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Database: Pfam
Entry: FlaC_arch
LinkDB: FlaC_arch
Original site: FlaC_arch 
#=GF ID   FlaC_arch
#=GF AC   PF05377.9
#=GF DE   Flagella accessory protein C (FlaC)
#=GF AU   Studholme DJ
#=GF SE   Manual
#=GF GA   27.80 27.80;
#=GF TC   27.80 37.20;
#=GF NC   27.70 27.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   11250034
#=GF RT   The archaeal flagellum: a different kind of prokaryotic motility
#=GF RT   structure. 
#=GF RA   Thomas NA, Bardy SL, Jarrell KF; 
#=GF RL   FEMS Microbiol Rev 2001;25:147-174.
#=GF RN   [2]
#=GF RM   11717274
#=GF RT   Characterization of flagellum gene families of methanogenic
#=GF RT   archaea and localization of novel flagellum accessory proteins. 
#=GF RA   Thomas NA, Jarrell KF; 
#=GF RL   J Bacteriol 2001;183:7154-7164.
#=GF DR   INTERPRO; IPR009205;
#=GF CC   Although archaeal flagella appear superficially similar to those
#=GF CC   of bacteria, they are quite distinct[1]. In several archaea, the
#=GF CC   flagellin genes are followed immediately by the flagellar
#=GF CC   accessory genes flaCDEFGHIJ.  The gene products may have a role
#=GF CC   in translocation, secretion, or assembly of the flagellum. FlaC
#=GF CC   is a protein whose exact role is unknown but it has been shown
#=GF CC   to be membrane-associated (by immuno-blotting fractionated
#=GF CC   cells) [2].
#=GF SQ   48
#=GS F8DA60_HALXS/121-175      AC F8DA60.1
#=GS A8F7Y9_PSELT/104-169      AC A8F7Y9.1
#=GS F7XQ58_METZD/108-162      AC F7XQ58.1
#=GS E4NP52_HALBP/78-132       AC E4NP52.1
#=GS D4GWY6_HALVD/81-135       AC D4GWY6.1
#=GS C5A727_THEGJ/50-104       AC C5A727.1
#=GS D7E7V7_METEZ/87-141       AC D7E7V7.1
#=GS T0N1E1_9EURY/59-113       AC T0N1E1.1
#=GS A6UTM8_META3/54-108       AC A6UTM8.1
#=GS L0AJB7_NATGS/51-105       AC L0AJB7.1
#=GS Q6LWP0_METMP/58-112       AC Q6LWP0.1
#=GS M1XL96_NATM8/79-133       AC M1XL96.1
#=GS R4W885_9EURY/120-174      AC R4W885.1
#=GS Q8U3W5_PYRFU/49-103       AC Q8U3W5.1
#=GS A0A0F7IDQ0_9EURY/52-106   AC A0A0F7IDQ0.1
#=GS Q12VQ1_METBU/105-159      AC Q12VQ1.1
#=GS D3RYP5_FERPA/47-101       AC D3RYP5.1
#=GS Q5V0C4_HALMA/123-177      AC Q5V0C4.1
#=GS D3T0E6_NATMM/130-184      AC D3T0E6.1
#=GS B9LTG4_HALLT/107-161      AC B9LTG4.1
#=GS H3ZRC3_THELN/50-104       AC H3ZRC3.1
#=GS W0JTT1_9EURY/54-108       AC W0JTT1.1
#=GS L0K1W4_9EURY/140-194      AC L0K1W4.1
#=GS Q9HQY0_HALSA/90-144       AC Q9HQY0.1
#=GS F7PIY2_9EURY/126-180      AC F7PIY2.1
#=GS F8DA64_HALXS/50-104       AC F8DA64.1
#=GS K4MF48_9EURY/113-167      AC K4MF48.1
#=GS L0I8R3_HALRX/126-180      AC L0I8R3.1
#=GS W0JYM1_9EURY/79-133       AC W0JYM1.1
#=GS D2RQA2_HALTV/103-157      AC D2RQA2.1
#=GS B5IET3_ACIB4/76-130       AC B5IET3.1
#=GS Q9HKP3_THEAC/49-103       AC Q9HKP3.1
#=GS F7XM56_METZD/92-146       AC F7XM56.1
#=GS T0M5T8_9EURY/51-105       AC T0M5T8.1
#=GS F2KP74_ARCVS/75-129       AC F2KP74.1
#=GS D3T0E2_NATMM/59-113       AC D3T0E2.1
#=GS Q9UYL5_PYRAB/51-105       AC Q9UYL5.1
#=GS W0JPA3_9EURY/117-171      AC W0JPA3.1
#=GS Q3IRS4_NATPD/81-135       AC Q3IRS4.1
#=GS F0LGX3_THEBM/54-108       AC F0LGX3.1
#=GS L0AJC3_NATGS/105-159      AC L0AJC3.1
#=GS FLAC_METJA/10-64          AC Q58304.1
#=GS L0KVM6_METHD/107-161      AC L0KVM6.1
#=GS F7YWD2_9THEM/103-168      AC F7YWD2.1
#=GS A0A0E3X2B2_METMT/106-160  AC A0A0E3X2B2.1
#=GS D7DUZ0_METV3/60-114       AC D7DUZ0.1
#=GS C7NX06_HALMD/113-167      AC C7NX06.1
#=GS Q5JEE9_THEKO/49-103       AC Q5JEE9.1
F8DA60_HALXS/121-175                 .......RVEEIENNVGSLSS...TVNTVQSENEKISDSLEEIEEDI....RKLLEVYEMVTQ.GVN...PFV..
