GenomeNet

Database: Pfam
Entry: DUF4309
LinkDB: DUF4309
Original site: DUF4309 
#=GF ID   DUF4309
#=GF AC   PF14172.3
#=GF DE   Domain of unknown function (DUF4309)
#=GF AU   Eberhardt R
#=GF SE   Jackhmmer:O34960
#=GF GA   25.00 25.00;
#=GF TC   26.00 25.30;
#=GF NC   21.70 24.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF RN   [1]
#=GF RM   11532142
#=GF RT   Genome-wide analysis of the general stress response in Bacillus
#=GF RT   subtilis.
#=GF RA   Price CW, Fawcett P, Ceremonie H, Su N, Murphy CK, Youngman P;
#=GF RL   Mol Microbiol. 2001;41:757-774.
#=GF DR   INTERPRO; IPR025453;
#=GF CC   This family includes the B. subtilis YjgB protein Swiss:O34960,
#=GF CC   which is functionally uncharacterised. This is not a homologue
#=GF CC   of E. coli YjgB, Swiss: P27250. Expression of B. subtilis YjgB
#=GF CC   is regulated by the alternative transcription factor sigma-B
#=GF CC   [1]. This family is found in bacteria, and is approximately 140
#=GF CC   amino acids in length.
#=GF SQ   44
#=GS A0A075LS92_9BACI/55-190   AC A0A075LS92.1
#=GS V9W6U3_9BACL/110-242      AC V9W6U3.1
#=GS D3E8N0_GEOS4/57-196       AC D3E8N0.1
#=GS R4K5N0_CLOPA/85-219       AC R4K5N0.1
#=GS C0Z8F5_BREBN/45-178       AC C0Z8F5.1
#=GS A7GQ46_BACCN/80-207       AC A7GQ46.1
#=GS J7J151_DESMD/62-208       AC J7J151.1
#=GS Q9KB43_BACHD/44-175       AC Q9KB43.1
#=GS A0A0D5ZCH0_PAEPS/127-260  AC A0A0D5ZCH0.1
#=GS D3FUA4_BACPE/52-173       AC D3FUA4.1
#=GS B1HX00_LYSSC/62-197       AC B1HX00.1
#=GS C0Z6K8_BREBN/118-250      AC C0Z6K8.1
#=GS F6DUI9_DESRL/67-201       AC F6DUI9.1
#=GS W0EAP8_9FIRM/51-185       AC W0EAP8.1
#=GS A0A089M754_9BACL/90-217   AC A0A089M754.1
#=GS C5D8A7_GEOSW/234-359      AC C5D8A7.1
#=GS G7M4A2_9CLOT/93-227       AC G7M4A2.1
#=GS A0A089MFW1_9BACL/88-215   AC A0A089MFW1.1
#=GS C0Z6K8_BREBN/268-401      AC C0Z6K8.1
#=GS Q81C92_BACCR/85-212       AC Q81C92.1
#=GS X4Z8J4_9BACL/92-219       AC X4Z8J4.1
#=GS D5DJ51_BACMD/53-191       AC D5DJ51.1
#=GS A0A075R4I3_BRELA/140-286  AC A0A075R4I3.1
#=GS U5MR07_CLOSA/75-209       AC U5MR07.1
#=GS U5L7Q5_9BACI/269-390      AC U5L7Q5.1
#=GS C8WQ55_ALIAD/107-238      AC C8WQ55.1
#=GS C6D3T6_PAESJ/51-191       AC C6D3T6.1
#=GS I3VRL4_THESW/85-217       AC I3VRL4.1
#=GS A5N1I1_CLOK5/1-80         AC A5N1I1.1
#=GS A0A089LRS4_9BACL/98-225   AC A0A089LRS4.1
#=GS G7WA72_DESOD/527-662      AC G7WA72.1
#=GS M1MNJ5_9CLOT/77-211       AC M1MNJ5.1
#=GS I4D7B6_DESAJ/531-665      AC I4D7B6.1
#=GS A0A075R4I3_BRELA/303-435  AC A0A075R4I3.1
#=GS A0A075R4I7_BRELA/46-187   AC A0A075R4I7.1
