GenomeNet

Database: Pfam
Entry: DUF3247
LinkDB: DUF3247
Original site: DUF3247 
#=GF ID   DUF3247
#=GF AC   PF11607.6
#=GF DE   Protein of unknown function (DUF3247)
#=GF AU   Pollington JE
#=GF SE   pdb_2e12
#=GF GA   25.00 25.00;
#=GF TC   75.90 75.70;
#=GF NC   18.90 17.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF RN   [1]
#=GF RM   17546661
#=GF RT   XC5848, an ORFan protein from Xanthomonas campestris, adopts a
#=GF RT   novel variant of Sm-like motif. 
#=GF RA   Chin KH, Ruan SK, Wang AH, Chou SH; 
#=GF RL   Proteins. 2007;68:1006-1010.
#=GF DR   INTERPRO; IPR021649;
#=GF CC   This family of proteins is the protein product of the gene
#=GF CC   XC5848 from Xanthomonas campestris. The protein has no known
#=GF CC   function however its structure has been determined. The protein
#=GF CC   adopts a Lsm fold however differences with the fold were
#=GF CC   observed at the N-terminal and internal regions [1].
#=GF SQ   14
#=GS G7UVI6_PSEUP/1-92      AC G7UVI6.1
#=GS M4NSR9_9GAMM/1-92      AC M4NSR9.1
#=GS A0A023Y7A8_9GAMM/1-92  AC A0A023Y7A8.1
#=GS Q8P4R5_XANCP/1-92      AC Q8P4R5.1
#=GS Q8P4R5_XANCP/1-92      DR PDB; 2E12 B; 1-92;
#=GS Q8P4R5_XANCP/1-92      DR PDB; 2E12 A; 1-92;
#=GS A0A0E3Z3U1_9GAMM/1-84  AC A0A0E3Z3U1.1
#=GS I4VR42_9GAMM/1-92      AC I4VR42.1
#=GS I4WDL0_9GAMM/11-102    AC I4WDL0.1
#=GS Q5H517_XANOR/11-102    AC Q5H517.1
#=GS A0A0A8DWM7_9XANT/1-92  AC A0A0A8DWM7.1
#=GS A0A023NWL5_9GAMM/1-92  AC A0A023NWL5.1
#=GS I4W241_9GAMM/1-92      AC I4W241.1
#=GS A0A0F3L1A6_9GAMM/1-92  AC A0A0F3L1A6.1
#=GS B2FLQ5_STRMK/1-92      AC B2FLQ5.1
#=GS E6WUD4_PSEUU/3-92      AC E6WUD4.1
G7UVI6_PSEUP/1-92                 ...MSKYAERVHTDRNKIAELEALVTQLPSEARVALLLEDGRQLRGTVPVQPTVQIFRDAQEQEGVNALLRLDDLADPSHQHHLWLDQVRKVTPL..
M4NSR9_9GAMM/1-92                 ...MGRAAERVYTDPASIRRLESLIGELPANGHVVLLLKDGSSCDGVVVTRPNVQLFRDADEREGINATVKLERPDVPAWSRQVWLDQIARVEHV..
A0A023Y7A8_9GAMM/1-92             ...MSRYAPTIHTDPARIAALEALLPQLRGQTHVEITLDDGTRLLGTVAVQPTLQQYRDADENEGSNGQLRLDDLDSPVQQHLVWLDRIASIRQL..
Q8P4R5_XANCP/1-92                 ...MPKYAPHVYTEQAQIATLEHWVKLLDGQERVRIELDDGSMIAGTVAVRPTIQTYRDEQEREGSNGQLRIDHLDASQEPQWIWMDRIVAVHPM..
#=GR Q8P4R5_XANCP/1-92      SS    ...---B-S--B--HHHHHHHHHHHHCTTTT-EEEEEETTS-EEEEEECC---EEEEE-TT--EEEEEEEEEE-SSTT-SEEEEEGGGEEEEEE-..
A0A0E3Z3U1_9GAMM/1-84             .ml---------TAGTDIDRLTAVCALLDDEEQVRLRFDDGSVLEGVVAARPTVQVFRDG-EGEGFNALLRLEPLAGDALPRYLWLDRLVEVVRL..
I4VR42_9GAMM/1-92                 ...MTRQATHVYTEPRDIQRFEMLVQALSGGARVRLHLVDGQHCEGVVCARPTVQMFYDGTGKEGVNGVVELEHLNLSDWRRRVWFDQITDVEQL..
I4WDL0_9GAMM/11-102               ...MAQYVERVCVDPADIRRLESLVADLQGNGHVSIVQKDGSVCEGVVSVRPTMQVMRDQSGREGINAELRLERPREPAWSRRIWLDQIERVEHL..
Q5H517_XANOR/11-102               ...MPKYAPHVYSEQVQIATLEPWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHRKEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPM..
A0A0A8DWM7_9XANT/1-92             ...MTQFAERIHTDQAQIQALEALILQLPGQAHVRIELHDGSVCFGTVSVRPSIQQFRDADGNEGSNAQVRIDDLDDPARHRYLWLDEIRSVRQL..
A0A023NWL5_9GAMM/1-92             ...MGRFAERVYTDPVHIRRLESLVQELPTNGHVVLLLKDGSAYDGVVSERPNVQLFRDGQENEGINGVVRLERPDVPDWSCYVWLGDIRRVEHL..
I4W241_9GAMM/1-92                 ...MGRQARHVYTDQASIHQLESLVEELPANGHVVLLLKDGSSCDGVVSTRPNVQVFRDAEEREGINATVQLERPDVPEWTRQVWLDQIVRVEHL..
A0A0F3L1A6_9GAMM/1-92             ...MGREADTVRTDQGSIARLQGLVKELPDNAKVRLHLRDGSVVKGIVTVVPTVQNFVDANGVEGVNGVVKLIDNDRPDWSATVSLDTIARVEHL..
B2FLQ5_STRMK/1-92                 ...MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRVDDYDTPVQQHHVWLDEIASIRRL..
E6WUD4_PSEUU/3-92                 sia---IAPRVHTDPQAIERLKTLQLELDGELEVELHMRDGSVLRGTLPERPTIQQFFDPDGNAGTNGLFRMDDGDGGV--HLYWLDEIEKVV--pt
#=GC SS_cons                      ...---B-S--B--HHHHHHHHHHHHCTTTT-EEEEEETTS-EEEEEECC---EEEEE-TT--EEEEEEEEEE-SSTT-SEEEEEGGGEEEEEE-..
#=GC seq_cons                     ...Ms+hA.+VaTD.spItcLEuLltpLsups+VcLhLcDGShhcGsVusRPTlQhFRDuptpEGsNu.lRL-chDsPshp+hlWLDpIscVcpL..
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