GenomeNet

Database: Pfam
Entry: DUF3247
LinkDB: DUF3247
Original site: DUF3247 
#=GF ID   DUF3247
#=GF AC   PF11607.4
#=GF DE   Protein of unknown function (DUF3247)
#=GF AU   Pollington JE
#=GF SE   pdb_2e12
#=GF GA   25.00 25.00;
#=GF TC   35.00 45.00;
#=GF NC   22.10 23.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF RN   [1]
#=GF RM   17546661
#=GF RT   XC5848, an ORFan protein from Xanthomonas campestris, adopts a
#=GF RT   novel variant of Sm-like motif. 
#=GF RA   Chin KH, Ruan SK, Wang AH, Chou SH; 
#=GF RL   Proteins. 2007;68:1006-1010.
#=GF DR   INTERPRO; IPR021649;
#=GF CC   This family of proteins is the protein product of the gene
#=GF CC   XC5848 from Xanthomonas campestris. The protein has no known
#=GF CC   function however its structure has been determined. The protein
#=GF CC   adopts a Lsm fold however differences with the fold were
#=GF CC   observed at the N-terminal and internal regions [1].
#=GF SQ   55
#=GS M4NSR9_9GAMM/1-92      AC M4NSR9.1
#=GS A0A023Y7A8_9GAMM/1-92  AC A0A023Y7A8.1
#=GS G7UVI6_PSEUP/1-92      AC G7UVI6.1
#=GS Q8P4R5_XANCP/1-92      AC Q8P4R5.1
#=GS Q8P4R5_XANCP/1-92      DR PDB; 2E12 B; 1-92;
#=GS Q8P4R5_XANCP/1-92      DR PDB; 2E12 A; 1-92;
#=GS I4VR42_9GAMM/1-92      AC I4VR42.1
#=GS F0BYP2_9XANT/1-92      AC F0BYP2.1
#=GS Q3BNX9_XANC5/1-92      AC Q3BNX9.1
#=GS J7SXV8_STEMA/1-92      AC J7SXV8.1
#=GS W4T239_9XANT/1-92      AC W4T239.1
#=GS B2SQE1_XANOP/1-85      AC B2SQE1.1
#=GS D4TAA4_9XANT/48-139    AC D4TAA4.1
#=GS V7ZHB0_9XANT/1-92      AC V7ZHB0.1
#=GS B4SIE8_STRM5/1-92      AC B4SIE8.1
#=GS Q4UQC0_XANC8/1-92      AC Q4UQC0.1
#=GS M4U0M5_9XANT/1-92      AC M4U0M5.1
#=GS M5TQV3_STEMA/1-92      AC M5TQV3.1
#=GS H1XE79_9XANT/1-92      AC H1XE79.1
#=GS F0BDD0_9XANT/1-62      AC F0BDD0.1
#=GS H8FJK7_XANCI/1-92      AC H8FJK7.1
#=GS Q8PGD5_XANAC/49-140    AC Q8PGD5.1
#=GS W4S445_9XANT/1-92      AC W4S445.1
#=GS I4WDL0_9GAMM/11-102    AC I4WDL0.1
#=GS B0RWF6_XANCB/1-92      AC B0RWF6.1
#=GS R0F8S1_9XANT/1-92      AC R0F8S1.1
#=GS Q5H517_XANOR/11-102    AC Q5H517.1
#=GS K8GED0_9XANT/1-92      AC K8GED0.1
#=GS D4SRR3_9XANT/48-139    AC D4SRR3.1
#=GS E6WUD4_PSEUU/3-92      AC E6WUD4.1
#=GS Z4WHK6_9XANT/1-92      AC Z4WHK6.1
#=GS G2LUU0_9XANT/1-92      AC G2LUU0.1
#=GS A0A031H8F9_9GAMM/1-92  AC A0A031H8F9.1
#=GS G7THQ7_XANOB/1-85      AC G7THQ7.1
#=GS M4W5B8_XANCI/1-92      AC M4W5B8.1
#=GS I0KJ35_STEMA/1-92      AC I0KJ35.1
#=GS M5CTS6_STEMA/1-92      AC M5CTS6.1
#=GS G0JW47_STEMA/1-92      AC G0JW47.1
#=GS M3DZI7_STEMA/1-92      AC M3DZI7.1
#=GS A0A021W4G2_9GAMM/1-92  AC A0A021W4G2.1
