GenomeNet

Database: Pfam
Entry: Flavi_DEAD
LinkDB: Flavi_DEAD
Original site: Flavi_DEAD 
#=GF ID   Flavi_DEAD
#=GF AC   PF07652.11
#=GF DE   Flavivirus DEAD domain 
#=GF AU   Finn RD
#=GF SE   Pfam-B_199 (release 3.0)
#=GF GA   20.70 20.70;
#=GF TC   20.70 20.70;
#=GF NC   20.60 20.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF DR   INTERPRO; IPR011492;
#=GF SQ   10
#=GS B3MNP1_DROAN/45-163     AC B3MNP1.1
#=GS W5X1V6_BDEBC/18-161     AC W5X1V6.1
#=GS POLG_HCVH/1280-1362     AC P27958.3
#=GS POLG_DEN1W/1659-1806    AC P17763.2
#=GS POLG_BVDVN/1895-2043    AC P19711.2
#=GS O41892_PEGIA/1159-1296  AC O41892.1
#=GS K0CDN4_ALCDB/25-167     AC K0CDN4.1
#=GS POLG_YEFV1/1672-1819    AC P03314.1
#=GS POLG_YEFV1/1672-1819    DR PDB; 1YMF A; 188-335;
#=GS POLG_YEFV1/1672-1819    DR PDB; 1YKS A; 188-335;
#=GS Q8SR50_ENCCU/195-345    AC Q8SR50.1
#=GS A7IH80_XANP2/30-179     AC A7IH80.1
B3MNP1_DROAN/45-163                .....................................................v-REHQVLIIEGE..TGSGKTTQV..PQYL.........VEA..G..F.T...K..D..KKMIgC..TQ.P....RRV........A.......A.......M....S.V....A....A..RV..aE.......E...M....G......VKL.....G.....N........E...VgysirF...E...D..CTSDRTILKYMT.D.GTLH...REFLS..EP.....DL.ASYSVMIIDEAH....-..----.....-.....-.-..----.----..-.-.-.-.-.-.-.-.-------------------ertlhtd................................
W5X1V6_BDEBC/18-161                ....................................................la--KSPNIVLTAA..PGAGKTTRL..PPFL.........LKH..C..Q.K...-..-..-KVV.V..LE.P....RRM........A.......AvaathriA....E.E....N....N..WQ...V.......G...N....E......VGY.....T.....V........R...F.....A...N...E..SSAETRLI-FMT.E.ALFA...RKLLE..DS.....EL.SDIDIIVLDEFH....E..RSLT.....V.....D.I..CLGL.IREL..Q.E.L.G.HpV.K.L.VVMSAT-------------lnaak..................................
POLG_HCVH/1280-1362                .........................................tgvrtittgspit------------..---------..----.........---..-..-.-...-..-..----.-..--.-....---........-.......-.......-....-.-....-....-..--...-.......-...-....-......---.....-.....-........-...-.....-...-...-..------------.Y.STYG...KFLAD.aGC.....SG.GAYDIIICDECH....S..TDAT.....S.....I.S..GIGT.VLDQ..A.E.T.A.G.A.RlV.VLATATPPGSV--------tvshpni................................
POLG_DEN1W/1659-1806               ......................................................FRKRNLTIMDLH..PGSGKTRRY..LPAI.........VRE..A..I.R...R..N..VRTL.V..LA.P....TRV........V.......A.......S....E.M....A....E..AL...K.......G...M....P......IRY.....Q.....T........T...A.....V...K...S..EHTGKEIVDLMC.H.ATFT...MRLLS..PV.....RV.PNYNMIIMDEAH....F..TDPA.....S.....I.A..ARGY.ISTR..V.G.M.G.E.A.A.A.IFMTATPPGSVEAFPQSNA.......................................
POLG_BVDVN/1895-2043               ....................................................mn--RGDFKQITLA..TGAGKTTE-..LPKA.........VIE..E..I.G...R..H..KRVL.V..LI.P....LRA........A.......A.......E....S.V....Y....Q..YM...R.......L...K....H......PSI.....S.....F........N...L.....R...I...G..DMKEGDMATGIT.Y.ASYG...YFCQM..PQpklraAM.VEYSYIFLDEYH....C..ATPE.....Q.....L.A..IIGK.IHRF..S.E.S.I.-.-.R.V.VAMTATPAGSVT-------ttgqkh.................................
