GenomeNet

Database: Pfam
Entry: DUF905
LinkDB: DUF905
Original site: DUF905 
#=GF ID   DUF905
#=GF AC   PF06006.9
#=GF DE   Bacterial protein of unknown function (DUF905)
#=GF AU   Moxon SJ
#=GF SE   Pfam-B_7072 (release 9.0)
#=GF GA   22.30 22.30;
#=GF TC   31.90 51.90;
#=GF NC   18.70 18.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF RN   [1]
#=GF RM   19455708
#=GF RT   NMR structure of protein YvyC from Bacillus subtilis reveals
#=GF RT   unexpected structural similarity between two PFAM families.
#=GF RA   Eletsky A, Sukumaran DK, Xiao R, Acton TB, Rost B, Montelione
#=GF RA   GT, Szyperski T;
#=GF RL   Proteins. 2009;76:1037-1041.
#=GF DR   INTERPRO; IPR009253;
#=GF CC   This family consists of several short hypothetical
#=GF CC   Enterobacteria proteins of unknown function. Structural analysis
#=GF CC   of the surface features of the protein YvyC has revealed a
#=GF CC   single cluster of highly conserved residues on the surface.
#=GF CC   Additionally, these residues fall into two groups which lie
#=GF CC   within the two largest of the three cavities identified over the
#=GF CC   surface. The conclusion from this is that these two cavities
#=GF CC   with, Leu 58, Glu 75, Ile 82, and Glu 83 and Pro 86, conserved,
#=GF CC   are likely to be important for the molecular function and
#=GF CC   reflect the cavities found on the surface of the FlaG proteins
#=GF CC   in Pfam:PF03646.
#=GF SQ   11
#=GS A0A0A1BA84_9ENTR/6-77  AC A0A0A1BA84.1
#=GS YUBL_YERPE/6-74        AC Q7ARC3.1
#=GS A6TIR7_KLEP7/10-78     AC A6TIR7.1
#=GS YPJI_ECOLI/15-85       AC P58095.1
#=GS YUBL_SALTY/10-78       AC Q93GP6.1
#=GS B2VB73_ERWT9/19-63     AC B2VB73.1
#=GS YKFF_ECOLI/5-74        AC P75677.1
#=GS YKFF_ECOLI/5-74        DR PDB; 2HJJ A; 10-74;
#=GS A6TIE0_KLEP7/10-80     AC A6TIE0.1
#=GS A0A0A0ZE56_9ENTR/6-77  AC A0A0A0ZE56.1
#=GS A0A0A6ZR76_SHIDY/3-49  AC A0A0A6ZR76.1
#=GS G9Z3Z6_9ENTR/5-74      AC G9Z3Z6.1
A0A0A1BA84_9ENTR/6-77             snesp-------LSLAQARA.......VAAGYQNVFIENLQPAgHFQIAIRNHrdhDRQLIWRNWNYEPDAYDALNSHLQSHGLK-a.....
YUBL_YERPE/6-74                   ....a-VLPDDTFTREQAEV.......VAAQYTNVAIEDDQGA.HFRLVVRQ-...NGEMVWRTWNFEPGGTYWLNRYIADYGIRK......
A6TIR7_KLEP7/10-78                .....KCLADGSFTREQATA.......VAEQFQNVTIEDDQGT.HFRLVVRR-...DGEMIWRGWNFEKGAAYWLNRYIEFYGIRK......
YPJI_ECOLI/15-85                  .sglp----------QWASAdcvagplVSAGITDINIEDDQGI.HVRLIVRDA...EGRMVWRAWNFEPDAGEGFNRYIHRSGIRT......
YUBL_SALTY/10-78                  .....KSLPDGTFTHEQAEA.......VAAQYQNVAIEDDQGT.HLRLVVRK-...DGEMVWRGWNFEPGGEYWLNRCIESHGIRK......
B2VB73_ERWT9/19-63                ....a-ALGNGTFTREKALN.......VTAAFSNVFIDDDQGS.HFRLVVREP...SGSFI-------------------------......
YKFF_ECOLI/5-74                   ....v-LLPPGPFTRRQAQA.......VTTTYSNITLEDDQGS.HFRLVVRDT...EGRMVWRAWNFEPDAGEGLNRYIRTSGIRT......
#=GR YKFF_ECOLI/5-74        SS    ....X----HHHHHHHHHH-.......-SSS--EEEEE-SS--.EEEEESSST...HHHHHHHTTTTTTTXXXXXXXXXXXXXXXX......
A6TIE0_KLEP7/10-80                .....VSLPDGTFTREQAQV.......VAAQYQNVAIEDDQGT.HFRLVVRHK..dDGSMIWRVWNFEPGGEDIMNRYIRDYGVRK......
A0A0A0ZE56_9ENTR/6-77             snesp-------LSLAQARA.......VAAGYQNVFIENLQPAgHFQIAIRNHrdhDRQLIWRNWNYEPDAYDALNSHLQSHGLK-a.....
A0A0A6ZR76_SHIDY/3-49             ....r-LLPEVPFSREQAAV.......ITTAYRNVFIEDDQGT.HFRRVIRNA...E-----------------------------tdagrf
G9Z3Z6_9ENTR/5-74                 ....h-MLPPGPFTRQLAEA.......VIRRYHNISIEDDQGS.HFRLVVRDS...EGRMVWRAWCFEPDAGEELNCYIRKSGI--lr....
#=GC SS_cons                      ....X----HHHHHHHHHH-.......-SSS--EEEEE-SS--.EEEEESSST...HHHHHHHTTTTTTTXXXXXXXXXXXXXXXX......
#=GC seq_cons                     .......LssssFTRcQApA.......VuAtYpNVsIEDDQGo.HFRLVVRct...-GpMlWRsWNFEPsut.hLNpaIpp.Gl+.......
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