#=GS I4WE05_9GAMM/1-92      AC I4WE05.1
#=GS G0CB37_XANCA/1-92      AC G0CB37.1
#=GS F0CBI7_9XANT/1-92      AC F0CBI7.1
#=GS Q2P7T6_XANOM/1-92      AC Q2P7T6.1
#=GS W7FU03_STEMA/1-92      AC W7FU03.1
#=GS A0A023NWL5_9GAMM/1-92  AC A0A023NWL5.1
#=GS K8ZF20_XANCT/1-92      AC K8ZF20.1
#=GS I4W241_9GAMM/1-92      AC I4W241.1
#=GS B8L195_9GAMM/1-92      AC B8L195.1
#=GS K8FTW9_9XANT/1-92      AC K8FTW9.1
#=GS W4SDL5_9XANT/1-92      AC W4SDL5.1
#=GS L7HF60_XANCT/1-50      AC L7HF60.1
#=GS B2FLQ5_STRMK/1-92      AC B2FLQ5.1
#=GS U4M2S5_9XANT/1-92      AC U4M2S5.1
#=GS I4WW93_9GAMM/1-92      AC I4WW93.1
#=GS T5KL72_STEMA/1-92      AC T5KL72.1
#=GS A0A022M2V1_STEMA/1-92  AC A0A022M2V1.1
M4NSR9_9GAMM/1-92                 ...MGRAAERVYTDPASIRRLESLIGELPANGHVVLLLKDGSSCDGVVVTRPNVQLFRDADEREGINATVKLERPDVPAWSRQVWLDQIARVEHV..
A0A023Y7A8_9GAMM/1-92             ...MSRYAPTIHTDPARIAALEALLPQLRGQTHVEITLDDGTRLLGTVAVQPTLQQYRDADENEGSNGQLRLDDLDSPVQQHLVWLDRIASIRQL..
G7UVI6_PSEUP/1-92                 ...MSKYAERVHTDRNKIAELEALVTQLPSEARVALLLEDGRQLRGTVPVQPTVQIFRDAQEQEGVNALLRLDDLADPSHQHHLWLDQVRKVTPL..
Q8P4R5_XANCP/1-92                 ...MPKYAPHVYTEQAQIATLEHWVKLLDGQERVRIELDDGSMIAGTVAVRPTIQTYRDEQEREGSNGQLRIDHLDASQEPQWIWMDRIVAVHPM..
#=GR Q8P4R5_XANCP/1-92      SS    ...---B-S--B--HHHHHHHHHHHHCTTTT-EEEEEETTS-EEEEEECC---EEEEE-TT--EEEEEEEEEE-SSTT-SEEEEEGGGEEEEEE-..
I4VR42_9GAMM/1-92                 ...MTRQATHVYTEPRDIQRFEMLVQALSGGARVRLHLVDGQHCEGVVCARPTVQMFYDGTGKEGVNGVVELEHLNLSDWRRRVWFDQITDVEQL..
F0BYP2_9XANT/1-92                 ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDDHDNEGLNGQLRLDQLDASQEPQWIWMDRIVAVHPL..
Q3BNX9_XANC5/1-92                 ...MPKHAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDDHDNEGLNGQLRLDQLDASQEPQWIWMDRIVAVHPL..
J7SXV8_STEMA/1-92                 ...MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRVDDYDTPVQQHHVWLDEIASIRRL..
W4T239_9XANT/1-92                 ...MSRYAPHVYSEQVQIATLEHWVSLLGGQERVRVELDDGSMISGTVAVRPSIQTYLDDQQREGLNGQLRIDQLDAAQEPHWIWMDRIVAVHPL..
B2SQE1_XANOP/1-85                 ...-------MYSEQVQIATLEPWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHRKEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPM..
D4TAA4_9XANT/48-139               ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDDHDNEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPL..
V7ZHB0_9XANT/1-92                 ...MSKYAPHVYSEQVQIATLEHWVSLLGGQERVQIELDDGSTISGTVAVRPTIQTYLDAQQREGINGQLRLDHLDAAQEPQWIWMDRIVAVHPL..
B4SIE8_STRM5/1-92                 ...MSRIAPRIHTDPAQIARLEALLPQLEGETQVELTLQDGRRLLGTIAVKPTVQQYRNDAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRL..