O41892_PEGIA/1159-1296             .................................................lylpt------------..-GSGKSTRI..PA--.........--E..Y..A.K...A..G..HKVL.V..LN.P....SIA........T.......V.......R....A.M....G....P..YM...E.......K...L....T......GQH.....P.....S........V...Y.....C...G...HdtTAYSRTTQSNLT.Y.CTYG...RFMAN..PR.....KYlRGHDVVICDECH....S..TDGV.....S.....V.L..GMGR.ARLL..A.K.E.C.R.V.R.LlLFATATPPGA---------pmaahdn................................
K0CDN4_ALCDB/25-167                ................................................lrqhgg------AVLEAP..PGAGKSTRV..PLAL.........LDA..D..W.R...Q..E..RRIL.M..LE.P....RRV........A.......A.......R....S.V....A....TymAL...Qlg..epvG...Q....R......IGY.....R.....T........R...L.....D...-...S..RAGKDTVIEVVT.E.GVLT...RMLHE..DP.....AL.ERYAAVLFDEFH....-..----.....-.....-.-..----.----..-.-.-.-.-.-.-.-.-------------------erslqadlglalvqevrqalredlrllvmsat.......
POLG_YEFV1/1672-1819               .....................................................l-KKGMTTVLDFH..PGAGKTRRF..LPQI.........LAE..C..A.R...R..R..LRTL.V..LA.P....TRV........V.......L.......S....E.M....K....E..AF...H.......G...L....D......VKF.....H.....T........Q...A.....F...S...A..HGSGREVIDAMC.H.ATLT...YRMLE..PT.....RV.VNWEVIIMDEAH....F..LDPA.....S.....I.A..ARGW.AAHR..A.R.A.N.E.S.A.T.ILMTATPPGTSDEFPHSN-g......................................
#=GR POLG_YEFV1/1672-1819    SS    .....................................................T-S-EEE-SS---..--SS--EEE..HHHH.........---..E..E.T...-..H..HHHH.H..HH.T....EEE........-.......S.......X....X.X....X....X..XX...X.......X...X....X......XXX.....X.....X........X...X.....X...X...X..XXXXXXXXXXXX.X.XXXX...XXXXX..XX.....XX.XXXXXXXXXXXX....X..XXXX.....X.....X.X..XXXX.XXXX..X.X.X.X.X.X.X.X.XXXXXXXXXXXXXXXXXX-X......................................
Q8SR50_ENCCU/195-345               ...................................................vrt---SAVVFVTGA..PGCGKTTQI..-PQF.........LYE.gG..L.A...A..G..KMIG.V..TQ.P....RRIsatsissrI.......N.......E....E.M....N....E..NL...C.......G...Y....K......IKY.....E.....S........T...V.....T...-...-..---SETRIKVMT.D.GVLI...KEIQD..DF.....LL.SRYSVIIVDEVH....E..RNTNidlliS.....I.I..PRIM.KVRR..A.R.G.D.D.L.K.L.VLMSAT--GDAD-------efka...................................
A7IH80_XANP2/30-179                ..................................................lata----TCAVLVAP..PGAGKTTRV..PLAL.........LDA..P..W.V...K..G..GRIL.V..LE.P....RRL........Aar...aaA.......R....R.M....A....Q..SL...Ge....rvG...E....R......VGY.....R.....T........R...L.....A...-...S..EVSGRTRIEVIT.E.GIFT...RMVLE..DP.....EL.SGVAAVLFDEFH....-..----.....-.....-.-..----.----..-.-.-.-.-.-.-.-.-------------------ersldadlglalaldaqrglredlrlvamsatldgarva
#=GC SS_cons                       .....................................................T-S-EEE-SS---..--SS--EEE..HHHH.........---..E..E.T...-..H..HHHH.H..HH.T....EEE........-.......S.......X....X.X....X....X..XX...X.......X...X....X......XXX.....X.....X........X...X.....X...X...X..XXXXXXXXXXXX.X.XXXX...XXXXX..XX.....XX.XXXXXXXXXXXX....X..XXXX.....X.....X.X..XXXX.XXXX..X.X.X.X.X.X.X.X.XXXXXXXXXXXXXXXXXX-X......................................
#=GC seq_cons                      ....................................................hs...t.hhllsht..PGuGKTTRl...stl.........ltc..s..h.p...p..t..t+lL.V..Lp.P....pRl........s.......A.......p....p.h....s....p..th...p.......G...h....c......lpa.....p.....o........p...h.....s.......s..pssscshlcshT.c.uoas...+hlh-..ss.....cl.ssYslIIhDEsH.......tsss.....s.....l.h..shGh.hhph..s.c...s.t...t.h.lhhoAT..Gs.........phuhpt.................................
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