GenomeNet

Database: Pfam
Entry: GBP_repeat
LinkDB: GBP_repeat
Original site: GBP_repeat 
#=GF ID   GBP_repeat
#=GF AC   PF02526.12
#=GF DE   Glycophorin-binding protein
#=GF AU   Bashton M, Bateman A
#=GF SE   Pfam-B_1047 (release 5.4)
#=GF GA   25.00 25.00;
#=GF TC   44.70 43.60;
#=GF NC   22.40 15.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Repeat
#=GF RN   [1]
#=GF RM   7891744
#=GF RT   Isolation of a third member of the Plasmodium falciparum
#=GF RT   glycophorin-binding protein gene family. 
#=GF RA   Rudolph B, Nolte D, Knapp B; 
#=GF RL   Mol Biochem Parasitol 1994;68:173-176.
#=GF RN   [2]
#=GF RM   3512098
#=GF RT   A tandemly repeated sequence determines the binding domain for
#=GF RT   an erythrocyte receptor binding protein of P. falciparum. 
#=GF RA   Kochan J, Perkins M, Ravetch JV; 
#=GF RL   Cell 1986;44:689-696.
#=GF RN   [3]
#=GF RM   3298526
#=GF RT   Possible pitfalls in the identification of glycophorin-binding
#=GF RT   proteins of Plasmodium falciparum.
#=GF RA   van Schravendijk MR, Wilson RJ, Newbold CI;
#=GF RL   J Exp Med. 1987;166:376-390.
#=GF DR   INTERPRO; IPR003681;
#=GF CC   This family contains glycophorin binding proteins from P.
#=GF CC   falciparum the malarial parasite [2]. Glycophorin is a cell
#=GF CC   surface protein of erythrocytes. The Glycophorin binding protein
#=GF CC   contains a tandem 38 residue repeat. In Swiss:P02895 the repeat
#=GF CC   occurs 11 times.
#=GF SQ   30
#=GS Q8IEU3_PLAF7/300-337      AC Q8IEU3.1
#=GS Q8IM78_PLAF7/150-186      AC Q8IM78.1
#=GS GBP_PLAF7/377-414         AC Q8I6U8.1
#=GS GBP_PLAF7/676-713         AC Q8I6U8.1
#=GS Q8IEU3_PLAF7/110-147      AC Q8IEU3.1
#=GS Q8IEU3_PLAF7/224-261      AC Q8IEU3.1
#=GS Q8IM78_PLAF7/189-226      AC Q8IM78.1
#=GS A0A024VN44_PLAFA/110-130  AC A0A024VN44.1
#=GS Q8IM78_PLAF7/110-147      AC Q8IM78.1
#=GS A0A024W2C4_PLAFA/134-171  AC A0A024W2C4.1
#=GS Q8IM78_PLAF7/268-305      AC Q8IM78.1
#=GS A0A024WK30_PLAFA/110-128  AC A0A024WK30.1
#=GS Q8IEU3_PLAF7/186-223      AC Q8IEU3.1
#=GS GBP_PLAF7/426-463         AC Q8I6U8.1
#=GS GBP_PLAF7/327-364         AC Q8I6U8.1
#=GS GBP_PLAF7/277-314         AC Q8I6U8.1
#=GS Q8IEU3_PLAF7/262-299      AC Q8IEU3.1
#=GS Q8IEU3_PLAF7/148-185      AC Q8IEU3.1
#=GS GBP_PLAF7/576-613         AC Q8I6U8.1
#=GS GBP_PLAF7/776-813         AC Q8I6U8.1
#=GS A0A024WKT5_PLAFA/110-139  AC A0A024WKT5.1
#=GS A0A024W2C4_PLAFA/110-133  AC A0A024W2C4.1
#=GS A0A024W162_PLAFA/110-135  AC A0A024W162.1
#=GS GBP_PLAF7/726-763         AC Q8I6U8.1
#=GS GBP_PLAF7/227-264         AC Q8I6U8.1
#=GS Q8IM78_PLAF7/228-265      AC Q8IM78.1
#=GS Q8IEU3_PLAF7/338-375      AC Q8IEU3.1
#=GS GBP_PLAF7/626-663         AC Q8I6U8.1
#=GS GBP_PLAF7/526-563         AC Q8I6U8.1
#=GS GBP_PLAF7/476-513         AC Q8I6U8.1
Q8IEU3_PLAF7/300-337                 TSADPEGQIMKAWAADPVYRKHVNVLYQILTHTDPNDE....