#=GS Q8XI71_CLOPE/88-217       AC Q8XI71.1
#=GS G7W8T8_DESOD/81-221       AC G7W8T8.1
#=GS Q24YP2_DESHY/79-213       AC Q24YP2.1
#=GS F5LEV2_9BACL/83-210       AC F5LEV2.1
#=GS A6LYS0_CLOB8/79-210       AC A6LYS0.1
#=GS Q81PC7_BACAN/76-203       AC Q81PC7.1
#=GS YJGB_BACSU/51-189         AC O34960.1
#=GS YJGB_BACSU/51-189         DR PDB; 4YGT A; 51-189;
#=GS A8MGG8_ALKOO/77-218       AC A8MGG8.1
#=GS A8FAZ3_BACP2/47-191       AC A8FAZ3.1
A0A075LS92_9BACI/55-190              ........LQTIYTKASEGS..SIGvaDNFLIGKTTRADVIDSLGEP----YLSDAFDiYHAEMGNPGFSF...AYS.QDGTLKEIRYLgtnverQTNLG.............SITP....AVLEDQLGKAD............AITSIS.-Q....TNQHKYQ......YDTG-DFELEFIVNDE.TL......QVDHVNL-v...........................
V9W6U3_9BACL/110-242                 ........LQEIMENARKGK..VRS..SEFTARNTQIDQIEAKLGKPTS--FTQAGYG.YYASYGRQSLAF...GYNmETGVVFDVRSY......EKKLK.............NLTL....SMIKKELGEPT............DIRKYKdKN....HDDTIYV......YQAGEQYELKFIIPPN.TG......RVDHISVF............................
D3E8N0_GEOS4/57-196                  ........LNSFYKPALKGQ..FPGavSGLTIGKSTKQDVYKAIGEPSVPGKDADAFDvYGANMGNPGYAF...SY-.KLNKIREMRYFgtnverQTNIG.............GITM....KMLKKNWFAPD............ATTTFKnGK....TKQTKLT......YHRG-AYKLEFIFNSS.TD......-LDHINLL............................
R4K5N0_CLOPA/85-219                  ........LDNIIALSKQGK..VFN..SDFPAKDTNIDSVESKWGKADNSEWVASAKG.LYSTYSKHNIVF...GSN.KGGQIFEVRSL......DKQLG.............NIYL....SMVKDKLGTPQ............HDVKVN.G-....--EEIIG......YKMGNDFKILFVFPEP.TNqh.anpIMSHYSVL............................
C0Z8F5_BREBN/45-178                  ........LEKVKNGQLEGV..LIG..----IGAT-KKEVLDKIGTPVKSGNSEYGFTvNYEGFH---LQF...-ED.YAKSIDEVKDTskvvlmNAEPK.............TVGMtgkpEEIKRTLGEPS............--REFMdDS....GDHTFIL.....eYENN-GNLLRFTFDSK.ES......PVKYVTL-r...........................
A7GQ46_BACCN/80-207                  ........IKNILEQAKQGK..VPN..VSVAAHTGDIEEVEKEWGKADKTE--PAGKG.MYATYTKRNVVI...GFN.KGSQIFDVRSN......HPNLR.............SLTL....QDIENALGKPT............-TVKTN.G-....-DDKIYI......YKVNKQFELKFVIPNS.TG......KVDHISVF............................
J7J151_DESMD/62-208                  .......l-LNIKGAAEQGK..VIN..CNFPVKTTVIEDVKSQWGEPEKVDWVAAAKG.NYATYSKQAMVF...GFN.KGSQIFEVRSF......DPQLQ.............QLSM....AKTKELFGDPAynaktkvengpfYDKKVN.G-....--EEIIG......YTVSSEYKIEFVFPIP.TAtd.snpMMDHYLV-l...........................
Q9KB43_BACHD/44-175                  .......i-QQIMGLASESQqtISS..VPFAVGDS-LKKVEKSWGPADDLSTVAAN--.-YWSRH---IRFlydGSM.GRKPITAIDDF......DPKLQ.............TIHL....SDVKRLVGEPV............SEVEQE.G-....--MYYVT......YTDYENYKIVFNFESAwM-......--------npdpilhmytve................
