GenomeNet

Database: Pfam
Entry: DUF3247
LinkDB: DUF3247
Original site: DUF3247 
#=GF ID   DUF3247
#=GF AC   PF11607.7
#=GF DE   Protein of unknown function (DUF3247)
#=GF AU   Pollington JE
#=GF SE   pdb_2e12
#=GF GA   25.00 25.00;
#=GF TC   69.90 69.70;
#=GF NC   21.60 17.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF RN   [1]
#=GF RM   17546661
#=GF RT   XC5848, an ORFan protein from Xanthomonas campestris, adopts a
#=GF RT   novel variant of Sm-like motif. 
#=GF RA   Chin KH, Ruan SK, Wang AH, Chou SH; 
#=GF RL   Proteins. 2007;68:1006-1010.
#=GF DR   INTERPRO; IPR021649;
#=GF CC   This family of proteins is the protein product of the gene
#=GF CC   XC5848 from Xanthomonas campestris. The protein has no known
#=GF CC   function however its structure has been determined. The protein
#=GF CC   adopts a Lsm fold however differences with the fold were
#=GF CC   observed at the N-terminal and internal regions [1].
#=GF SQ   29
#=GS A0A0A0ELA9_9GAMM/1-96  AC A0A0A0ELA9.1
#=GS A0A0S2DHG7_LYSEN/1-91  AC A0A0S2DHG7.1
#=GS A0A0R0E115_9GAMM/1-90  AC A0A0R0E115.1
#=GS G7UVI6_PSEUP/1-92      AC G7UVI6.1
#=GS A0A0G9HJA9_9GAMM/1-92  AC A0A0G9HJA9.1
#=GS M4NSR9_9GAMM/1-92      AC M4NSR9.1
#=GS I4VR42_9GAMM/1-92      AC I4VR42.1
#=GS Q8P4R5_XANCP/1-92      AC Q8P4R5.1
#=GS Q8P4R5_XANCP/1-92      DR PDB; 2E12 B; 1-92;
#=GS Q8P4R5_XANCP/1-92      DR PDB; 2E12 A; 1-92;
#=GS A0A0A0M9T1_9GAMM/1-95  AC A0A0A0M9T1.1
#=GS A0A0H1ATE9_9GAMM/1-92  AC A0A0H1ATE9.1
#=GS A0A0Q8F7I3_9GAMM/1-92  AC A0A0Q8F7I3.1
#=GS A0A0S2FBI1_9GAMM/1-92  AC A0A0S2FBI1.1
#=GS A0A0Q9ESZ4_9GAMM/1-94  AC A0A0Q9ESZ4.1
#=GS A0A0R0AFX2_9GAMM/1-92  AC A0A0R0AFX2.1
#=GS A0A108U5M9_9GAMM/1-92  AC A0A108U5M9.1
#=GS A0A0D0S7C3_9GAMM/1-96  AC A0A0D0S7C3.1
#=GS A0A0R0CB76_9GAMM/1-90  AC A0A0R0CB76.1
#=GS A0A0R0CAX8_9GAMM/1-92  AC A0A0R0CAX8.1
#=GS A0A0R0CVF4_9GAMM/1-92  AC A0A0R0CVF4.1
#=GS I4WDL0_9GAMM/11-102    AC I4WDL0.1
#=GS A0A023NWL5_9GAMM/1-92  AC A0A023NWL5.1
#=GS Q5H517_XANOR/11-102    AC Q5H517.1
#=GS I4W241_9GAMM/1-92      AC I4W241.1
#=GS A0A0F3L1A6_9GAMM/1-92  AC A0A0F3L1A6.1
#=GS A0A0R0DBP2_9GAMM/1-90  AC A0A0R0DBP2.1
#=GS A0A0A0EWF4_9GAMM/1-96  AC A0A0A0EWF4.1
#=GS B2FLQ5_STRMK/1-92      AC B2FLQ5.1
#=GS A0A0Q9QGI5_9GAMM/1-92  AC A0A0Q9QGI5.1
#=GS E6WUD4_PSEUU/3-92      AC E6WUD4.1
A0A0A0ELA9_9GAMM/1-96             ...MTRNAERVHTDPADIARIQQQIEQLPNGAHVSLRMEDGSQVEGIVAARPVAQVFFGPDGEEGTNAVLRLEQ..P..A....MyhpeTARV..HDVWVDRILAIKRL..
