GenomeNet

Database: Pfam
Entry: Flavi_DEAD
LinkDB: Flavi_DEAD
Original site: Flavi_DEAD 
#=GF ID   Flavi_DEAD
#=GF AC   PF07652.12
#=GF DE   Flavivirus DEAD domain 
#=GF AU   Finn RD
#=GF SE   Pfam-B_199 (release 3.0)
#=GF GA   20.70 20.70;
#=GF TC   20.70 20.70;
#=GF NC   20.60 20.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF DR   INTERPRO; IPR011492;
#=GF SQ   11
#=GS A0A059LHH8_9CHLO/287-428  AC A0A059LHH8.1
#=GS W5X1V6_BDEBC/18-161       AC W5X1V6.1
#=GS POLG_HCVH/1280-1362       AC P27958.3
#=GS POLG_HCVH/1280-1362       DR PDB; 1A1V A; 254-336;
#=GS POLG_HCVH/1280-1362       DR PDB; 1JR6 A; 1-10;
#=GS POLG_HCVH/1280-1362       DR PDB; 1HEI A; 254-336;
#=GS POLG_HCVH/1280-1362       DR PDB; 1ONB A; 1-10;
#=GS POLG_HCVH/1280-1362       DR PDB; 1HEI B; 262-336;
#=GS POLG_DEN1W/1659-1806      AC P17763.2
#=GS POLG_DEN1W/1659-1806      DR PDB; 4LCY J; 1-9;
#=GS POLG_BVDVN/1895-2043      AC P19711.2
#=GS J9D5Y3_EDHAE/21-162       AC J9D5Y3.1
#=GS O41892_PEGIA/1159-1296    AC O41892.1
#=GS U6PZY9_HAECO/191-305      AC U6PZY9.1
#=GS K0CDN4_ALCDB/25-167       AC K0CDN4.1
#=GS POLG_YEFV1/1672-1819      AC P03314.1
#=GS POLG_YEFV1/1672-1819      DR PDB; 1YKS A; 188-335;
#=GS POLG_YEFV1/1672-1819      DR PDB; 5FFM A; 188-335;
#=GS A0A0J8B0V1_BETVU/12-127   AC A0A0J8B0V1.1
A0A059LHH8_9CHLO/287-428             .....................................................v-RENQIVVVVGE..TGSGKTTQM..TQYL.........V..ES..G..L.A...R..R..GCVA.C..T..Q.P....RRV........A.......A.......M....S....V....A....A...RV..aE.......E...M....G......VEL.....G.....R........E...VgysirF...E...D...VTSEDTIIK..Y....MT.D.GVL..LRETMV..DA.....EL.DRYAAVIMDEAH....-..----.....-.....-.-..----.---.-....-.-.-.-.-..-.-.-.-------------------erslntdvlfgvlrrvvarrrdfrlvvtsat........
W5X1V6_BDEBC/18-161                  ....................................................la--KSPNIVLTAA..PGAGKTTRL..PPFL.........L..KH..C..Q.K...-..-..-KVV.V..L..E.P....RRM........A.......AvaathriA....E....E....N....N...WQ...V.......G...N....E......VGY.....T.....V........R...F.....A...N...E...SSAETRLI-..F....MT.E.ALF..ARKLLE..DS.....EL.SDIDIIVLDEFH....E..RSLT.....V.....D.I..CLGL.IRE.L....Q.E.L.G.H.pV.K.L.VVMSAT-------------lnaak..................................
POLG_HCVH/1280-1362                  .........................................tgvrtittgspit------------..---------..----.........-..--..-..-.-...-..-..----.-..-..-.-....---........-.......-.......-....-....-....-....-...--...-.......-...-....-......---.....-.....-........-...-.....-...-...-...---------..-....--.Y.STY..GKFLAD.aGC.....SG.GAYDIIICDECH....S..TDAT.....S.....I.S..GIGT.VLD.Q....A.E.T.A.G..A.RlV.VLATATPPGSV--------tvshpni................................