A8F7Y9_PSELT/104-169                 .......KVDELEQKMNNLSTvpgELATAEAQLSELSKSVEMLKQTVnihdKDVIKLYETVANlQKNydaKFV..
F7XQ58_METZD/108-162                 .......RINSLEKKLSKFEM...SFNMMERENKEIKETVTKIDQSV....IELLSLYEIVSN.QVN...PFV..
E4NP52_HALBP/78-132                  .......RVSDLENEVSATSS...SVNTVREENKQIGETVEELDDTV....RKLLDIYEMVTR.GIN...PFV..
D4GWY6_HALVD/81-135                  .......RVGELENEVSAISS...GMNTVREENKQIGETVEELDDTI....RKLLDIYEMVTR.GIN...PFV..
C5A727_THEGJ/50-104                  .......RINEIENDLPRIKI...SIDTIKKQIQELRDDIDRLDKTI....KDVMMLYEVISQ.EIN...PF-k.
D7E7V7_METEZ/87-141                  .......KIKTVESRMSKVDA...NISTVQRENQELKKTIDKIDQSV....VELLSLYEIVSN.QVN...PFV..
T0N1E1_9EURY/59-113                  .......RMGNMENEVGKMST...LLESLKRGFQESGDKLTMISENV....KMVVSLYEVVSK.DFN...PF-l.
A6UTM8_META3/54-108                  .......RTGELESKIPRLEM...TITSLKKENDELRDSIHKINENF....QDVMSLYEVVSN.QVN...PFI..
L0AJB7_NATGS/51-105                  .......RLDEIEKEVDSLEG...QIETVRSENEKISNSIDTVERNV....EKLVEMYEIVTQ.GVN...PFV..
Q6LWP0_METMP/58-112                  .......KIGELESKFPKIEM...MVTNLRKENENLRGDIQNINENF....QDMMALYEVVSN.QIN...PFI..
M1XL96_NATM8/79-133                  .......RIDELENEVASLSS...TVNTVKSENEQISESVGEVEENV....RKLLEVYEMVTR.GVN...PFV..
R4W885_9EURY/120-174                 .......RVDEIEDELSSISS...TVSTVRTENEQISESVDDIEENV....RKLLDIYKMVTK.GVN...PFV..
Q8U3W5_PYRFU/49-103                  .......RINEIENDIPRIKI...SIDNIKKQIQELREEIERLDKTI....KDVMMLYEVVSQ.EIN...PF-k.
A0A0F7IDQ0_9EURY/52-106              .......RLSDIENRLPRMDI...SMSNLKKEIDGLRDEMKKIEESM....KDMMALYEVVSA.QIN...PFV..
Q12VQ1_METBU/105-159                 .......KIKALENKLSKIDV...AISSVQRENQDVKTTVEKIDQSV....LELLSLYEIVSN.QVN...PFV..
D3RYP5_FERPA/47-101                  .......RLNEIENRLPRIDV...SISNLKREIDGLKENIQKLEDSI....KDMMALYEVVSA.QIN...PFV..
Q5V0C4_HALMA/123-177                 .......RLDELENEVGSLSS...TVNTVRTENESISESVEETEENV....RKLLDIYEMVTR.GVN...PF-a.
D3T0E6_NATMM/130-184                 .......RVEEMENSVGSLSS...TVNTVQSENEKIGESLDDIEENI....RKLLEVYEMVTQ.GVN...PFV..
B9LTG4_HALLT/107-161                 .......RLDDLENEVSSLSS...TVSTVRSENEEISAAVDDIEEDV....RNLLDIYEMVTR.GIN...PFV..
H3ZRC3_THELN/50-104                  .......RLSEVENEVPRIKI...SIDTLKKQFQEVREDIERLEKTI....KDIMMLYEVISQ.EIN...PF-k.
W0JTT1_9EURY/54-108                  ......q-LDEIEKEVESLEN...KVETVRGENEKISDSISTVERNV....DKLVDLYEIVTE.GVN...PF-a.
L0K1W4_9EURY/140-194                 .......RTESLEESIEDTEM...RLDAIQDSQEQVVSQVDELNDRV....RRLLGLYDQVTD.DIN...PF-t.
