GenomeNet

Database: Pfam
Entry: DUF3247
LinkDB: DUF3247
Original site: DUF3247 
#=GF ID   DUF3247
#=GF AC   PF11607.3
#=GF DE   Protein of unknown function (DUF3247)
#=GF AU   Pollington JE
#=GF SE   pdb_2e12
#=GF GA   25.00 25.00;
#=GF TC   66.70 66.40;
#=GF NC   21.00 20.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF RN   [1]
#=GF RM   17546661
#=GF RT   XC5848, an ORFan protein from Xanthomonas campestris, adopts a
#=GF RT   novel variant of Sm-like motif. 
#=GF RA   Chin KH, Ruan SK, Wang AH, Chou SH; 
#=GF RL   Proteins. 2007;68:1006-1010.
#=GF DR   INTERPRO; IPR021649;
#=GF CC   This family of proteins is the protein product of the gene
#=GF CC   XC5848 from Xanthomonas campestris. The protein has no known
#=GF CC   function however its structure has been determined. The protein
#=GF CC   adopts a Lsm fold however differences with the fold were
#=GF CC   observed at the N-terminal and internal regions [1].
#=GF SQ   26
#=GS F0BYP2_9XANT/1-102   AC F0BYP2.1
#=GS G7UVI6_PSEUP/1-94    AC G7UVI6.1
#=GS Q3BNX9_XANC5/1-102   AC Q3BNX9.1
#=GS B2SQE1_XANOP/1-95    AC B2SQE1.1
#=GS B4SIE8_STRM5/1-97    AC B4SIE8.1
#=GS B8L195_9GAMM/1-97    AC B8L195.1
#=GS F0BDD0_9XANT/1-72    AC F0BDD0.1
#=GS Q8PGD5_XANAC/49-150  AC Q8PGD5.1
#=GS B2FLQ5_STRMK/1-96    AC B2FLQ5.1
#=GS D4TAA4_9XANT/48-149  AC D4TAA4.1
#=GS H1XE79_9XANT/1-102   AC H1XE79.1
#=GS F0CBI7_9XANT/1-102   AC F0CBI7.1
#=GS G7THQ7_9XANT/1-95    AC G7THQ7.1
#=GS D4SRR3_9XANT/48-149  AC D4SRR3.1
#=GS G2LUU0_9XANT/1-102   AC G2LUU0.1
#=GS G4G1G3_9GAMM/1-98    AC G4G1G3.1
#=GS Q8P4R5_XANCP/1-101   AC Q8P4R5.1
#=GS Q8P4R5_XANCP/1-101   DR PDB; 2E12 B; 1-93;
#=GS Q8P4R5_XANCP/1-101   DR PDB; 2E12 A; 1-93;
#=GS E6WUD4_PSEUU/3-94    AC E6WUD4.1
#=GS Q2P7T6_XANOM/1-102   AC Q2P7T6.1
#=GS Q5H517_XANOR/11-112  AC Q5H517.1
#=GS I0KJ35_STEMA/1-97    AC I0KJ35.1
#=GS G0JW47_STEMA/1-96    AC G0JW47.1
#=GS G0CB37_XANCA/1-102   AC G0CB37.1
#=GS H8FJK7_XANCI/1-102   AC H8FJK7.1
#=GS B0RWF6_XANCB/1-102   AC B0RWF6.1
#=GS Q4UQC0_XANC8/1-101   AC Q4UQC0.1
F0BYP2_9XANT/1-102              ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDDHDNEGLNGQLRLDQLDASQEPQWIWMDRIVAVHPLLLGAdPQVMP......
G7UVI6_PSEUP/1-94               ...MSKYAERVHTDRNKIAELEALVTQLPSEARVALLLEDGRQLRGTVPVQPTVQIFRDAQEQEGVNALLRLDDLADPSHQHHLWLDQVRKVTPL----.-----gs....
Q3BNX9_XANC5/1-102              ...MPKHAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDDHDNEGLNGQLRLDQLDASQEPQWIWMDRIVAVHPLLLGAdPQVMP......
B2SQE1_XANOP/1-95               ...-------MYSEQVQIATLEPWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHRKEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPMPLGAdPHVMP......
B4SIE8_STRM5/1-97               ...MSRIAPRIHTDPAQIARLEALLPQLEGETQVELTLQDGRRLLGTIAVKPTVQQYRNDAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRLPPKA.P----......
B8L195_9GAMM/1-97               ...MSRIAPRIHTDPAQIARLEALLPQLEGETQVQLTLHDGRRLLGTVAVKPTLQQYRNDAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIDRLPPRA.P----......
F0BDD0_9XANT/1-72               ..m-------------------------------RIELDDGSMLSGTVAVRPTIQTYLDDNDNEGLNGQLRLDQLDASQEPHWIWMDRIVAVHPLPLGAdPQVMP......
