GenomeNet

Database: Pfam
Entry: Equine_IAV_S2
LinkDB: Equine_IAV_S2
Original site: Equine_IAV_S2 
#=GF ID   Equine_IAV_S2
#=GF AC   PF06502.6
#=GF DE   Equine infectious anaemia virus S2 protein
#=GF AU   Moxon SJ
#=GF SE   Pfam-B_15780 (release 10.0)
#=GF GA   18.90 18.90;
#=GF TC   20.80 22.30;
#=GF NC   17.00 15.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR009480;
#=GF CC   This family consists of several equine infectious anaemia virus
#=GF CC   S2 proteins. The function of this family is unknown.
#=GF SQ   41
#=GS E9KUE0_9RETR/1-67   AC E9KUE0.1
#=GS F6KFU9_9RETR/1-67   AC F6KFU9.1
#=GS C4PBI2_9RETR/1-67   AC C4PBI2.1
#=GS F6KFX7_9RETR/1-67   AC F6KFX7.1
#=GS E9KUE6_9RETR/1-67   AC E9KUE6.1
#=GS F6KFW6_9RETR/1-67   AC F6KFW6.1
#=GS F6KFU0_9RETR/1-67   AC F6KFU0.1
#=GS D0UGY5_9RETR/1-67   AC D0UGY5.1
#=GS A8WEI1_9RETR/7-41   AC A8WEI1.1
#=GS E2E2N0_9RETR/1-67   AC E2E2N0.1
#=GS D0UGY2_9RETR/1-67   AC D0UGY2.1
#=GS F6KFV7_9RETR/1-67   AC F6KFV7.1
#=GS Q9EP40_9RETR/1-65   AC Q9EP40.1
#=GS O93207_9RETR/1-65   AC O93207.1
#=GS F6KFX5_9RETR/1-67   AC F6KFX5.1
#=GS E9KUD4_9RETR/1-67   AC E9KUD4.1
#=GS F6KFT7_9RETR/1-67   AC F6KFT7.1
#=GS D0UGZ6_9RETR/1-67   AC D0UGZ6.1
#=GS E9KUA4_9RETR/1-67   AC E9KUA4.1
#=GS F6KFT6_9RETR/1-67   AC F6KFT6.1
#=GS E9KU86_9RETR/1-67   AC E9KU86.1
#=GS Q9EP45_9RETR/1-63   AC Q9EP45.1
#=GS E9KUB6_9RETR/1-67   AC E9KUB6.1
#=GS E9KUC2_9RETR/1-67   AC E9KUC2.1
#=GS Q9E6G0_9RETR/1-65   AC Q9E6G0.1
#=GS E9KUB0_9RETR/1-67   AC E9KUB0.1
#=GS D0UGW7_9RETR/1-67   AC D0UGW7.1
#=GS E9KU92_9RETR/1-67   AC E9KU92.1
#=GS Q992J4_9RETR/1-67   AC Q992J4.1
#=GS Q992K0_9RETR/1-67   AC Q992K0.1
#=GS F6KFX3_9RETR/1-67   AC F6KFX3.1
#=GS F6KFW0_9RETR/1-67   AC F6KFW0.1
#=GS F6KFV5_9RETR/1-67   AC F6KFV5.1
#=GS E9KUF2_9RETR/1-67   AC E9KUF2.1
#=GS F6KFX6_9RETR/1-67   AC F6KFX6.1
#=GS D0UGY9_9RETR/1-67   AC D0UGY9.1
#=GS G9FHJ5_9CAUD/51-92  AC G9FHJ5.1
#=GS F6KFW5_9RETR/1-67   AC F6KFW5.1
#=GS Q89751_9RETR/1-65   AC Q89751.1
#=GS C4PBI1_9RETR/1-67   AC C4PBI1.1
#=GS E9KU98_9RETR/1-67   AC E9KU98.1
E9KUE0_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.FQGEYQPLSPNKQNQQTHKKEIIWYFNPIVIMIAIKKKWQRQETQDTKK....
F6KFU9_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHKKGIIWYINPIVIMIAIKKKWRRQETQDTKK....
C4PBI2_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHRKGIIWYINPIVIMIAIKKKWQRQETQDTKK....
F6KFX7_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHRKGIIWYINPIVIMTAIKKKWQRQETQDTKK....
E9KUE6_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQGKYQPLSPNKQNQQTHKKEIIWYINPIVIMIAIKKKWQRQETQDTKK....
F6KFW6_9RETR/1-67              .....MGLFGKRVTWSALHSMGV.SQGEYQPLSPNKQNQQTHKKGITWYINPIVIMTAIKQKWQRQEAQDTKK....
F6KFU0_9RETR/1-67              .....MGLFGKGVTRSALHSMGV.SQGEYQPLSPNKQNQQTHRKGIIWYINPIVIMIAIKKKWQRQETQDTKK....
D0UGY5_9RETR/1-67              .....MGLFGKGVTWSASHSMGE.SQGESQLLLPNNTKRLTQEMRITQYFNPIVILTVIKARWQKEETQDTQK....
A8WEI1_9RETR/7-41              yggip------------------.--GGISTLSPNKQNQQTHKKGITWYINP---------------------ycyn
E2E2N0_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQGEYQPLPPNKQNQQTHKKGITWYINPIVIMTAIKQKWQRQETQDTKK....
D0UGY2_9RETR/1-67              .....MGPFGKGVTWSASHSMGE.SQGESQLLLPNNTKRLTQEMRIMQYFNPIVILTVIKARWQKEETQDTQK....
