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Database: Pfam
Entry: FlaC_arch
LinkDB: FlaC_arch
Original site: FlaC_arch 
#=GF ID   FlaC_arch
#=GF AC   PF05377.6
#=GF DE   Flagella accessory protein C (FlaC)
#=GF AU   Studholme DJ
#=GF SE   Manual
#=GF GA   27.00 27.00;
#=GF TC   27.00 33.50;
#=GF NC   26.80 26.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   11250034
#=GF RT   The archaeal flagellum: a different kind of prokaryotic motility
#=GF RT   structure. 
#=GF RA   Thomas NA, Bardy SL, Jarrell KF; 
#=GF RL   FEMS Microbiol Rev 2001;25:147-174.
#=GF RN   [2]
#=GF RM   11717274
#=GF RT   Characterization of flagellum gene families of methanogenic
#=GF RT   archaea and localization of novel flagellum accessory proteins. 
#=GF RA   Thomas NA, Jarrell KF; 
#=GF RL   J Bacteriol 2001;183:7154-7164.
#=GF DR   INTERPRO; IPR008039;
#=GF CC   Although archaeal flagella appear superficially similar to those
#=GF CC   of bacteria, they are quite distinct[1]. In several archaea, the
#=GF CC   flagellin genes are followed immediately by the flagellar
#=GF CC   accessory genes flaCDEFGHIJ.	The gene products may have a role
#=GF CC   in translocation, secretion, or assembly of the flagellum. FlaC
#=GF CC   is a protein whose exact role is unknown but it has been shown
#=GF CC   to be membrane-associated (by immuno-blotting fractionated
#=GF CC   cells) [2].
#=GF SQ   60
#=GS C7NUX6_HALUD/126-180  AC C7NUX6.1
#=GS F4HN90_PYRSN/51-105   AC F4HN90.1
#=GS F8DA60_HALXS/121-175  AC F8DA60.1
#=GS A8F7Y9_THELT/104-169  AC A8F7Y9.1
#=GS F7XQ58_METZD/108-162  AC F7XQ58.1
#=GS E4NP52_HALBP/78-132   AC E4NP52.1
#=GS D4GWY6_HALVD/81-135   AC D4GWY6.1
#=GS C9REG2_METVM/24-78    AC C9REG2.1
#=GS C5A727_THEGJ/50-104   AC C5A727.1
#=GS B0R4I5_HALS3/90-144   AC B0R4I5.1
#=GS D7E7V7_METEZ/87-141   AC D7E7V7.1
#=GS A6UTM8_META3/54-108   AC A6UTM8.1
#=GS Q6LWP0_METMP/58-112   AC Q6LWP0.1
#=GS Q9C4R0_METMI/57-111   AC Q9C4R0.1
#=GS Q8U3W5_PYRFU/49-103   AC Q8U3W5.1
#=GS B5IEG3_ACIB4/62-130   AC B5IEG3.1
#=GS Q12VQ1_METBU/105-159  AC Q12VQ1.1
#=GS D3RYP5_FERPA/47-101   AC D3RYP5.1
#=GS O58287_PYRHO/54-108   AC O58287.1
#=GS Q5V0C4_HALMA/123-177  AC Q5V0C4.1
#=GS C6A2K1_THESM/46-100   AC C6A2K1.1
#=GS H3ZRC3_THELI/50-104   AC H3ZRC3.1
#=GS D3T0E6_NATMM/130-184  AC D3T0E6.1
#=GS B9LTG4_HALLT/107-161  AC B9LTG4.1
#=GS Q9HQY0_HALSA/90-144   AC Q9HQY0.1
#=GS B6YX59_THEON/49-103   AC B6YX59.1
#=GS G0HQV1_HALHT/118-172  AC G0HQV1.1
#=GS A4G0Q1_METM5/58-112   AC A4G0Q1.1
#=GS F7PIY2_9EURY/126-180  AC F7PIY2.1
#=GS B5IET3_ACIB4/62-130   AC B5IET3.1
#=GS B7R1K3_9EURY/50-104   AC B7R1K3.1
#=GS F8DA64_HALXS/50-104   AC F8DA64.1
#=GS D2RQA2_HALTV/103-157  AC D2RQA2.1
#=GS A6VHT3_METM7/58-112   AC A6VHT3.1