Q8IM78_PLAF7/150-186                 TSADPEGQIMKAYAADPEYRKHVNVLYQILNHTD----sse.
GBP_PLAF7/377-414                    TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE....
GBP_PLAF7/676-713                    TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE....
Q8IEU3_PLAF7/110-147                 TSADPEGQIMKAWAADPEYRKHINVLYQILTHTDPNDE....
Q8IEU3_PLAF7/224-261                 TSADPEGQIMKAWAADPEYLKHVNVLYQILTHTDPNDE....
Q8IM78_PLAF7/189-226                 TSADPEGQIMKAYAADPEYRKHVNVLYQILNHTDSNE-v...
A0A024VN44_PLAFA/110-130             TSADPEGQIMKAWAADPEY-------------------lw..
Q8IM78_PLAF7/110-147                 TSADPEGQIMKAYAADPEYRKHLNVLYQILNNTDPNDE....
A0A024W2C4_PLAFA/134-171             TSADPEGQIMKAWAADPEYRKHVNVLYQILTNTDPNDE....
Q8IM78_PLAF7/268-305                 TSADPEGQIMKAYAADPEYRKHVNVLYQILTNTDPNDE....
A0A024WK30_PLAFA/110-128             TSADPEGQIMKAWAADPEY-------------------....
Q8IEU3_PLAF7/186-223                 TSADPEGQIMKAWAADPEYRKHVNVLYQILTHTDPNDE....
GBP_PLAF7/426-463                    TSSDPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE....
GBP_PLAF7/327-364                    TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE....
GBP_PLAF7/277-314                    TSADPEGQIMREYASDPEYRKHLEIFYKILTNTDPNDD....
Q8IEU3_PLAF7/262-299                 TSADPEGQIMKAWAADPEYLKHVNVLYQILTNTDPNDE....
Q8IEU3_PLAF7/148-185                 TSADPEGQIMKAWAADPEYRKHVNVLYQILTHTDPNDE....
GBP_PLAF7/576-613                    TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE....
GBP_PLAF7/776-813                    TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE....
A0A024WKT5_PLAFA/110-139             TSADPEGQIMKAWAADPEYRKHINVLPNI---------n...
A0A024W2C4_PLAFA/110-133             TSADPEGQIMKAWAADPEYH------------------pnde
A0A024W162_PLAFA/110-135             TSADPEGQIMKAYAADPEYRKHLNV-------------r...
GBP_PLAF7/726-763                    TSADPEGQIMREYASDPEYRKHLEIFYKILTNTDPNDD....
GBP_PLAF7/227-264                    TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE....
Q8IM78_PLAF7/228-265                 TSADPEGQIMKAYAADPEYRKHVNVLYQILNNTDPNDE....
Q8IEU3_PLAF7/338-375                 TSADPEGQIMKAWAADPEYRKHVNVLYQILTNTDPNDE....
GBP_PLAF7/626-663                    TSSDPEGQIMREYAADPEYRKHLEIFHKILTNTDPNDE....
GBP_PLAF7/526-563                    TSADPEGQIMREYAADPEYRKHLEIFHKILTNTDPNDE....
GBP_PLAF7/476-513                    TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE....
#=GC seq_cons                        TSADPEGQIMKAYAADPEYRKHlpVhYpILTNTDPNDE....
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