Q4UQC0_XANC8/1-92                 ...MPKYAPHVYTEQAQIATLEHWVKLLDGQERVRIELDDGSMIAGTVAVRPTIQTYRDEQEREGSNGQLRIDHLDASQEPQWIWMDRIVAVHPM..
M4U0M5_9XANT/1-92                 ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHDNEGLNGQLRLDLLDTSQEPQWIWMDRIVAVHPL..
M5TQV3_STEMA/1-92                 ...MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNEAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASINRL..
H1XE79_9XANT/1-92                 ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHDNEGLNGQLRLDLLDASQEPQWIWMDRIVAVHPL..
F0BDD0_9XANT/1-62                 ..m-------------------------------RIELDDGSMLSGTVAVRPTIQTYLDDNDNEGLNGQLRLDQLDASQEPHWIWMDRIVAVHPL..
H8FJK7_XANCI/1-92                 ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHDNEGLNGQLRLDLLDASQEPQWIWMDRIVAVHPL..
Q8PGD5_XANAC/49-140               ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHDNEGLNGQLRLDLLDTSQEPQWIWMDRIVAVHPL..
W4S445_9XANT/1-92                 ...MSRYAPHVYSEQVQIATLEHWVSLLGGQERVRVELDDGSMISGTVAVRPSIQTYLDDQQREGLNGQLRIDQLDAAQEPHWIWMDRIVAVHPL..
I4WDL0_9GAMM/11-102               ...MAQYVERVCVDPADIRRLESLVADLQGNGHVSIVQKDGSVCEGVVSVRPTMQVMRDQSGREGINAELRLERPREPAWSRRIWLDQIERVEHL..
B0RWF6_XANCB/1-92                 ...MPKYAPHVYTEQAQIATLEHWVKLLDGQERVRIELDDGSMIAGTVAVRPTIQTYRDEQEREGSNGQLRIDHLDASQEPQWIWMDRIVAVHPM..
R0F8S1_9XANT/1-92                 ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSIQTYLDDQDNEGLNGQLRLDQLDASQEPQWIWMDRIVAVHQL..
Q5H517_XANOR/11-102               ...MPKYAPHVYSEQVQIATLEPWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHRKEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPM..
K8GED0_9XANT/1-92                 ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDDHDNEGLNGQLRLDQLDASQEPQWIWMDRIVAVHPL..
D4SRR3_9XANT/48-139               ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDDHDNEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPL..
E6WUD4_PSEUU/3-92                 sia---IAPRVHTDPQAIERLKTLQLELDGELEVELHMRDGSVLRGTLPERPTIQQFFDPDGNAGTNGLFRMDDGDGGV--HLYWLDEIEKVV--pt
Z4WHK6_9XANT/1-92                 ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHDNEGLNGQLRLDLLDASQEPQWIWMDRIVAVHPL..
G2LUU0_9XANT/1-92                 ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDDHDNEGLNGQLRLDQLDASQEPQWIWMDRIVAVHPL..
A0A031H8F9_9GAMM/1-92             ...MSRIAPRIHTDSAQIARLEALLPQLQGETEVQLTLHDGRRLLGTVAVQPTLQQYRNDAGDEGSNGQLRLDDLDAPVQQHYVWLDEIASIRRL..
G7THQ7_XANOB/1-85                 ...-------MYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRASLQTYLDEHRNEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPM..
M4W5B8_XANCI/1-92                 ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHDNEGLNGQLRLDLLDASQEPQWIWMDRIVAVHPL..
I0KJ35_STEMA/1-92                 ...MSRIAPRIHTDPAQIARLEALLPQLEGETQVELILHDGRRLLGTVAVRPTVQQYRNVTGDEGSNGQLRLDDYDTPVQQHHVWLDEIASINRL..
M5CTS6_STEMA/1-92                 ...MSRIAPRIHTDPAQIARLEALLPQLEGETQVELTLQDGRRLLGTIAVKPTVQQYRNDAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRL..
G0JW47_STEMA/1-92                 ...MSRIAPRIHTDPAQIARLEGLLPQLEGETQVELTLHDGRRLLGTVAVRPTVQQYRNEAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRL..
M3DZI7_STEMA/1-92                 ...MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTLAVRPTVQQYRNVAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRL..