A0A0S2DHG7_LYSEN/1-91             ...MTKLADRVYRDPADLRRLTALVEQLPDEGLVDLQLVDGSWRAAVVTTRPSLQTFLDRDGREGINAVVRIDD..P..R....T....G-RS..DYLWIDELAQVRPI..
A0A0R0E115_9GAMM/1-90             ...MSRTAPRVHVDQATIERLKELQLALDAELTVELHLRDGTTRVGTLPDRPTVQQFLDPQGNEGTNGQLRIDT..G..D....A....GI--..HIVWLDEVERFV--rl
G7UVI6_PSEUP/1-92                 ...MSKYAERVHTDRNKIAELEALVTQLPSEARVALLLEDGRQLRGTVPVQPTVQIFRDAQEQEGVNALLRLDD..L..A....D....PSHQ..HHLWLDQVRKVTPL..
A0A0G9HJA9_9GAMM/1-92             ...MGREADTIHTDKGTIGRLQALIHELRDNAKVILHLQDGSTMQGIVAVVPTTQTFVDGDGTEGINGVVKLID..N..D....R....PDWS..ATVSLDTIARVEHL..
M4NSR9_9GAMM/1-92                 ...MGRAAERVYTDPASIRRLESLIGELPANGHVVLLLKDGSSCDGVVVTRPNVQLFRDADEREGINATVKLER..P..D....V....PAWS..RQVWLDQIARVEHV..
I4VR42_9GAMM/1-92                 ...MTRQATHVYTEPRDIQRFEMLVQALSGGARVRLHLVDGQHCEGVVCARPTVQMFYDGTGKEGVNGVVELEH..L..N....L....SDWR..RRVWFDQITDVEQL..
Q8P4R5_XANCP/1-92                 ...MPKYAPHVYTEQAQIATLEHWVKLLDGQERVRIELDDGSMIAGTVAVRPTIQTYRDEQEREGSNGQLRIDH..L..D....A....SQEP..QWIWMDRIVAVHPM..
#=GR Q8P4R5_XANCP/1-92      SS    ...---B-S--B--HHHHHHHHHHHHCTTTT-EEEEEETTS-EEEEEECC---EEEEE-TT--EEEEEEEEEE-..S..S....T....T-SE..EEEEGGGEEEEEE-..
A0A0A0M9T1_9GAMM/1-95             ...MNPTAERVFTRPEDIEHLRGQIRELCEGAFVRLTLRDGDVQQGTVSARPQAQVFFGPDGEEGTNATVRLVD..P..Am.dpV....GATQ..REFWLDQIVRIERL..
A0A0H1ATE9_9GAMM/1-92             ...MSQTPPRIHVERAELDALERSIRLLDDEAIVQVTIADGTQVEGVVSARPALEVFRTADGAEGHNALLRLDD..L..E....D....PAVP..HYVWVGEITAIDR-i.
A0A0Q8F7I3_9GAMM/1-92             ...MTEAPQHLYTRQADIARMEALIQQLPDEVSVEIQLADGGSITGTVPARPTVQVFRDADGHEGFNAVVRIDD..S..K....R....PNVV..HYLWLDRIATVTV-l.
A0A0S2FBI1_9GAMM/1-92             ...MTQLADRVHTDPAEIRRLSLLIERLPDEGLVDIVLVDGSRQVGVVATRPSLQTFLDAQGNEGANAVLRLED..I..R....G....GDRV..AYLWLDEILKVCPL..
A0A0Q9ESZ4_9GAMM/1-94             ...MSRNADHVYSAPADIARLEARIASLRDDARVELSLHDGRVLRGVVAALPSLQSFYGPGDVEGLNGVLRLEE..PlgG....D....ASRV..HDLWLDEIDAIRPL..
A0A0R0AFX2_9GAMM/1-92             ...MAKYAKHVYTDQAQIAALEAWVRQLPGEARVQLTLDDGSRLLGTVAVQPTVQSFRDESENEGVNGLLRLDD..L..D....S....PVQQ..HLVWLDSIREVRPL..
A0A108U5M9_9GAMM/1-92             ...MTQTADRVYTDPADIDRLRQLIGRLPDARLVDIVLIDGSRQSAVVTVRPSLQTFLDGEGNEGINAVVRLDD..P..E....V....ANGS..RYLWIDEILDIHPI..