#=GS Q9HKP3_THEAC/49-103   AC Q9HKP3.1
#=GS FLAC_METVO/60-114     AC O06636.1
#=GS F7YWD2_9THEM/103-174  AC F7YWD2.1
#=GS F7XM56_METZD/92-146   AC F7XM56.1
#=GS F2KP74_ARCVS/75-129   AC F2KP74.1
#=GS Q9C4P8_METTL/56-110   AC Q9C4P8.1
#=GS D3S527_METSF/26-80    AC D3S527.1
#=GS G4IEI5_9EURY/79-133   AC G4IEI5.1
#=GS D3T0E2_NATMM/59-113   AC D3T0E2.1
#=GS Q9UYL5_PYRAB/51-105   AC Q9UYL5.1
#=GS A9A8Z5_METM6/58-112   AC A9A8Z5.1
#=GS Q97B51_THEVO/52-106   AC Q97B51.1
#=GS G0H3V0_METMI/58-112   AC G0H3V0.1
#=GS Q3IRS4_NATPD/81-135   AC Q3IRS4.1
#=GS F0LGX3_THEBM/54-108   AC F0LGX3.1
#=GS G0HJG2_THES4/58-112   AC G0HJG2.1
#=GS FLAC_METJA/10-64      AC Q58304.1
#=GS G4G460_9EURY/51-105   AC G4G460.1
#=GS C7P8Y9_METFA/32-86    AC C7P8Y9.1
#=GS D7DUZ0_METV3/60-114   AC D7DUZ0.1
#=GS A6UQV0_METVS/59-113   AC A6UQV0.1
#=GS F8AF89_PYRYC/16-70    AC F8AF89.1
#=GS C7NX06_HALMD/113-167  AC C7NX06.1
#=GS G4G465_9EURY/105-159  AC G4G465.1
#=GS E7QQ36_9EURY/69-123   AC E7QQ36.1
#=GS Q5JEE9_PYRKO/49-103   AC Q5JEE9.1
C7NUX6_HALUD/126-180             ..............RLDELETEVGSLSST...VNTVRNENEQISETVDDVEENV....RKLLDIYEMVTR...GVNP.F-a.........
F4HN90_PYRSN/51-105              ..............RLNDIENDLPRIKIS...IDNIKKQIQEIREEIERLDKTI....KDIMMLYEVVSQ...EINP.FK..........
F8DA60_HALXS/121-175             ..............RVEEIENNVGSLSST...VNTVQSENEKISDSLEEIEEDI....RKLLEVYEMVTQ...GVNP.FV..........
A8F7Y9_THELT/104-169             ..............KVDELEQKMNNLSTVpgeLATAEAQLSELSKSVEMLKQTVnihdKDVIKLYETVANlqkNYDAkFV..........
F7XQ58_METZD/108-162             ..............RINSLEKKLSKFEMS...FNMMERENKEIKETVTKIDQSV....IELLSLYEIVSN...QVNP.FV..........
E4NP52_HALBP/78-132              ..............RVSDLENEVSATSSS...VNTVREENKQIGETVEELDDTV....RKLLDIYEMVTR...GINP.FV..........
D4GWY6_HALVD/81-135              ..............RVGELENEVSAISSG...MNTVREENKQIGETVEELDDTI....RKLLDIYEMVTR...GINP.FV..........
C9REG2_METVM/24-78               ..............KVSDIESKLPRFESS...LNNLRKENEMLRIELNKINENL....QDIMALYEVVSN...QINP.FI..........
C5A727_THEGJ/50-104              ..............RINEIENDLPRIKIS...IDTIKKQIQELRDDIDRLDKTI....KDVMMLYEVISQ...EINP.FK..........
B0R4I5_HALS3/90-144              ..............RIEDLETEVSNVASK...ANTVRSENEQISESVEDVEENV....RKLLEIYEMVTR...GVNP.FV..........
D7E7V7_METEZ/87-141              ..............KIKTVESRMSKVDAN...ISTVQRENQELKKTIDKIDQSV....VELLSLYEIVSN...QVNP.FV..........
A6UTM8_META3/54-108              .............r-TGELESKIPRLEMT...ITSLKKENDELRDSIHKINENF....QDVMSLYEVVSN...QVNP.FI..........
Q6LWP0_METMP/58-112              ..............KIGELESKFPKIEMM...VTNLRKENENLRGDIQNINENF....QDMMALYEVVSN...QINP.FI..........
Q9C4R0_METMI/57-111              ..............KIGELESKFPKIEMM...VTNLRKENENLRGDIQNINENF....QDMMALYEVVSN...QINP.FI..........