F6KFV7_9RETR/1-67              .....MGLFGKRVTRSALHSMGV.SQGEYQPLSPNKQNQQTHKKGITWYINPIVIMTAIKQKWQRQETQDTKK....
Q9EP40_9RETR/1-65              ...te--LFGKGVTWSASHSMGG.SQGESQPLLPNSQKNLSVRGIQCF--NLIVIMMTVRTAWQNRRKQETKK....
O93207_9RETR/1-65              .....MGVFGKGVTWSASHSMGE.SQGESQPLLPNSQKNLSVRRTQCF--NLIVIIMTVRTAWQNRRKQETKK....
F6KFX5_9RETR/1-67              .....MGLFGRGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHRKGITWYINPIVVMTAIRKKWQRQETQDTKK....
E9KUD4_9RETR/1-67              .....MGLFGKGVTWSALHSMGI.SQGEYQPLSPNKQNQQTHKKEIIWYINPIVIMVAIKKKWQRQETQDTKK....
F6KFT7_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHRKGITWYINPIVIMTAIKKKWQRQETQDTKK....
D0UGZ6_9RETR/1-67              .....MGLFGKGVTWSASHSMGE.SQGESQLLLPNNTKRLTHEMRIMQYFNPIVILTVIKARWQKEETQDTQK....
E9KUA4_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHKKEIIWYINPIVMMIAIKKKWQRQETQDTKK....
F6KFT6_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQGEYQPLSPNKQNRQTHRKGIIWYINPIVIMTAIKKKWQRQETQDTKK....
E9KU86_9RETR/1-67              .....MGLFGRGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHRKGITWYINPIVIMTAIKQKWQRQEAQDTKK....
Q9EP45_9RETR/1-63              .....MGLFGKGVTWSASHSMGG.SQGESQPLLPNSQKNLSVRGIQCF--NLIVIMMTV--AWQNRRKQETKK....
E9KUB6_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQEEYQPLSPNKQNQQTHRKEIIWYINPIVIMIAIKKKWQRQETQDTKK....
E9KUC2_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQGEYQPLSPNKQNQQIHKKEIIWYINPIVIMIAIKKKWQRQETQDTKK....
Q9E6G0_9RETR/1-65              .....MGLFGKGVTWSASHSMGG.SQGESQPLLPNSQKNPSMRKTQCF--NLIVIIMTVRTAWQNRRKQETKK....
E9KUB0_9RETR/1-67              .....MGLFGKEVTWSALHSMGV.SQGEYQPLSPNKQNQQTHKKEIIWYINPIVIMIAIKKKWQRQETQDTKK....
D0UGW7_9RETR/1-67              .....MGLFGKGVTWSASHSMGE.SQGESQLLLPNNTKRLTQEMRIMQYFNPIVILTVIKARWQKEETQDTQK....
E9KU92_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHKKEIIWYINPIVIMIAIKKKWQRQETQDTKK....
Q992J4_9RETR/1-67              .....MGLFGKGVTWSALHSVGV.SQGEYQPLSPNKQNQQTHRKEIIWYINPIVIMIAIKKKWQRQETQDTKK....
Q992K0_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHKKGITWYINPIVIMTAIKQKWQRQETQDTKK....
F6KFX3_9RETR/1-67              .....MGLFGRGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHRKGITWYINPIVIMTAIKKEWQRQETQDTKK....
F6KFW0_9RETR/1-67              .....MGLFGKGVTWAALHSMGV.SQGEYQPLSPNKQNQQTHKKGITWYINPIVIMTAIKRKWQRQETQDTKK....
F6KFV5_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHKKGITWYINPIVIMTAIKQKWQRRETQDTKK....
E9KUF2_9RETR/1-67              .....MGLFGKGVTWSALHSMGI.SQGEYQPLSPNKQNQQTHKKEIIWYINPIVIMIAIKKKWQRQETQDTKK....
F6KFX6_9RETR/1-67              .....MGLFGRGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHRKGITWYINPIVIMTAIKKKWQRQETQDTKK....
D0UGY9_9RETR/1-67              .....MGLFGKGVTWSASHSMGE.SQGKSQLLLPNNTKRLTQEMRIMQYFNPIVILTVIKARWQKEETQDTQK....
G9FHJ5_9CAUD/51-92             ..laa---YASGVTWSVPHSLGRcSSGASHPRLLSSRGQRSVRRT----------------------------cr..
F6KFW5_9RETR/1-67              .....MGLFGKRVTWSALHSMGV.SQGEYQPLSPNKQNQQTHKKGITWYINPIVIMTAIKQKWQRQETQDTKK....
Q89751_9RETR/1-65              .....MGLFGKGVTWSASHSMGG.SQGESQPLLPNSQKNLSVRRTQCF--NLIVIIMTVRTAWQNRRKQETKK....
C4PBI1_9RETR/1-67              .....MGLFGRGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHRKGITWYINPIVIMTAIKQKWQRQETQDTKK....
E9KU98_9RETR/1-67              .....MGLFGKGVTWSALHSMGV.SQGEYQPLSPNKQNQQTHKKGIIWYINPIVIMIAIKKKWQRQETQDTKK....
#=GC seq_cons                  .....MGLFGKGVTWSALHSMGV.SQGEYQPLSPNKQNQQTH+KtIhWYINPIVIMhAIKpKWQRQETQDTKK....
//
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