GenomeNet

Database: Pfam
Entry: GBP_repeat
LinkDB: GBP_repeat
Original site: GBP_repeat 
#=GF ID   GBP_repeat
#=GF AC   PF02526.13
#=GF DE   Glycophorin-binding protein
#=GF AU   Bashton M, Bateman A
#=GF SE   Pfam-B_1047 (release 5.4)
#=GF GA   25.00 25.00;
#=GF TC   44.60 43.60;
#=GF NC   22.40 17.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Repeat
#=GF RN   [1]
#=GF RM   7891744
#=GF RT   Isolation of a third member of the Plasmodium falciparum
#=GF RT   glycophorin-binding protein gene family. 
#=GF RA   Rudolph B, Nolte D, Knapp B; 
#=GF RL   Mol Biochem Parasitol 1994;68:173-176.
#=GF RN   [2]
#=GF RM   3512098
#=GF RT   A tandemly repeated sequence determines the binding domain for
#=GF RT   an erythrocyte receptor binding protein of P. falciparum. 
#=GF RA   Kochan J, Perkins M, Ravetch JV; 
#=GF RL   Cell 1986;44:689-696.
#=GF RN   [3]
#=GF RM   3298526
#=GF RT   Possible pitfalls in the identification of glycophorin-binding
#=GF RT   proteins of Plasmodium falciparum.
#=GF RA   van Schravendijk MR, Wilson RJ, Newbold CI;
#=GF RL   J Exp Med. 1987;166:376-390.
#=GF DR   INTERPRO; IPR003681;
#=GF CC   This family contains glycophorin binding proteins from P.
#=GF CC   falciparum the malarial parasite [2]. Glycophorin is a cell
#=GF CC   surface protein of erythrocytes. The Glycophorin binding protein
#=GF CC   contains a tandem 38 residue repeat. In Swiss:P02895 the repeat
#=GF CC   occurs 11 times.
#=GF SQ   89
#=GS A0A0L1I660_PLAFA/227-264  AC A0A0L1I660.1
#=GS A0A0L0D049_PLAFA/160-197  AC A0A0L0D049.1
#=GS Q8IM78_PLAF7/150-186      AC Q8IM78.1
#=GS Q8IEU3_PLAF7/300-337      AC Q8IEU3.1
#=GS W4IYK1_PLAFP/110-147      AC W4IYK1.1
#=GS A0A0L1I3T2_PLAFA/6-27     AC A0A0L1I3T2.1
#=GS Q8IM78_PLAF7/110-147      AC Q8IM78.1
#=GS A0A0L1I5P8_PLAFA/160-197  AC A0A0L1I5P8.1
#=GS GBP_PLAF7/327-364         AC Q8I6U8.1
#=GS W7JTY4_PLAFA/30-67        AC W7JTY4.1
#=GS A0A0L1I5R4_PLAFA/110-147  AC A0A0L1I5R4.1
#=GS GBP_PLAF7/776-813         AC Q8I6U8.1
#=GS A0A0L1I660_PLAFA/477-514  AC A0A0L1I660.1
#=GS W7J7Q0_PLAFA/110-147      AC W7J7Q0.1
#=GS A0A0L1I5P8_PLAFA/236-273  AC A0A0L1I5P8.1
#=GS A0A0L7M8N0_PLAF4/599-636  AC A0A0L7M8N0.1
#=GS A0A0L1I5P8_PLAFA/122-159  AC A0A0L1I5P8.1
#=GS A0A0L0D049_PLAFA/198-235  AC A0A0L0D049.1
#=GS A0A0L1I660_PLAFA/677-714  AC A0A0L1I660.1
#=GS GBP_PLAF7/626-663         AC Q8I6U8.1
#=GS A0A0L0D049_PLAFA/122-159  AC A0A0L0D049.1
#=GS A0A0L1I660_PLAFA/427-464  AC A0A0L1I660.1
#=GS W7JBY3_PLAFA/223-254      AC W7JBY3.1
#=GS A0A0L1I5R4_PLAFA/189-208  AC A0A0L1I5R4.1
#=GS A0A0L1I660_PLAFA/627-664  AC A0A0L1I660.1
#=GS W7JTY4_PLAFA/1-29         AC W7JTY4.1
#=GS GBP_PLAF7/377-414         AC Q8I6U8.1
#=GS GBP_PLAF7/676-713         AC Q8I6U8.1
#=GS A0A0L0CXB6_PLAFA/277-314  AC A0A0L0CXB6.1
#=GS W4IYK1_PLAFP/148-184      AC W4IYK1.1
#=GS A0A0L7M8N0_PLAF4/300-337  AC A0A0L7M8N0.1
#=GS A0A0L7M8N0_PLAF4/449-486  AC A0A0L7M8N0.1
#=GS A0A0L7M8N0_PLAF4/648-685  AC A0A0L7M8N0.1
#=GS A0A024VN44_PLAFA/110-130  AC A0A024VN44.1