#=GR POLG_HCVH/1280-1362       SS    .........................................ETTEEEXX--SEE------------..---------..----.........-..--..-..-.-...-..-..----.-..-..-.-....---........-.......-.......-....-....-....-....-...--...-.......-...-....-......---.....-.....-........-...-.....-...-...-...---------..-....--.E.EEH..HHHHHT.TSC.....GS.SS-SEEEEETTT....-..-SHH.....H.....H.H..HHHH.HHH.H....T.T.T.T.T..-.SEE.EEEESS-TT----------S---TTE................................
POLG_DEN1W/1659-1806                 ......................................................FRKRNLTIMDLH..PGSGKTRRY..LPAI.........V..RE..A..I.R...R..N..VRTL.V..L..A.P....TRV........V.......A.......S....E....M....A....E...AL...K.......G...M....P......IRY.....Q.....T........T...A.....V...K...S...EHTGKEIVD..L....MC.H.ATF..TMRLLS..PV.....RV.PNYNMIIMDEAH....F..TDPA.....S.....I.A..ARGY.IST.R....V.G.M.G.E..A.A.A.IFMTATPPGSVEAFPQSNA.......................................
#=GR POLG_DEN1W/1659-1806      SS    ......................................................XXXXXXXXXXXX..XXXXXXXXX..XXXX.........X..XX..X..X.X...X..X..XXXX.X..X..X.X....XXX........X.......X.......X....X....X....X....X...XX...X.......X...X....X......XXX.....X.....X........X...X.....X...X...X...XXXXXXXXX..X....XX.X.XX-..---S--..--.....XX.XXXXXXXXXXXX....X..XXXX.....X.....X.X..XXXX.XXX.X....X.X.X.X.X..X.X.X.XXXXXXXXXXXXXXXXXXX.......................................
POLG_BVDVN/1895-2043                 ....................................................mn--RGDFKQITLA..TGAGKTTE-..LPKA.........V..IE..E..I.G...R..H..KRVL.V..L..I.P....LRA........A.......A.......E....S....V....Y....Q...YM...R.......L...K....H......PSI.....S.....F........N...L.....R...I...G...DMKEGDMAT..G....IT.Y.ASY..GYFCQM..PQpklraAM.VEYSYIFLDEYH....C..ATPE.....Q.....L.A..IIGK.IHR.F....S.E.S.I.-..-.R.V.VAMTATPAGSVT-------ttgqkh.................................
J9D5Y3_EDHAE/21-162                  .....................................................v-KKSPVTIIKGP..TGCGKS-TF..VPKL.........I..YD..S..T.E...K..Q..TRIA.L..I..Q.P....RRI........A.......V.......L....G....L....Y....K...TI...Ssyi.kycG...Y....K......MRF.....D.....H........K...M.....V...-...P...KGHRNKFIR..V....LT.D.GML..INEILN..Q-.....-N.IYYDYIIIDEVH....E..RSIR.....T.....D.I..ILGI.IKN.I....Q.K.K.T.K..F.K.L.ILMSAT-------------idtsi..................................
O41892_PEGIA/1159-1296               .................................................lylpt------------..-GSGKSTRI..PA--.........-..-E..Y..A.K...A..G..HKVL.V..L..N.P....SIA........T.......V.......R....A....M....G....P...YM...E.......K...L....T......GQH.....P.....S........V...Y.....C...G...Hd.tTAYSRTTQS..N....LT.Y.CTY..GRFMAN..PR.....KYlRGHDVVICDECH....S..TDGV.....S.....V.L..GMGR.ARL.L....A.K.E.C.R..V.R.LlLFATATPPGA---------pmaahdn................................
