GenomeNet

Database: Pfam
Entry: DUF346
LinkDB: DUF346
Original site: DUF346 
#=GF ID   DUF346
#=GF AC   PF03984.8
#=GF DE   Repeat of unknown function (DUF346)  
#=GF AU   Yeats C
#=GF SE   Yeats C
#=GF GA   21.20 21.20;
#=GF TC   21.20 21.40;
#=GF NC   21.00 21.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Repeat
#=GF WK   Domain_of_unknown_function
#=GF RN   [1]
#=GF RM   12625841
#=GF RT   New Knowledge from Old: In silico discovery of novel protein
#=GF RT   domains in Streptomyces coelicolor. 
#=GF RA   Yeats C, Bentley S, Bateman A; 
#=GF RL   BMC Microbiol 2003;3:3-3.
#=GF DR   INTERPRO; IPR007132;
#=GF CC   This repeat was found as seven tandem copies in one protein. It
#=GF CC   is predicted to be composed of beta-strands. Thus it is likely
#=GF CC   that it forms a beta-propeller structure. It is found in
#=GF CC   association with BNR repeats, which also form a  beta-propeller.
#=GF SQ   31
#=GS A7GAA7_CLOBL/184-221  AC A7GAA7.1
#=GS D9X8U8_STRVR/150-187  AC D9X8U8.1
#=GS B1IF10_CLOBK/184-221  AC B1IF10.1
#=GS D9X8U8_STRVR/50-90    AC D9X8U8.1
#=GS C5PIX8_COCP7/27-69    AC C5PIX8.1
#=GS Q898J4_CLOTE/185-221  AC Q898J4.1
#=GS D5W2I1_CLOB2/184-221  AC D5W2I1.1
#=GS A8M381_SALAI/424-465  AC A8M381.1
#=GS E8ZRH0_CLOB0/184-221  AC E8ZRH0.1
#=GS A8M381_SALAI/239-281  AC A8M381.1
#=GS Q9S1V9_STRCO/482-522  AC Q9S1V9.1
#=GS Q9S1V9_STRCO/709-748  AC Q9S1V9.1
#=GS G9F159_CLOSG/230-266  AC G9F159.1
#=GS E9D661_COCPS/177-216  AC E9D661.1
#=GS A5HYP3_CLOBH/184-221  AC A5HYP3.1
#=GS E9D661_COCPS/27-69    AC E9D661.1
#=GS A8M381_SALAI/470-506  AC A8M381.1
#=GS Q9S1V9_STRCO/527-569  AC Q9S1V9.1
#=GS A8M381_SALAI/332-373  AC A8M381.1
#=GS B1KUF1_CLOBM/184-221  AC B1KUF1.1
#=GS A7FR02_CLOB1/184-221  AC A7FR02.1
#=GS A8M381_SALAI/378-419  AC A8M381.1
#=GS Q9S1V9_STRCO/574-613  AC Q9S1V9.1
#=GS Q9S1V9_STRCO/665-704  AC Q9S1V9.1
#=GS G9F159_CLOSG/184-221  AC G9F159.1
#=GS C5PIX8_COCP7/177-216  AC C5PIX8.1
#=GS Q9S1V9_STRCO/618-653  AC Q9S1V9.1
#=GS D9X8U8_STRVR/247-283  AC D9X8U8.1
#=GS A8M381_SALAI/286-327  AC A8M381.1
#=GS C4JDY7_UNCRE/27-69    AC C4JDY7.1
#=GS Q9S1V9_STRCO/438-477  AC Q9S1V9.1
A7GAA7_CLOBL/184-221             .ldc-----FARGTDNQLHHKWW-.DGSSW.S--QWealGGSLTSGP--ga
D9X8U8_STRVR/150-187             ....----VFVRGADGGLHHRWQT.GTGGP.W-SGWgplGGRLVSDPA-v.
B1IF10_CLOBK/184-221             .ldc-----FARGTDNQLHHKWW-.DGSSW.S--QWealGGSLTSGP--ga
D9X8U8_STRVR/50-90               .klv----VFVRGTDGALWHTWQS.ETGAW.-APDWvslGGRLASDPA-v.