A0A0D5ZCH0_PAEPS/127-260             ......aa--AILSAAKQGT..LPNlpKGLGLGTS-SDLLFELWGKSDSGSTGPMR--.SYAKYH-TDLVL...--D.GNDKVTEITSS......DSKYK.............KLLI....KQVIDELGQPT............ETVDTSrDIsgtaEANYKIN......NTSGLSYYLVFSYQTK.TQ......KVSYVRLY............................
D3FUA4_BACPE/52-173                  iekgfngi------------..FFP..TDQALGES-QTDVLESLGEPSEKGL--YEGG.NYYTYDRTTYIF...SS-.-ENYLLEAIMM......DISDY.............RVSV....EEMKRALGTPD............-RSELD.EL....DGYWTYS......YELD-DYTLFFETSEE.--......--------gsplefvwlv..................
B1HX00_LYSSC/62-197                  ........IQDIVNLAGEGK..VPD..VPFVAGESDSRTVHQQWGDPQQVT--ESANG.QYEDFLQQEITI...GF-.QSTKAFDIRSF......KADIR.............NIHL....ADIKNKLGEPD............EVRYYQdTK....TNQIILV......YQVNDHYQLKWILPKP.TDgd.anpAVHHISVY............................
C0Z6K8_BREBN/118-250                 ........LSQIRSNAQEGR..VIS..LPFVLEKT-IDDIEKGWGKPEKTY---TANGlIYSAYPKKEVVF...GYN.KGMQLVDMHRT......DSRLQ.............QISL....SAVEKIWGKPS............RI---S.EF....GDRTIYT......YDVTSKYQVKLIFQGT.KS......--------tnkedlilveyqly..............
F6DUI9_DESRL/67-201                  ........LNKIMQLARQGK..VIN..CEFTANTTVIETVTGQWGEPDTMDYVPQAKG.TYATYTKHHVVF...GFN.KGSQIFDVRSY......DLEIK.............KLTL....AEVKKTLGTPE............MSRTYQ.G-....--QDIIG......YRAGTDYKLLFIFPQA.TPee.anpYVDHVNVF............................
W0EAP8_9FIRM/51-185                  .......l-LNMRKSAEQGK..VIN..SDFAVKTAVLEDVKKKWGEPDKTDWVPAAKG.TYVTYSDQALVV...GFN.KGMQIFEVRSF......DQKLQ.............KVSL....AKTKEVYGAPA............YDVKLN.G-....--EEIIG......YTAGQEFKIELVFPEP.THnn.pnpLLDHYLV-l...........................
A0A089M754_9BACL/90-217              .......l-EVLLQLAGEGK..VPG..VEYAAHTGLIDDVEAAWGEPDTKE--AAGKG.IYATYSKKHVVF...GFN.KGSRIFDVRSS......AADLQ.............KLTL....KEIEAVLGKPE............-NRAVN.G-....-GDKIYM......YQAGKQYELKFIIPDA.SG......TVDHISVF............................
C5D8A7_GEOSW/234-359                 .......e--EFKQLLNKGK..LKG..IPVSLGMS-YDEAKAYAGKPVEEGYDEGGICaFYENY-----QF...CND.SESETVTLLKY......HLLEE.............AIQF....KHIEKVLGTPK............ES-FLD.EM....TETYTWI......YSLSNGMTLI------.--......--------fyssssspdglieave............
G7M4A2_9CLOT/93-227                  ........LNDIKTKAQEGK..IIN..SDYQAGTSNIQEVEEKLGKEDKSEWVADAKG.NYSTYSKNNVVF...GSN.KGGRIFEIRSF......DQRLN.............QISL....SMVEDFFGTPP............HDVTSS.G-....--EKIIG......YVSGEDFKILFVFKAP.SDsd.ndpKLDHYSVL............................
A0A089MFW1_9BACL/88-215              ........LKELLELAKKGK..VPG..VKYAAHTGLIDEVEADWGKPDQQE--SAGKG.IYATYTDKHVVF...GFN.KGSLIFDVRSS......DSTLQ.............KLTL....KQIEATLGKPD............-DTKVN.G-....-DDKIYT......YQANDQYQLKFIIPSS.TG......TVDHISVF............................
