GenomeNet

Database: Pfam
Entry: E6
LinkDB: E6
Original site: E6 
#=GF ID   E6
#=GF AC   PF00518.15
#=GF DE   Early Protein (E6)
#=GF AU   Finn RD
#=GF SE   Pfam-B_57 (release 1.0)
#=GF GA   20.80 20.80;
#=GF TC   20.90 27.80;
#=GF NC   20.40 20.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR001334;
#=GF SQ   35
#=GS VE6_COPV6/33-140         AC Q89808.1
#=GS Q647I1_9PAPI/25-134      AC Q647I1.1
#=GS Q0QLX6_9PAPI/25-134      AC Q0QLX6.1
#=GS E7C0H0_9PAPI/21-130      AC E7C0H0.1
#=GS VE6_HPV16/37-146         AC P03126.1
#=GS VE6_HPV16/37-146         DR PDB; 2LJX A; 30-80;
#=GS VE6_HPV16/37-146         DR PDB; 2LJZ A; 80-139;
#=GS VE6_HPV16/37-146         DR PDB; 4XR8 H; 30-139;
#=GS VE6_HPV16/37-146         DR PDB; 4XR8 F; 30-139;
#=GS VE6_HPV16/37-146         DR PDB; 4GIZ D; 30-139;
#=GS VE6_HPV16/37-146         DR PDB; 4GIZ C; 30-139;
#=GS VE6_HPV16/37-146         DR PDB; 2LJY A; 30-70;
#=GS VE6_HPV16/37-146         DR PDB; 2LJY B; 30-70;
#=GS VE6_HPV16/37-146         DR PDB; 2FK4 A; 3-62;
#=GS Q30BJ3_9PAPI/20-135      AC Q30BJ3.1
#=GS G3DRD0_9PAPI/45-154      AC G3DRD0.1
#=GS Q0QII1_9PAPI/25-136      AC Q0QII1.1
#=GS VE6_MNPVA/23-132         AC P30735.2
#=GS Q5UUY5_9PAPI/24-133      AC Q5UUY5.1
#=GS C5DTQ1_ZYGRC/1-72        AC C5DTQ1.1
#=GS VE6_HPV04/27-136         AC Q07854.1
#=GS D5FL25_9PAPI/26-135      AC D5FL25.1
#=GS Q5IRF6_9PAPI/46-155      AC Q5IRF6.1
#=GS B7TQN7_9PAPI/24-133      AC B7TQN7.1
#=GS VE6_HPV11/31-140         AC P04019.1
#=GS C0ITA5_9PAPI/86-197      AC C0ITA5.1
#=GS Q8UZ19_PSPVP/27-136      AC Q8UZ19.1
#=GS VE6_PAPVE/11-119         AC P11331.1
#=GS VE6_BPV5/15-124          AC Q8BDG7.1
#=GS Q8QQC2_ECPVO/12-122      AC Q8QQC2.1
#=GS W5QK87_9PAPI/25-134      AC W5QK87.1
#=GS V9P7V8_9PAPI/28-137      AC V9P7V8.1
#=GS VE6_HPV41/42-151         AC P27555.1
#=GS VE6_HPV05/41-150         AC P06930.2
#=GS B4XYE0_9PAPI/27-136      AC B4XYE0.1
#=GS VE6_CRPVK/27-140         AC P03127.1
#=GS Q1I127_9PAPI/27-136      AC Q1I127.1
#=GS B8R1U7_9PAPI/25-134      AC B8R1U7.1
#=GS F2VIS0_9PAPI/29-138      AC F2VIS0.1
#=GS B2KKW7_9PAPI/26-135      AC B2KKW7.1
#=GS VE6_HPV1A/26-135         AC P06929.1
#=GS F2X1C2_9PAPI/34-143      AC F2X1C2.1
#=GS B5SPY1_9PAPI/26-135      AC B5SPY1.1
#=GS A0A0J7KG63_LASNI/29-138  AC A0A0J7KG63.1
VE6_COPV6/33-140                    .CKFCGNNITNIEKLLFDKAGFQLI..WRENN..AFGCCQYCARVCSVVE..QCFG..SHRHLTSEELVNVT-KTLQQLSLRCLGCLSILSEADKE-.........LCAELNDFSVVRGK.TRGLCSLC...............