A0A021W4G2_9GAMM/1-92             ...MTQTADRVYTDPADIDRLRQLIGRLPDARLVDIVLIDGSRQSAVVTVRPSLQTFLDGEGNEGINAVVRLDDPEVANGSRYLWIDEILDIHPI..
I4WE05_9GAMM/1-92                 ...MGRAAERVYTDRASIQQLESLVEELPANGHVVLLLKDGSSCDGVVVTRPNVQMFRDADEREGINATVRLERPDVPEWSQQVWLDQIVRVEHL..
G0CB37_XANCA/1-92                 ...MPKYAPHVYTEQAQIATLEHWVKLLDGQERVRIELDDGSMIAGTVAVRPTIQTYRDEQEREGSNGQLRIDHLDASQEPQWIWMDRIVAVHPM..
F0CBI7_9XANT/1-92                 ...MSKYAPNVYSEQVQIATLEHWVSLLGGQERVQIELDDGSTISGTVAVRPTIQTYLDAQQREGINGQLRLDHLDAAQEPQWIWMDRIVAVHPL..
Q2P7T6_XANOM/1-92                 ...MPKYAPHVYSEQVQIATLEPWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHRKEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPM..
W7FU03_STEMA/1-92                 ...MSRIAPRIHTDSAQIARLEALLPQLEGETEVQLILHDGRRLLGTVAVQPTLQQYRNDAGDEGSNGQLRLDDLDAPVQQHHVWLDEIASIRRL..
A0A023NWL5_9GAMM/1-92             ...MGRFAERVYTDPVHIRRLESLVQELPTNGHVVLLLKDGSAYDGVVSERPNVQLFRDGQENEGINGVVRLERPDVPDWSCYVWLGDIRRVEHL..
K8ZF20_XANCT/1-92                 ...MSKYADAVHTDPDAIAALQAWLPKLPDQAQMLLYLDDGSQVSGTVSVRPTLQTFRDRQEREGVNGVVRLDDLLHPEQQHYVWLDRIREVAPL..
I4W241_9GAMM/1-92                 ...MGRQARHVYTDQASIHQLESLVEELPANGHVVLLLKDGSSCDGVVSTRPNVQVFRDAEEREGINATVQLERPDVPEWTRQVWLDQIVRVEHL..
B8L195_9GAMM/1-92                 ...MSRIAPRIHTDPAQIARLEALLPQLEGETQVQLTLHDGRRLLGTVAVKPTLQQYRNDAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIDRL..
K8FTW9_9XANT/1-92                 ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHDNEGLNGQLRLDLLDASQEPQWIWMDRIVAVHPL..
W4SDL5_9XANT/1-92                 ...MSRYAPHVYSEQVQIATLEHWVSLLGGQERVRVELDDGSMISGTVAVRPSIQTYLDDQQREGLNGQLRIDQLDAAQEPHWIWMDRIVAVHPL..
L7HF60_XANCT/1-50                 ..m--------HPDPCAIAALQAWRPTWPDQAQALLRLDDGRQVSGTVSVRPSLQTFRD------------------------------------p.
B2FLQ5_STRMK/1-92                 ...MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRVDDYDTPVQQHHVWLDEIASIRRL..
U4M2S5_9XANT/1-92                 ...MPKYAPHVYSEQVQIATLEHWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDDHDNEGVNGQLRLDQLDASQEPQWIWMDRIVAVHPL..
I4WW93_9GAMM/1-92                 ...MGRAAERVYTDPASIRRLESLIGELPANGHVVLLLKDGSSCDGVVVTRPNVQMFRDADEREGINATVKLERPDVPAWSRQVWLDQIARVEHV..
T5KL72_STEMA/1-92                 ...MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNAAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASINRL..
A0A022M2V1_STEMA/1-92             ...MSRIAPRIHTDPAQIARLEALLPQLEGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASINRL..
#=GC SS_cons                      ...---B-S--B--HHHHHHHHHHHHCTTTT-EEEEEETTS-EEEEEECC---EEEEE-TT--EEEEEEEEEE-SSTT-SEEEEEGGGEEEEEE-..
#=GC seq_cons                     ...Ms+hAP+VYo-psQIApLEphVs.L-Gpp+VclpL-DGShlsGTVAVRPolQsYhD-pssEGlNGQLRLDpLDssppspalWhDcIsuV+.L..
//
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