C0Z6K8_BREBN/268-401                 ........LQSVRDLAGKGQ..VFG..SQYRLEKDVFDDAEKELGKPDVVSFV---NGiTYNTYRDLNLVF...AFN.KGMQIVDIRSY......DPRLQ.............AITL....AEVRKTLGEPT............SKVTTG.G-....--QTIYT......YKVTPDYELKFIFSGI.MTddpntiYIDHVNIY............................
Q81C92_BACCR/85-212                  .......v-KDLFELAKEGK..VPN..VPFGAHTGDIEEIEKAWGKANKTEY--TGNG.MYATFTNKNVVF...GFN.KGSQVFDVRSY......HAELK.............LITL....QEIEKALGKPS............---SVK.EN....GEDKIYV......YKVNNQYELKFVIPKS.TG......KVDHISVF............................
X4Z8J4_9BACL/92-219                  ........LQELLELAKQGK..APG..IPFAAHTDLIDDVKKAWGEPEKEE--SAGKG.IYATYNAKHVVI...GFN.KGSLIFDVRSS......AADLQ.............QLTL....KQIEEALGKPN............-DVKTS.G-....-NDSIYI......YNAGAQYQLKFVILKS.TG......QVDHISVF............................
D5DJ51_BACMD/53-191                  ........INEIYNAAVKGE..VPRltADFKIGKTLRQDVRNQFGPP--PEGSSNNFDyYHAEMGHPGYAF...GYD.QNNVVNEIRYFgtnverQTNLG.............SITQ....ANLKKELGQPN............FTGKVKgDG....TTQTKYT......YHAG-AYDLEFIFDDT.K-......TLNHVNL-v...........................
A0A075R4I3_BRELA/140-286             ........LENVMERARSGK..VIN..ADIAVKTSLADDIKKVWGESKGQD--QVRFGlPTANYPEKSLAF...AYN.KGEVLVEIIST......DSRLT.............ALNK....EQVEQVLGKPQ............FVQQYT.D-....--QLKYS......YPAGGDYQLVFYFTPI.--......--------slnnssnttepsardhdvspqiehvsvv
U5MR07_CLOSA/75-209                  ........LNDIKTLAQEGK..IIN..SEFADKSSNISDAEGKLGKADKSEWVTDAKG.NYSTYSKYNVVF...GSN.KGGRIFEVRSF......DSRLN.............KISL....SMVKKYFGTPA............HDVTAN.G-....--EEIIG......YVAGQEFKILFVFKVP.KDsn.ddpKLDHYSVL............................
U5L7Q5_9BACI/269-390                 .....ekg---IIDKASQGI..LTG..SQYPIGTN-INDVKKA--SPPSIEAGKKGKY.AYLKYP--EVTY...FYD.EATQEVAVVSI......PGIRL.............QSTL....ADIKKMFGEPF............RESRR-.--....GTEVLAI......YAAG-KYNIDVYADQ-.--......--------sgkiksvql...................
C8WQ55_ALIAD/107-238                 .......v-RSVMQAALRGS..LPG..VPFADGEN-IDQVIKAWGSPSSQAY--AGSG.VYFTYRAKDVAF...GLN.KGEQIFDVRSY......AQALR.............TLTY....HEIAGVLGAPG............SVRYTQ.D-....--SYIYL......YPAGPDYQLLWVFPRL.PSgh.sgpTVDHVSVF............................
C6D3T6_PAESJ/51-191                  ........LMSFYKPALNGQ..FPN.fHGFTIGSTTHESVIKAIGEAESPAKDSDDFDvYHSEMGHPGYAI...SY-.KLGKIKEMRYFgtnverQTNLG.............GISV....KMLVQHWGTPN............ESVQIKsGK....TVQKKIT......YVRG-KYQLEFIFDGT.NG.....tNLNHINL-v...........................