Q647I1_9PAPI/25-134                 .CVFCNCSMLLEDKIAFENKCLCLV..WRWGC..PFGVCRPCCTERAFAD..CVKN..ATCTVEGDGLERIFMKPLASLCVRCTFCLKPLTVEEKHA.........CVLRRSPFMLVRKY.WRNTCDSC...............
Q0QLX6_9PAPI/25-134                 .CVFCGNLLSFEDRVSFDFKVLQVS..WKNGL..PHACCTSCARSICSRE..VSQY..TSEEISYRQFVQRVGQGFYWIPVRCTCCLGLVTTTQKIQ.........ALYRRQKFKKVRGR.WRTLCTYC...............
E7C0H0_9PAPI/21-130                 .CVFCKAHLSRLDLVEFREKQWRLI..WKQGK..AYAACGDCVKAVLFIE..RTCY..PTVWRSVRGVEELEGKPICHIKVTCQYCGHVLSNDEKAL.........KAWEGKALRRTRNR.WCGSCFDC...............
VE6_HPV16/37-146                    .CVYCKQQLLRREVYDFAFRDLCIV..YRDGN..PYAVCDKCLKFYSKIS..EYRH..YCYSLYGTTLEQQYNKPLCDLLIRCINCQKPLCPEEKQR.........HLDKKQRFHNIRGR.WTGRCMSC...............
#=GR VE6_HPV16/37-146         SS    .BTTTXSBXXHHHHHHHHHTTXBXE..EETTE..EEBXXHHHHHHHHHHH..HHHH..EEEEEEHHHHHHHHTSTGGGSEEEETTT--B--HHHHHH.........HHHTTSEEEEETTE.EEEHHHHH...............
Q30BJ3_9PAPI/20-135                 .CMCCKRSLTNDERKDFLNKGLKTFkkWNNGKkrSFGCCETCCVFLANEEaeKTRA..EEIHLEADGVQLFCGAPLRDISMNCRYCLAVLTFYDKYL.........NKENRLPFCLRRKK.WRGTCEKC...............
G3DRD0_9PAPI/45-154                 .CGNCRTVLSLTDLRRFDFSGFRLV..WRDLL..PYGTCQQCARFYAVNE..FLTS..YKYSKKGKDVEKEEKKLIDELRIRCKVCLAYLCIVEKLH.........MIEEGEPFDKVADK.WRGFCHIC...............
Q0QII1_9PAPI/25-136                 .CYFCKKPLDPQDKHRFSVRDLRLT..YKDGK..PYGSCSRCTRQAARHE..RETA.lHTVPVTLHEIELLEGVGIDRIVLRCTNCLKPLAFTEKLA.........YAQGGFYAIALGNQkYRAVCRYC...............
VE6_MNPVA/23-132                    .CTFCSRFLTQEELTAFDFSAFNLV..WRGRC..AHGICTACARVCASLD..LFLH..HQNSRPLADVLRDENLTLHGLKARCRVCMKILSVTEKLE.........CAERGESFAKVRGQ.WRARCRIC...............
Q5UUY5_9PAPI/24-133                 .CAFCNDILTFLDKSAFAFGQFTIA..WRDGY..PYGICRHCARTAAAYD..MKFH..LQKTVCVTEVESVTGIAFRDINVRCSACLRTLLPHEKGV.........LEAQHVSVHLIRNR.WLARCTLC...............
C5DTQ1_ZYGRC/1-72                   m------------------------..-----..--GTGRICLQCHRELQ..QNPT..SRAKNQGKKMYEVRDRMISPIEIRCIRCHRRLSRNDKC-.........--------------.--------fdstlrpvqlalglv
VE6_HPV04/27-136                    .CIFCSHTVDLADLALFYLKKLSLV..FRGNC..YYACCSECLRLSALFE..QENY..FQCSIKAVHLEEIAQKKIKEICIRCICCLRLLDIVEKLD.........LLYSDETCYLIRGL.WRGYCRNC...............