Q9HQY0_HALSA/90-144                  .......RIEDLETEVSNVAS...KANTVRSENEQISESVEDVEENV....RKLLEIYEMVTR.GVN...PFV..
F7PIY2_9EURY/126-180                 .......RLDELETEVGSLSS...TVNTVRNENEQISETVDDVEENV....RKLLDIYEMVTR.GVN...PF-a.
F8DA64_HALXS/50-104                  .......RLDEIEKEIDSLEG...KVETVRGENEKISDSIQTVERNV....DRLVDMYEIVTQ.GIN...PFV..
K4MF48_9EURY/113-167                 .......KIKDVETKLSKADV...TLSMVQRDNEEIKKTVDKIDQSV....LELLSLYEIVSN.QVN...PFV..
L0I8R3_HALRX/126-180                 .......RIETLEEELERNGT...RLGSIRDAQESVSDDIEEVNDTV....RRLLGVYDRLTE.QVN...PF-t.
W0JYM1_9EURY/79-133                  .......RIEELETEVSNVAS...KANTVRSENEQISESVEDVEENV....RKLLEIYEMVTR.GVN...PFV..
D2RQA2_HALTV/103-157                 .......RIEELEEELQDKET...ELGSVQDSQQHVAEQVEEMNDRV....QRLLGVYDQVTD.DVN...PF-t.
B5IET3_ACIB4/76-130                  .......KIDEFQAKIERHDS...MIGSLENEISEIRKVNEEMQDNI....KRLLDIYEVVSQ.KIN...PFI..
Q9HKP3_THEAC/49-103                  .......RMTKIENDLGKLSG...EMEGQKKTLNDIKNELEGIKENV....KMVVSLYELVSR.DFN...PFM..
F7XM56_METZD/92-146                  .......RINSLEKKLSKFEM...SFNMMERENKDIKDTVQKIDQSV....IELLSLYEIVSN.QVN...PFV..
T0M5T8_9EURY/51-105                  .......RIGNVENELSKLGV...SMDGVKRNISEMNTELETLKENV....KMVVSLYEMVSK.KFN...PFM..
F2KP74_ARCVS/75-129                  .......RIKDLENEVGMISS...KLNTIKSENEEIGKRLEEIEENI....RKLLGIYEMVTE.GIN...PF-a.
D3T0E2_NATMM/59-113                  .......RLDEVEKEVDSLEN...KVETVRGENEQISDSITSVERNV....DKLVDMYEIVTQ.GIN...PFV..
Q9UYL5_PYRAB/51-105                  .......RLNEIENDLPRVKI...SIDNIKKQIQEIREEIERLDKTI....KDIMMLYEVVSQ.EIN...PF-k.
W0JPA3_9EURY/117-171                 .......RVEEMENDVGSLSS...TVNTVQSENEKISESLEDIEENI....RKLLEVYEMVTQ.GVN...PFV..
Q3IRS4_NATPD/81-135                  .......RIDELENEVASLSS...TVNTVKSENEQISESLEDVEENI....RKLLEVYEMVTR.GVN...PFV..
F0LGX3_THEBM/54-108                  .......RINEIENDIPRIKV...SIDTLKSQIQEVQEEVEKLNKTI....KDVMMLYEVVSQ.EIN...PF-k.
L0AJC3_NATGS/105-159                 .......RIDEMENDVGSLSS...TVNTVQSENEKISDSLEEIEEDI....RKLLEVYEMVTQ.GVN...PFV..
FLAC_METJA/10-64                     .......KVNDIESKLPKLES...SINNLRKENEMLRVELNKINENL....QDIMALYEVVSN.QIN...PFI..
L0KVM6_METHD/107-161                 .......KIKEIEGKIAKSEV...SLSMLQKENEEVGKTVAKMDKNI....LELLSLYEIVSN.QVN...PFV..
F7YWD2_9THEM/103-168                 kvdalekKVAEIEAKIGAAETv.tEIAQLKAQILDLSKALEALKQTVnihdKDVIKLYEAIANlQ--...---kg
A0A0E3X2B2_METMT/106-160             .......KIKALETKLSKVDT...AISTVQRESQSVKTTVEKIDQSV....LELLSLYELVSN.QVN...PFV..
D7DUZ0_METV3/60-114                  .......KMGELESKFPKIEM...MVTNLRKENENLRSDIHNINENF....QDMMALYEVVSN.QIN...PFI..
C7NX06_HALMD/113-167                 .......RLDELENEVGSLSS...TVNTVRTENEQISESVEEVEENV....RKLLDIYEMVTR.GVN...PF-a.
Q5JEE9_THEKO/49-103                  .......RVNEIENDLPRIKI...GIDTLKKQMQELRDEIDRLDKTI....KDVMMLYEVISQ.EIN...PF-k.
#=GC seq_cons                        .......RlsElEs-lsplps...slsol+pENcclp-sl-cl--sl....+cLlslYEhVop.tlN...PFl..
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