I3VRL4_THESW/85-217                  ........INQIVSLAKEGK..VIN..CDFVTGKTTIDDIEKVYGNPDKQEYISSAKG.TYTTFTKKDLVF...GFN.KGMQVFETRSF......DPRLQ.............AISR....SDIENVLGKAP............YKATVS.GT....PNQTVLG......YTMNSDYKLEFVISDT.TN......LVDHVNVL............................
A5N1I1_CLOK5/1-80                    ....msll------------..---..-------------------------------.------------...-CN.KGSRIFEVRSF......DSGIK.............KITL....SKVKEVFGTPA............YDVKSN.G-....--EEIIG......YVATKEFKILFVFPQS.ESnn.kdlLLDHYSVL............................
A0A089LRS4_9BACL/98-225              ........LQELMELAKQGH..APG..IPFAAHTGMIEDVKAAWGKPDIEE--GAGKG.IYATYQAKQAVI...GFN.KGSVIIDVRSS......ADELH.............RLTL....QNIEASLGNPD............-EITTS.G-....-SDHIYT......YKAGEQFQLKFVIPDQ.AG......TVDHISVY............................
G7WA72_DESOD/527-662                 ........LSNMMISAKQGK..VVF.nDDFAAKTNTIEDIKKVWGKPDKTDWVSSLNE.AYDTYSSHSLVF...GVN.KGDQITEIRSY......DSRLK.............GITL....NEAEKVLGTPA............YDVTSN.G-....--QEIIG......YEAGSEFKLEMVFTQP.TSsa.pnpVIDHYNVL............................
M1MNJ5_9CLOT/77-211                  ........LKNIKTLAEEGK..IIN..SDFADKSFNISDVEKKLGKADNAEWVTDAKG.YYSTYSKYKVVF...GSN.KGGRIFEVRSF......DSSLN.............NISL....SNVEKYFGSPN............HNVTVN.N-....--EKILG......YVAGADYKILFVFKVG.ADsk.edpKLDHYSVL............................
I4D7B6_DESAJ/531-665                 ........LANMMIMGQQGK..VLF..SDFPVKTTTIEDIEKLWGKADKTEYIPSASG.QFATYSAHNIVF...GIN.KGDQIFEVRSY......DSRIK.............GITL....KMAKQVLGTPA............YDTQIN.G-....--QEIIG......YTTNSQFKVEMIFPQP.TSsn.pnpVIDHYNVL............................
A0A075R4I3_BRELA/303-435             ........LQRINESASKGL..LVE..-DFVVGRTTKEQIEQRWGKADKTDT--PYKT.TYAIYRKHGTVV...GYD.SKGLLIEIRSF......DLRLQ.............DIHL....SEVKTALGEKL............-KGYFN.-R....NKEQIFT......YPLNSEFQLQVVISPV.TNkn.tdpLVDHINV-i...........................
A0A075R4I7_BRELA/46-187              .......l-LDIKEQAEKGK..LKG..IKTSIGTA-YNEIEKAYGKP-KVANVECW-T.YSYDHPKTTANF...FYD.HDSCGEELNQV......KPTTKlnritveptyynvQLTE....HDIRQGLGEPT............NAYNNE.-A....YGGYEMY......YNVG-KYII-FI----.--......--------qvdnnssdrkvssisv............
Q8XI71_CLOPE/88-217                  ........LKDIKEKALKGE..IID..YDFKLGDS-IYDVIDKLGKPSSENYVAEAKG.NYFNFDSYNLSF...GCN.KGDQIFEIRSL......NKDLK.............SLDL....NNVENFFGKPD............YTVTTK.S-....-KEKIIG......YKITKDFKILFVFNTS.TY......KLDHYSVL............................
G7W8T8_DESOD/81-221                  ..llniaw------FAFGGE..LAD.nNHFSVKTSRIADVERAWGKPDSTVYIEAANG.TYATYASHHTVL...GFN.KQGQIFEIRSF......EHGLK.............SISP....EEVKDVLATPPmaa......ppaYDNEFD.G-....--QMILG......YLAGPEFKLEFVFTPT.TAas..dlSLDHYNI-l...........................