D5FL25_9PAPI/26-135                 .CIFCGEYLTAADIVHFESAPLALL..WRFGI..PFGCCIRCCNYAGMYE..AYRY..FQGLIPAAWVECITGKTLFELDVRCVTCLRRCNLSEKLS.........VLWRQSDFFVIRNK.LKTVCQIC...............
Q5IRF6_9PAPI/46-155                 .CKYCKKCLSLLDVYLFDQTVLNVL..WSDGT..PAAVCTLCLRLLARLE..FRAR..HMFSCTVQHIPLLLYRPFVTCTVRCVRCLMPLTTVEKEF.........LARQHTVVHFVGRS.LRTLCTHC...............
B7TQN7_9PAPI/24-133                 .CLFCKRELTVTDKIAFDLKKLNLV..LRADG..IYGCCRTCCKATAEFE..NAKY..LQMVVEADGVESFTGRGILEVYMRCWECMKELEAVEKCM.........QIIREEPFRLVRGG.WKGLCAIC...............
VE6_HPV11/31-140                    .CVFCRNALTTAEIYAYAYKNLKVV..WRDNF..PFAACACCLELQGKIN..QYRH..FNYAAYAPTVEEETNEDILKVLIRCYLCHKPLCEIEKLK.........HILGKARFIKLNNQ.WKGRCLHC...............
C0ITA5_9PAPI/86-197                 .CIFCGKPCGYADDIWWNTADLNLV..MRDGK..RKASCQTCMRAACRLE..RHLYqsSRNVYTARGVERACGQSVYRVSVRCTHCGKRLTRDEKRW.........IEIEGAGFYQVRQR.WRALCYDC...............
Q8UZ19_PSPVP/27-136                 .CVFCRTNLRTFEVWSFMTRNLKVL..WRKGF..PFACCPKCLEVQALVA..WLRH..FERSGNAKAVEEDTGESLGDLPMRCVGCFKPMSASEKQF.........QIEDKRPFTKVSGY.WRGFCLNC...............
VE6_PAPVE/11-119                    .CIWCKKGLDKVDAKRCHEKKIRIA..CRNGK..HCAVCTSCLENGLYLE..RSLF..PGRPIYPGDLYEPDPWVMFN-DIRCMYCGGCLTRDEKER.........HRLFCEDFWIFRHQ.VRGRCYLC...............
VE6_BPV5/15-124                     .CLQCKKALGSLDALKCKNHKYRRV..HRGGK..PYGMCQICLEALLQLE..RQEF..PWTLLLPKDFVKVLGRLPGDYCVRCYYCGCVLSDSEKDR.........HALDHEGYLYVRGR.ARGRCYSC...............
Q8QQC2_ECPVO/12-122                 .CMWCHEPLTNLDALNFLECNLSMV..WRNGT..PYGACKACVEFQCFLE..VYLH..SEGDYRPREVAQEVGRSLCDVRVRCWSCSKPLTKNEKQE.........IELLGKPLTKVRHKeWRALCYNC...............
W5QK87_9PAPI/25-134                 .CIFCTCHLDIGDLCAFMHNGLKLK..WIKSF..PYAACHRCTLLQARVL..AWRH..QTRAAYAVTVEEDCGQPLGNIQIRCVVCTAILRPEDKLR.........HREHHRRFILAAGY.WRGRCGHC...............
V9P7V8_9PAPI/28-137                 .CKFCYSFLTTNDKLLFDLFGLQLV..YRGGY..PYGACQPCLSSCCKIE..FLMF..YEDTLDGHGVVATTGKSLQEHPVRCVLCAKLLTPSEKDS.........VVHFGEKVHKVRGR.FKAKCGLC...............
VE6_HPV41/42-151                    .CHYCYKILSVLDIYAFDQSCLYLS..WGEGG..PTGICSQCTRVLARLE..FTAR..HEVSCAASRLPHFIGQSLSDLEVRCVRCLALLQSVEKDY.........ILREDLSVHRIGGI.WRGTCVRC...............