Q8U3W5_PYRFU/49-103              ..............RINEIENDIPRIKIS...IDNIKKQIQELREEIERLDKTI....KDVMMLYEVVSQ...EINP.FK..........
B5IEG3_ACIB4/62-130              dideittklddisrKIDEFQAKIERHDSM...IGSLENEISEIRKVNEEMQDNI....KRLLDIYEVVSQ...KINP.FI..........
Q12VQ1_METBU/105-159             ..............KIKALENKLSKIDVA...ISSVQRENQDVKTTVEKIDQSV....LELLSLYEIVSN...QVNP.FV..........
D3RYP5_FERPA/47-101              ..............RLNEIENRLPRIDVS...ISNLKREIDGLKENIQKLEDSI....KDMMALYEVVSA...QINP.FV..........
O58287_PYRHO/54-108              ..............RLNDIENDLPRVKIS...IDNIKKQIQEIREEIERLDKTI....KDIMMLYEVVSQ...EINP.FK..........
Q5V0C4_HALMA/123-177             ..............RLDELENEVGSLSST...VNTVRTENESISESVEETEENV....RKLLDIYEMVTR...GVNP.F-a.........
C6A2K1_THESM/46-100              ..............RINEIENELPRIKVN...IDTLKSQIQELRDEIEKLDKTI....KDVMMLYEVVSQ...EINP.F-r.........
H3ZRC3_THELI/50-104              ..............RLSEVENEVPRIKIS...IDTLKKQFQEVREDIERLEKTI....KDIMMLYEVISQ...EINP.FK..........
D3T0E6_NATMM/130-184             ..............RVEEMENSVGSLSST...VNTVQSENEKIGESLDDIEENI....RKLLEVYEMVTQ...GVNP.FV..........
B9LTG4_HALLT/107-161             ..............RLDDLENEVSSLSST...VSTVRSENEEISAAVDDIEEDV....RNLLDIYEMVTR...GINP.FV..........
Q9HQY0_HALSA/90-144              ..............RIEDLETEVSNVASK...ANTVRSENEQISESVEDVEENV....RKLLEIYEMVTR...GVNP.FV..........
B6YX59_THEON/49-103              ..............RINEIENDIPRIKIS...IDTIKKQMQELRDDIDRLDKTI....KDVMMLYEVISQ...EINP.FK..........
G0HQV1_HALHT/118-172             ..............RLDELENEVGSLSST...VNTVRTENESISESVEETEENV....RKLLDIYEMVTR...GVNP.F-a.........
A4G0Q1_METM5/58-112              ..............KIGELESKFPKIEMM...VTNLRKENENLRSDIQSITENF....QDMMALYEVVSN...QINP.FI..........
F7PIY2_9EURY/126-180             ..............RLDELETEVGSLSST...VNTVRNENEQISETVDDVEENV....RKLLDIYEMVTR...GVNP.F-a.........
B5IET3_ACIB4/62-130              didelttklddisrKIDEFQAKIERHDSM...IGSLENEISEIRKVNEEMQDNI....KRLLDIYEVVSQ...KINP.FI..........
B7R1K3_9EURY/50-104              ..............RINEIENDLPRIKIS...IDTIKKQIQELRDDIDRLDKTI....KDVMMLYEVISQ...EINP.FK..........
F8DA64_HALXS/50-104              ..............RLDEIEKEIDSLEGK...VETVRGENEKISDSIQTVERNV....DRLVDMYEIVTQ...GINP.FV..........
D2RQA2_HALTV/103-157             ..............RIEELEEELQDKETE...LGSVQDSQQHVAEQVEEMNDRV....QRLLGVYDQVTD...DVNP.F-t.........
A6VHT3_METM7/58-112              ..............KIGELESKFPKIEMM...VTNLRKENENLRSDIQSINENF....QDMMALYEVVSN...QINP.FI..........
Q9HKP3_THEAC/49-103              ..............RMTKIENDLGKLSGE...MEGQKKTLNDIKNELEGIKENV....KMVVSLYELVSR...DFNP.FM..........
FLAC_METVO/60-114                ..............KMGELESKFPKIEMM...VTNLRKENENLRSDIHNINENF....QDMMALYEVVSN...QINP.FI..........
F7YWD2_9THEM/103-174             .......kvdalekKVAEIEAKIGAAETVt.eIAQLKAQILDLSKALEALKQTVnihdKDVIKLYEAIAN...----.--lqkglsavnd
F7XM56_METZD/92-146              ..............RINSLEKKLSKFEMS...FNMMERENKDIKDTVQKIDQSV....IELLSLYEIVSN...QVNP.FV..........
