFVKHVYRVYEEMK.
A7HMP8_FERNB/36-165             PSSYSQEAAINVLSN.KYYLIDSGYI.EGFGDIyLGEGRYA..IFDGVDG.IFMVFKYDDEEHAKESWNKITKKYNNPFKLKYFKVNMGDYGVFTLRLENTDLYVWYKDNWLIVISGDK.IDNFVKDVNEIYKTIK.
A8F4M0_THELT/26-154             PRVYSISSAVKSLQD.SYLLVFVEEV.DGYGPV.EAKGVVAsyVHDGKNY.LFYGFKFYDES-PKVYWKKIVKEIGIWSSRTYF--DLLNSGLYSSKKDGKYIVVWWKDVWMFIVESSSnAEDFANYVMNWFAKL-g
D2C3G6_THENR/26-153             PEAYSLDTAIFVLETrDYRLSDVKEI.DSYGDV.EMKGKVA..VFETDYG.PVFLYVYKGEE-AKKIWKKLNSRAGFVSIRSVL--DLPNMGKFSTVSDGKKIIAWWRKNWLFVVEGKNgVEEFVKHVYRVYEEMK.
F7YVF9_9THEM/27-155             PDAFSASSALRIVQN.HYRLVLIEEI.DGYEDV.QMKGMVAlyIKDNKQF.LLYAFKFQGES-PRKYWSKIVKNFGIWSSRTYL--DFPTSGLYSTRKSGKEIVVWWKNRWLFIAEGREdTETFASQVMDVYSRI-g
B7IF46_THEAB/28-158             PGSFSLKSAISLLDSyEYPLVETGEInSLYGVQ.LNRGMYG..VFKNFDG.MFYVFKYEDEKLTKNDWNRLIKTFGSVLKINYFKFSLFDRGYLQTKFEDLNVITWWKGNWLFVITGNN.SKEFFEYINKVYGMI-q
Q9X1V7_THEMA/26-153             PEAYSLDTAIFVLETrDYRLSDVKEI.DSYGDV.EMKGKVA..VFETEYG.PVFLYVYKGEE-AKKIWKKLNGRAGFVSIRSVL--DLPNMGKFSTVSNGKKIVAWWRKNWLFIVEGKNgVEEFVKHVYRVYEEMK.
#=GR Q9X1V7_THEMA/26-153  SS    -TTS-HHHHHHTT-BTTBEEEEEEEE.EEETTE.EEEEEEE..EEEETTE.EEEEEEEESTT-HHHHHHHHHT-XXX---EEEE--E-SSEEEEEEEETTEEEEEEEETTEEEEEEESS-HHHHHHHHHHHHHTS-.
H9UE66_FERPE/35-164             PASYSVEAAINVIAN.KYMLLDSGWV.NGFGDMeLGEGRYA..TFDGVDG.FLMVFKYEDPDQAKASWDKITKRYGNPLRLKYLKINMGTYGVFTIRLENTDLYSWYKENWLFVITGDK.IEKFVMDVNNIYKTI-r
B1LBD2_THESQ/26-153             PEAYSLDTAIFVLETrDYRLSDVKEI.DSYGDV.EMKGKVA..VFETEYG.PVFLYVYKGKE-AKKIWKKLNGRAGFVSIRSVL--DLPNMGKFSTVSNGKKIVAWWRKNWLFIVEGKNgVEEFVKHVYRVYEEMK.
B9K7S9_THENN/25-153             PDAYSVETALQILENqEYRLVDIKEV.DQYRDV.EMKGKVA..IFESKTGdVLLLYAYRGED-AKQVWKAVKKKSGFLSVRSIL--ELPNMGKFSTILDGKRIVSWWKKRWFFTVEGRNgVDKFVKHVFRVYGVLK.
A6LP92_THEM4/28-158             PGSFSLKSALLILDGfQYPLTSVVKVnEVYGAK.LGNGICG..MFENFNG.TFYVFKYVSSNVAKSNWKNFRKQVGGPLKINYLTYSWLDRGYFQVKYKSIDIISWWKDNWLFIITGKD.AKEFFNYINEVYGEIK.
#=GC SS_cons                    -TTS-HHHHHHTT-BTTBEEEEEEEE.EEETTE.EEEEEEE..EEEETTE.EEEEEEEESTT-HHHHHHHHHT-XXX---EEEE--E-SSEEEEEEEETTEEEEEEEETTEEEEEEESS-HHHHHHHHHHHHHTS-.
#=GC seq_cons                   PcuYSl-oAIhlL-s.cYhLsDlcEI.DuYGDV.phKG+VA..lF-scpG.hlalatYcuE-.AKphWKKlsK+hGhsShRohL..-LsshGhFSThh-GKcIluWWKcNWLFllEG+sslE-FVcaVhcVYpclK.
//
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