VE6_HPV05/41-150                    .CNFCGNFLNYLEACEFDYKRLSLI..WKDYC..VFACCRVCCGATATYE..FNQF..YEQTVLGRDIELASGLSIFDIDIRCQTCLAFLDIIEKLD.........CCGRGLPFHKVRNA.WKGICRQC...............
B4XYE0_9PAPI/27-136                 .CVFCRKVLEDIEKWSCRNREINVV..WKKEY..PYAVCCKCLEVQAILD..LLRY..FERSGSAKTVEEDTGKPLGDLRVRCYGCYKPLTATEKLF.........HVEDQRPFTKVCNQ.WRGICTNC...............
VE6_CRPVK/27-140                    .CIFCGKLLGAAEKQLFKCTGLCIV..WHKGW..PYGTCRDCTVLSCALD..LYCH..LALTAPALEAEALVGQEISSWFMRCTVCGRRLTIPEKIElrarnctlcCIDKGQYFQ-----.WRGHCSSC...............
Q1I127_9PAPI/27-136                 .CNFCRAPLSVQDLHLFDQKYFQLL..YKYDG..VYAFCSACARALAEAE..HSRF..CDIELSGSDMVAIVRAPLHRILVRCRKCFKLLSFVEKLG.........MIYCGLNFCSVRSW.WRGVCRYC...............
B8R1U7_9PAPI/25-134                 .CVFCGTLMSRTDLDHFDYAALQLT..WKDES..PYGSCVRCLLASSRYE..REHF..CTGIWTLHEWYGPLNGPLFQDFIRCLYCYAPLTPGEKLQ.........LLLDNSCIHRIRGR.FRAPCRLC...............
F2VIS0_9PAPI/29-138                 .CIFCKKHLSEPDIWQFIYKNLLVV..WRHGW..PFGICWRCVDFQAKLE..RLRH..YERSAYAATVEIDTGLPLSALQIRCTGCWKQLSFTEKYS.........HIRWNLRFHKIANN.WRGFCNFC...............
B2KKW7_9PAPI/26-135                 .CVYCKKWLSASDKGAFDRKCLKLI..WKKGF..PYGVCALCLYYNLQVS..LWRH..FRRSAYGLTLEKETGIPLGDLLIRCMQCGKILLAEEKVV.........MVEEGTRFHNVCGV.WRGQCLMC...............
VE6_HPV1A/26-135                    .CNFCNYFLSNAEKLLFDHFDLHLV..WRDNL..VFGCCQGCARTVSLLE..FVLY..YQESYEVPEIEEILDRPLLQIELRCVTCIKKLSVAEKLE.........VVSNGERVHRVRNR.LKAKCSLC...............
F2X1C2_9PAPI/34-143                 .CTFCGRFMSEQDRKDFDSKTLQLQ..WKHGN..AHGCCGRCARAAARHE..RRHY..YQGSLTGQELLTVYGAGVLTLPIRCPLCLRKLGTTEILS.........AIGGGRYFDLVRGR.WKARCRFC...............
B5SPY1_9PAPI/26-135                 .CIFCNRHLSVGDLLSFMWKELQIV..WRKDW..PYGACSPCIKLQAEVQ..CWRD..FHSSVFGETLEKEEGQPLANITVRCTVCWKKLGGYEKIV.........LVDNGQRFHYIGTG.IRGLCLFC...............
A0A0J7KG63_LASNI/29-138             .CVYCKLPLSDADVLAFAVKELSVV..WRKGF..PYGACEKCLIAAAKLR..QYRY..WHYSCYGDTVETETGIPIPQLFMRCYICHKPLCWEEKEA.........LLVGNKRFHKIAGQ.WTGHCMNC...............
#=GC SS_cons                        .BTTTXSBXXHHHHHHHHHTTXBXE..EETTE..EEBXXHHHHHHHHHHH..HHHH..EEEEEEHHHHHHHHTSTGGGSEEEETTT--B--HHHHHH.........HHHTTSEEEEETTE.EEEHHHHH...............
#=GC seq_cons                       .ChFCpphLohtDhhtFchpsLpll..W+cGh..PaGsCppChchtuplE..thpa..hptshpupslEphsGpsltplplRChhCh+hLshsEKht.........hlhptpsFphlRsp.WRGhCthC...............
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