F2KP74_ARCVS/75-129              ..............RIKDLENEVGMISSK...LNTIKSENEEIGKRLEEIEENI....RKLLGIYEMVTE...GINP.F-a.........
Q9C4P8_METTL/56-110              ..............KISELESRFPKIEMM...VTNIRKENESLRNDINKINENF....QDIMALYEVVSN...QINP.FI..........
D3S527_METSF/26-80               ..............KVNDIESKLPKLESS...INNLRKENEMLRVELSKINENL....QDIMALYEVVSN...QINP.FI..........
G4IEI5_9EURY/79-133              ..............RIEELETEVSNVASK...ANTVRSENEQISESVEDVEENV....RKLLEIYEMVTR...GVNP.FV..........
D3T0E2_NATMM/59-113              ..............RLDEVEKEVDSLENK...VETVRGENEQISDSITSVERNV....DKLVDMYEIVTQ...GINP.FV..........
Q9UYL5_PYRAB/51-105              ..............RLNEIENDLPRVKIS...IDNIKKQIQEIREEIERLDKTI....KDIMMLYEVVSQ...EINP.FK..........
A9A8Z5_METM6/58-112              ..............KIGELESKFPKIEMM...VTNLRKENENLRSDIQSINENF....QDMMALYEVVSN...QINP.FI..........
Q97B51_THEVO/52-106              ..............RMTKIENNLGKMTAE...LEGQKKSLSDMKNELEGIKENV....KMVVSLYELVSR...DFNP.FM..........
G0H3V0_METMI/58-112              ..............KIGELESKFPKIEMM...VTNLRKENENLRGDIQNINENF....QDMMALYEVVSN...QINP.FI..........
Q3IRS4_NATPD/81-135              ..............RIDELENEVASLSST...VNTVKSENEQISESLEDVEENI....RKLLEVYEMVTR...GVNP.FV..........
F0LGX3_THEBM/54-108              ..............RINEIENDIPRIKVS...IDTLKSQIQEVQEEVEKLNKTI....KDVMMLYEVVSQ...EINP.FK..........
G0HJG2_THES4/58-112              ..............RVNEIENDIPRIKVS...IDTLKSQINELREEIERLDRVI....KDVMVLYEVVSQ...QINP.FK..........
FLAC_METJA/10-64                 ..............KVNDIESKLPKLESS...INNLRKENEMLRVELNKINENL....QDIMALYEVVSN...QINP.FI..........
G4G460_9EURY/51-105              ..............RLDEIEKEVDSLEGQ...IETVRSENEKISNSIDTVERNV....EKLVEMYEIVTQ...GVNP.FV..........
C7P8Y9_METFA/32-86               ..............KINDIESRLPRFESS...LNNLRKENEMLRIEINKINENL....QDIMALYEVVSN...QINP.FI..........
D7DUZ0_METV3/60-114              ..............KMGELESKFPKIEMM...VTNLRKENENLRSDIHNINENF....QDMMALYEVVSN...QINP.FI..........
A6UQV0_METVS/59-113              ..............KIGELESKFPKIEMM...VTNLRKENENLRSDIQNINENF....QDMMALYEVVSN...QINP.FI..........
F8AF89_PYRYC/16-70               ..............RLNEIENDLPRVKIS...IDNIKKQMQELREEIERLDKTI....KDIMMLYEVVSQ...EINP.FK..........
C7NX06_HALMD/113-167             ..............RLDELENEVGSLSST...VNTVRTENEQISESVEEVEENV....RKLLDIYEMVTR...GVNP.F-a.........
G4G465_9EURY/105-159             ..............RIDEMENDVGSLSST...VNTVQSENEKISDSLEEIEEDI....RKLLEVYEMVTQ...GVNP.FV..........
E7QQ36_9EURY/69-123              ..............RLQDLENEVGDIAST...VSTVRSENEQISEKVDDVEENV....RKLLEIYEMVTR...GVNP.FV..........
Q5JEE9_PYRKO/49-103              ..............RVNEIENDLPRIKIG...IDTLKKQMQELRDEIDRLDKTI....KDVMMLYEVISQ...EINP.FK..........
#=GC seq_cons                    ..............RlsElEscls+lcss...lssl+pENcpl+csl-cl--sl....+clhsLYElVSp...pINP.Fl..........
//
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