U6PZY9_HAECO/191-305                 ...................................................vss----HVTYVLAH..SGAGKTRKV..AVNM.........A..RE..A..L.K...E..K..KKVL.I..T..V.P....TNV........I.......A.......T....Q....L....M....E...VL...Y.......E...N....K......VYA.....R.....S........L...T.....F...E...ArpvHRRVGALVA..V....IT.H.GHL..THRLIN.ePR.....YL.DRYGIVVVDEAH....V..----.....-.....-.-..----.---.-....-.-.-.-.-..-.-.-.-------------------kqfetm.................................
K0CDN4_ALCDB/25-167                  ................................................lrqhgg------AVLEAP..PGAGKSTRV..PLAL.........L..DA..D..W.R...Q..E..RRIL.M..L..E.P....RRV........A.......A.......R....S....V....A....Ty.mAL...Qlg..epvG...Q....R......IGY.....R.....T........R...L.....D...-...S...RAGKDTVIE..V....VT.E.GVL..TRMLHE..DP.....AL.ERYAAVLFDEFH....-..----.....-.....-.-..----.---.-....-.-.-.-.-..-.-.-.-------------------erslqadlglalvqevrqalredlrllvmsat.......
POLG_YEFV1/1672-1819                 .....................................................l-KKGMTTVLDFH..PGAGKTRRF..LPQI.........L..AE..C..A.R...R..R..LRTL.V..L..A.P....TRV........V.......L.......S....E....M....K....E...AF...H.......G...L....D......VKF.....H.....T........Q...A.....F...S...A...HGSGREVID..A....MC.H.ATL..TYRMLE..PT.....RV.VNWEVIIMDEAH....F..LDPA.....S.....I.A..ARGW.AAH.R....A.R.A.N.E..S.A.T.ILMTATPPGTSDEFPHSN-g......................................
#=GR POLG_YEFV1/1672-1819      SS    .....................................................T-STT-EEEE---..TTSSTTTTH..HHHH.........H..HH..H..H.H...C..T..--EE.E..E..E.S....SHH........H.......H.......H....H....H....H....H...HT...T.......T...S....-......EEE.....-.....S........S...-.....-...-...-...---SS--EE..E....EE.H.HHH..HHHHTS..SS.....--.---SEEEECTTT....-..-SHH.....H.....H.H..HHHH.HHH.H....H.H.T.T.S..-.E.E.EEE-SS-TT---SS---S-S......................................
A0A0J8B0V1_BETVU/12-127              ............................................ivgctqprrv------------..---------..----.........-..--..-..-.-...-..-..---A.A..M..S.V....AKR........V.......S.......E....E....M....E....T...DL...G.......D...-....K......VGY.....A.....I........R...F.....E...-...D...VTGPNTIIK..Y....MT.D.GVL..LRETLK..DA.....EL.EKYRVIVMDEAH....E..RSLS.....T.....D.V..LFGI.LKK.V....V.ArR.R.D..F.K.L.IVTSAT-------------lnaqkfsd...............................
#=GC SS_cons                         .........................................ETTEEE....SEC-STT-EEEE---..TTSSTTTTH..HHHH.........H..HH..H..H.H...C..T..--EE.E..E..E.S....SHH........H.......H.......H....H....H....H....H...HT...T.......T...S....-......EEE.....-.....S........S...-.....-...-...-...---SS--EE..E....EE.C.CCH..HHHHCT.TSC.....GS.SS-SEEEECTTT....-..-SHH.....H.....H.H..HHHH.HHH.H....C.C.T.T.T..-.CEE.EEEESS-TT---SS---S-S...TTE................................
#=GC seq_cons                        .....................................................s......hhl.h...sGuGKopch...s.h.........l...c..s..h.c...p..p..h+ll.l..l..t.P....pRs........s.......u.......p....p....h....t....p...hh...p.......t........c......lta.....p.....p........p...h.....h.......s...psttspllp..h....hT.c.ush..s+chhp..ss.....pl.spYshIlhDEsH.......ts.t.....s.......h..hhGh.htp.h......t...t.t....t.h.lhhoAT.............hputp..................................
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