C5PIX8_COCP7/27-69               grld----VFGLGTNNALYHKWYQ.RQWGP.SQNDWeylGGTFSSQPTA..
Q898J4_CLOTE/185-221             ...d----VFARGRNNTLIHKWW-.DGSRW.S--DWedlGGNLSSAPCA..
D5W2I1_CLOB2/184-221             .ldc-----FARGTDNQLHHKWW-.DGSSW.S--QWealGGSLTSGP--ga
A8M381_SALAI/424-465             ....DQQHVFGRTASGDLVHWYWW.PGIDP.RVDDWg.aRGVVTGDPAG..
E8ZRH0_CLOB0/184-221             .ldc-----FARGTDNQLHHKWW-.DGSSW.S--QWealGGSLTSGP--ga
A8M381_SALAI/239-281             ....GQRHVFARGRDDTLRHWWFG.PGMSVpGLDDWd.tVGRVVSDPTG..
Q9S1V9_STRCO/482-522             ...v-QQHVLARGTDGSLIHRFW-.STTGL.SSQTWl.aAGTVAGAPTG..
Q9S1V9_STRCO/709-748             ....DTQHVYGAASDGTLSHWWWN.SAEGT.KRETW...GGSIATTSAW..
G9F159_CLOSG/230-266             ...d----VFARGRNNTLIHRWWN.GTSWS.Q---WedlGGFLTSAPCA..
E9D661_COCPS/177-216             ....----IFGLGTDNRMYHKWWDgSRWGP.SQTGWenlGGVFNSQPVA..
A5HYP3_CLOBH/184-221             .ldc-----FARGTDNQLHHKWW-.DGSSW.S--QWealGGSLTSGP--ga
E9D661_COCPS/27-69               grld----VFGLGTNNALYHKWYQ.RQWGP.SQNDWeylGGTFSSQPTA..
A8M381_SALAI/470-506             ....GQHHVFYRLGDGTLEHRFVDdTTGQI.VTDNW...GGSLA-----p.
Q9S1V9_STRCO/527-569             ....GQQHAWVRMTDGRLLHTWWDaGTASL.KQQAWa.aAGTLAGDPVA..
A8M381_SALAI/332-373             ....DQQHVFGRTASGGLIHWYWW.PGISP.GTDDWg.vRSGVASDPTG..
B1KUF1_CLOBM/184-221             .ldc-----FARGTDNQLHHKWW-.DGSSW.S--QWealGGSLTSGP--ga
A7FR02_CLOB1/184-221             .ldc-----FARGTDNQLHHKWW-.DGSSW.S--QWealGGSLTSGP--ga
A8M381_SALAI/378-419             ....GQHHVFFRDSDGGLGHRFFDdLSGTF.GGGVW..pGAVFVGNPHA..
Q9S1V9_STRCO/574-613             ....EQQHVWATGTDGRLHHWWWT.KGPGI.RHELW...PGSARGAATA..
Q9S1V9_STRCO/665-704             ....GQQHVFARITGNTLAHWWWD.PTTGN.NYAVW...PGPISSDPVA..
G9F159_CLOSG/184-221             .ldc-----FARGTDNQLHHKWWD.-GSSW.S--QWqalGGNLTSGP--ga
C5PIX8_COCP7/177-216             ....----IFGLGTDNRMYHKWWDgSRWGP.SQTGWenlGGVFNSQPVA..
Q9S1V9_STRCO/618-653             ....GQLHVYAADPENRLTHWWWD.STDQV.V----...KGQVLSTPTA..
D9X8U8_STRVR/247-283             ....----VFARGADGGLHHRWQT.GTGGP.W-SDWgplGGRITDDP--s.
A8M381_SALAI/286-327             ....SQQHVFYRNPDGWLEHRFYDlDTGRV.TGGVW..pGGRFVGNPFA..
C4JDY7_UNCRE/27-69               grld----VFGLGTNNALYHKWYQ.RQWGP.SQNDWehlGGTFSSQPTA..
Q9S1V9_STRCO/438-477             ....EQLHLFAPTPAGDLGHWFEE.DDGTL.KRGTW...GTGIAGKTVA..
#=GC seq_cons                    ........VFuRGoDspLtH+WWp.sssuh.s.tsWt.lGGslsSsPsh..
//
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