Q24YP2_DESHY/79-213                  .......l-VSIRELAEKGK..VIN..SDFAAKLTVIEDVEKKWGKPDSVDWVAAAKG.NYAVYADHAMVF...GFN.KGSQIFEVRSF......DKQLQ.............NITL....SKVKNSFGTPA............YTATVG.E-....--EDIIG......YTAGEEFKILLVFPKA.TSan.pdpALDHYSVL............................
F5LEV2_9BACL/83-210                  .......v-KGIMELARKGQ..IAG..VEYAAHTGLIDDVEKKWGKPDKQE--SAGKG.QYATYTKRGVAF...GFN.KGMLIFDVRSY......DKALQ.............QLAL....ADIKQTLGEPA............-EVTVN.G-....-GDTIYT......YGAGSRYQLKFVIPKS.TG......KVDHISVY............................
A6LYS0_CLOB8/79-210                  ........LDNIKKLSEEGK..IIN..CDFPVKTSTLQDIEKKWGKADKSDWVGEAKG.NYATYSSKNVVF...GTN.KGDQVFEVRSF......DSQLK.............QISL....SDVKDFFGQPD............HDVTSN.G-....--ERIIG......YKSGSEFKILFVFKDS.GNd....pKLYHYSVL............................
Q81PC7_BACAN/76-203                  ........VKNLFELAKEGK..VPN..VPFAAHTGDIEEIEKAWGKADKTE--QAGNG.MYATFTNKNVSF...GFN.KGSQVFDVRSY......HAELK.............SITL....QEIEKALGKPN............---SVK.GN....GEDKIYV......YKVNKQFELKFIIPKS.TG......KVNHISVF............................
YJGB_BACSU/51-189                    ........VKNLYNTAYKGE..MPQqaQGLTINKSTKGDVHAAFGEPERPVGGDNRFDlYHWNMGQPGYGF...SYH.KDMTISEIRYFgtgverQLNLG.............GVTP....EVLQKQLGPVN............RVLTVP.-F....TDEIDYV......YDTG-RYELHFVIGTD.Q-......TADHVNL-k...........................
#=GR YJGB_BACSU/51-189         SS    ........TTT--SGGGTT-..TTSBHHHHHHHH-S-SB-SBTTB-SEEE--BTTB-EEEEEE-TTSBEEE...EE-.TTGGGTGGG--HHHHHHHH-S-.............EEEE....EEEEEE-SSSS............XXXXXX.-X....XXXXXXX......XXXX-XXXXXXXXXXX.X-......XXXXXXX-X...........................
A8MGG8_ALKOO/77-218                  .......k-EKLLKSAYEGK..IDG..IEFGIGDK-GTDIIGKMGEPDESDYFLGG--.FYLSYD--DIMFltnGYD.ETGKVVSILFF......DKNAEvfg.......iklGMTT....KEIEKVLGTAD............EVISAK.DN....EQSELYMdnwttrYKLG-SYELTFVHEDK.DG......PVEWFSLW............................
A8FAZ3_BACP2/47-191                  ........LNTIYELAHKGQ..MPYyaKGFKIGVQTKKDVHHKLGNP-YPETGQSSFDlYHAEMGNPGFAF...HYD.AKGKIDEIRYFgtnvekETNIG.............GMTP....SLLKKQLGQAD............SVSTIP.Q-....TKEKKYV......YRTG-DYELEFIVGHD.PDisqqklTVLHINL-v...........................
#=GC SS_cons                         ........TTT--SGGGTT-..TTSBHHHHHHHH-S-SB-SBTTB-SEEE--BTTB-EEEEEE-TTSBEEE...EE-.TTGGGTGGG--HHHHHHHH-S-.............EEEE....EEEEEE-SSSS............XXXXXX.-X....XXXXXXX......XXXX-XXXXXXXXXXX.X-......XXXXXXX-X...........................
#=GC seq_cons                        ........lpslhphApcGc..l.s..ssFsstss.lc-VcctaGcP-psph.tsupG.hYusYsppslsF...GaN.KuspIh-lRSa......cspLp.............ploL....pplcchLGpPs.............ssphs.s.......ppIhs......YpsGtcacLpFlhsps.ss......hlDHhslh............................
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