Q8PGD5_XANAC/49-150             ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHDNEGLNGQLRLDLLDTSQEPQWIWMDRIVAVHPLLLGAdPQVMP......
B2FLQ5_STRMK/1-96               ...MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRVDDYDTPVQQHHVWLDEIASIRRLPPR-.-----v.....
D4TAA4_9XANT/48-149             ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDDHDNEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPLLLGAdPQVMP......
H1XE79_9XANT/1-102              ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHDNEGLNGQLRLDLLDASQEPQWIWMDRIVAVHPLLLGAdPQVMP......
F0CBI7_9XANT/1-102              ...MSKYAPNVYSEQVQIATLEHWVSLLGGQERVQIELDDGSTISGTVAVRPTIQTYLDAQQREGINGQLRLDHLDAAQEPQWIWMDRIVAVHPLPVGIaPQP--tp....
G7THQ7_9XANT/1-95               ...-------MYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRASLQTYLDEHRNEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPMPLGAdPHVMP......
D4SRR3_9XANT/48-149             ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDDHDNEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPLLLGAdPQVMP......
G2LUU0_9XANT/1-102              ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDDHDNEGLNGQLRLDQLDASQEPQWIWMDRIVAVHPLLLGAdPQVMP......
G4G1G3_9GAMM/1-98               ...MGRAAERVYTDPASIRRLESLIGELPANGHVVLLLKDGSSCDGVVVTRPNVQLFRDADEREGINATVKLERPDVPAWSRQVWLDQIARVEHV----.-----dsimas
Q8P4R5_XANCP/1-101              ...MPKYAPHVYTEQAQIATLEHWVKLLDGQERVRIELDDGSMIAGTVAVRPTIQTYRDEQEREGSNGQLRIDHLDASQEPQWIWMDRIVAVHPMPLGA.PQVMP......
#=GR Q8P4R5_XANCP/1-101   SS    ...---B-S--B--HHHHHHHHHHHHCTTTT-EEEEEETTS-EEEEEECC---EEEEE-TT--EEEEEEEEEE-SSTT-SEEEEEGGGEEEEEE--XXX.XXXXX......
E6WUD4_PSEUU/3-94               sia---IAPRVHTDPQAIERLKTLQLELDGELEVELHMRDGSVLRGTLPERPTIQQFFDPDGNAGTNGLFRMDDGDGGV--HLYWLDEIEKVVP-----.-----tgt...
Q2P7T6_XANOM/1-102              ...MPKYAPHVYSEQVQIATLEPWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHRKEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPMPLGAdPHVMP......
Q5H517_XANOR/11-112             ...MPKYAPHVYSEQVQIATLEPWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHRKEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPMPLGAdPHVMP......
I0KJ35_STEMA/1-97               ...MSRIAPRIHTDPAQIARLEALLPQLEGETQVELILHDGRRLLGTVAVRPTVQQYRNVTGDEGSNGQLRLDDYDTPVQQHHVWLDEIASINRLPPKA.P----......
G0JW47_STEMA/1-96               ...MSRIAPRIHTDPAQIARLEGLLPQLEGETQVELTLHDGRRLLGTVAVRPTVQQYRNEAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRLPPR-.-----v.....
G0CB37_XANCA/1-102              ...MPKYAPHVYTEQAQIATLEHWVKLLDGQERVRIELDDGSMIAGTVAVRPTIQTYRDEQEREGSNGQLRIDHLDASQEPQWIWMDRIVAVHPMPLGAdPQVMP......
H8FJK7_XANCI/1-102              ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHDNEGLNGQLRLDLLDASQEPQWIWMDRIVAVHPLLLGAdPQVMP......
B0RWF6_XANCB/1-102              ...MPKYAPHVYTEQAQIATLEHWVKLLDGQERVRIELDDGSMIAGTVAVRPTIQTYRDEQEREGSNGQLRIDHLDASQEPQWIWMDRIVAVHPMPLGAdPQVMP......
Q4UQC0_XANC8/1-101              ...MPKYAPHVYTEQAQIATLEHWVKLLDGQERVRIELDDGSMIAGTVAVRPTIQTYRDEQEREGSNGQLRIDHLDASQEPQWIWMDRIVAVHPMPLGA.PQVMP......
#=GC SS_cons                    ...---B-S--B--HHHHHHHHHHHHCTTTT-EEEEEETTS-EEEEEECC---EEEEE-TT--EEEEEEEEEE-SSTT-SEEEEEGGGEEEEEE--XXX.XXXXX......
#=GC seq_cons                   ...MsKaAP+VYoEQsQIATLEpWVsLLDGQERVRIELDDGSMIuGTVAVRPolQTYhD-pcsEGlNGQLRLDpLDASQEPQWIWMDRIVAVHPL.LGAsPpVMP......
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