A0A0D0S7C3_9GAMM/1-96             ...MSRKIEHVHTDPAAIARIQERIEQLPGGAHVSLLMEDGEEIEGIVVVRPSAQLFFGPDGTEGTNARVRLSQ..P..AmyqpE....SVAN..TDVWLDRIVLVRRL..
A0A0R0CB76_9GAMM/1-90             ...MARTAPRIHLDQATINRLKELQRGLDAEMRVELHMHDGSVLVGTLPERPSVQQFLDAQGNEGTNGQLRLDT..G..D....G....GF--..HLVWLDEIDSFTR-l.
A0A0R0CAX8_9GAMM/1-92             ...MAQYAPHVYSDPMTIAQLETLAGELPGQARVMLVLDDGARVAGTVTMRPVLRHFADCDECPGVNATVRLDD..L..V....R....ISQQ..HMLWLDSVRQVLR-l.
A0A0R0CVF4_9GAMM/1-92             mhe---RPQQIYADQADIDRLEALISSLDDEAIVALTLHDGRRIKGVVSVRPTLQLFRDDAGQQGFNSVLRLDD..A..E....Q....PQQT..HYLWLDQIAQVDHL..
I4WDL0_9GAMM/11-102               ...MAQYVERVCVDPADIRRLESLVADLQGNGHVSIVQKDGSVCEGVVSVRPTMQVMRDQSGREGINAELRLER..P..R....E....PAWS..RRIWLDQIERVEHL..
A0A023NWL5_9GAMM/1-92             ...MGRFAERVYTDPVHIRRLESLVQELPTNGHVVLLLKDGSAYDGVVSERPNVQLFRDGQENEGINGVVRLER..P..D....V....PDWS..CYVWLGDIRRVEHL..
Q5H517_XANOR/11-102               ...MPKYAPHVYSEQVQIATLEPWVSLLDGQERVRIELDDGSMISGTVAVRPSLQTYLDEHRKEGVNGQLRLDQ..L..D....A....SQEP..QWIWMDRIVAVHPM..
I4W241_9GAMM/1-92                 ...MGRQARHVYTDQASIHQLESLVEELPANGHVVLLLKDGSSCDGVVSTRPNVQVFRDAEEREGINATVQLER..P..D....V....PEWT..RQVWLDQIVRVEHL..
A0A0F3L1A6_9GAMM/1-92             ...MGREADTVRTDQGSIARLQGLVKELPDNAKVRLHLRDGSVVKGIVTVVPTVQNFVDANGVEGVNGVVKLID..N..D....R....PDWS..ATVSLDTIARVEHL..
A0A0R0DBP2_9GAMM/1-90             ...MTQRAPRIHTEAAAIDRLKALQSELDAEMIAELHMQDGSVLVGTVVERPAIQQFLDSDGNEGSNGLLRLDS..G..E....A....PVQ-..-LLWLDQVQRVVR-i.
A0A0A0EWF4_9GAMM/1-96             ...MTRNAERVHTDPAAIAAMHRNIERLPNGAHVVLGLEDGSEVTGIVAARPVAQVFFGPDGSEGMNAVVRIEQpaL..D....H....PEAAgwRDLWVDSIREVRRL..
B2FLQ5_STRMK/1-92                 ...MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRVDD..Y..D....T....PVQQ..HHVWLDEIASIRRL..
A0A0Q9QGI5_9GAMM/1-92             ...MGRHAERVVTDPAAIRRLEALVGVLPTNGHVALTLENGDVCDGFVSERPNVQLFLDPDGNEGINGVVRLER..P..D....E....PDWS..RFVWLDQVARIEH-f.
E6WUD4_PSEUU/3-92                 sia---IAPRVHTDPQAIERLKTLQLELDGELEVELHMRDGSVLRGTLPERPTIQQFFDPDGNAGTNGLFRMDD..G..D....G....GV--..HLYWLDEIEKVV--pt
#=GC SS_cons                      ...---B-S--B--HHHHHHHHHHHHCTTTT-EEEEEETTS-EEEEEECC---EEEEE-TT--EEEEEEEEEE-..S..S....T....T-SE..EEEEGGGEEEEEE-..
#=GC seq_cons                     ...Ms+tAp+VaTD.AsIsRLcsLlppLsspu+VpLpLcDGothpGsVssRPolQhFhDssGpEGhNullRL-c..s..-....s....sshs..+hlWLDpItpVcpl..
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