#=GS A0A0L7M8N0_PLAF4/200-237  AC A0A0L7M8N0.1
#=GS A0A0L7M8N0_PLAF4/150-187  AC A0A0L7M8N0.1
#=GS Q8IM78_PLAF7/268-305      AC Q8IM78.1
#=GS A0A0L7M817_PLAF4/327-364  AC A0A0L7M817.1
#=GS A0A0L7M817_PLAF4/377-414  AC A0A0L7M817.1
#=GS A0A0L7M8N0_PLAF4/549-586  AC A0A0L7M8N0.1
#=GS GBP_PLAF7/426-463         AC Q8I6U8.1
#=GS A0A0L1I660_PLAFA/327-364  AC A0A0L1I660.1
#=GS A0A0L1I5R4_PLAFA/150-186  AC A0A0L1I5R4.1
#=GS Q8IEU3_PLAF7/148-185      AC Q8IEU3.1
#=GS A0A0L7M817_PLAF4/427-464  AC A0A0L7M817.1
#=GS GBP_PLAF7/576-613         AC Q8I6U8.1
#=GS W4IU77_PLAFP/110-138      AC W4IU77.1
#=GS A0A0L1I660_PLAFA/377-414  AC A0A0L1I660.1
#=GS A0A0L7M817_PLAF4/227-264  AC A0A0L7M817.1
#=GS A0A0L0CXB6_PLAFA/227-264  AC A0A0L0CXB6.1
#=GS A0A0L1I660_PLAFA/527-564  AC A0A0L1I660.1
#=GS A0A024W162_PLAFA/110-135  AC A0A024W162.1
#=GS GBP_PLAF7/227-264         AC Q8I6U8.1
#=GS A0A0L7M817_PLAF4/477-514  AC A0A0L7M817.1
#=GS A0A0L1I5R4_PLAFA/242-279  AC A0A0L1I5R4.1
#=GS A0A0L1I5P8_PLAFA/198-235  AC A0A0L1I5P8.1
#=GS A0A0L1I5P8_PLAFA/312-349  AC A0A0L1I5P8.1
#=GS A0A0L7M8N0_PLAF4/499-536  AC A0A0L7M8N0.1
#=GS A0A0L1I660_PLAFA/577-614  AC A0A0L1I660.1
#=GS A0A0L1I5R4_PLAFA/209-239  AC A0A0L1I5R4.1
#=GS Q8IEU3_PLAF7/110-147      AC Q8IEU3.1
#=GS A0A0L7M817_PLAF4/277-314  AC A0A0L7M817.1
#=GS A0A024W2C4_PLAFA/134-171  AC A0A024W2C4.1
#=GS A0A0L0D049_PLAFA/236-273  AC A0A0L0D049.1
#=GS A0A0L0CXB6_PLAFA/327-364  AC A0A0L0CXB6.1
#=GS GBP_PLAF7/277-314         AC Q8I6U8.1
#=GS W7JPN2_PLAFO/110-128      AC W7JPN2.1
#=GS A0A0L1I3T2_PLAFA/40-59    AC A0A0L1I3T2.1
#=GS Q8IEU3_PLAF7/262-299      AC Q8IEU3.1
#=GS A0A024WKT5_PLAFA/110-139  AC A0A024WKT5.1
#=GS W7K094_PLAFA/110-147      AC W7K094.1
#=GS W7JMH7_PLAFO/110-131      AC W7JMH7.1
#=GS GBP_PLAF7/526-563         AC Q8I6U8.1
#=GS Q8IEU3_PLAF7/224-261      AC Q8IEU3.1
#=GS Q8IM78_PLAF7/189-226      AC Q8IM78.1
#=GS A0A0L7M8N0_PLAF4/250-287  AC A0A0L7M8N0.1
#=GS A0A0L7M8N0_PLAF4/399-436  AC A0A0L7M8N0.1
#=GS A0A024WK30_PLAFA/110-128  AC A0A024WK30.1
#=GS Q8IEU3_PLAF7/186-223      AC Q8IEU3.1
#=GS A0A0L1I5P8_PLAFA/274-311  AC A0A0L1I5P8.1
#=GS A0A0L7M8N0_PLAF4/349-386  AC A0A0L7M8N0.1
#=GS W7K094_PLAFA/150-180      AC W7K094.1
#=GS A0A024W2C4_PLAFA/110-133  AC A0A024W2C4.1
#=GS GBP_PLAF7/726-763         AC Q8I6U8.1
#=GS Q8IM78_PLAF7/228-265      AC Q8IM78.1
#=GS Q8IEU3_PLAF7/338-375      AC Q8IEU3.1
#=GS GBP_PLAF7/476-513         AC Q8I6U8.1
#=GS W7J7Q0_PLAFA/148-177      AC W7J7Q0.1
#=GS A0A0L1I660_PLAFA/277-314  AC A0A0L1I660.1
A0A0L1I660_PLAFA/227-264             ....TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE........
A0A0L0D049_PLAFA/160-197             ....TSADPEGQIMKAWAADPEYRKHINVLYQILTHTDPNDE........
Q8IM78_PLAF7/150-186                 ....TSADPEGQIMKAYAADPEYRKHVNVLYQILNHTD----sse.....
Q8IEU3_PLAF7/300-337                 ....TSADPEGQIMKAWAADPVYRKHVNVLYQILTHTDPNDE........
W4IYK1_PLAFP/110-147                 ....TSADPEGQIMKAWAADPEYRKHINVLYQILTHTDPNDE........
A0A0L1I3T2_PLAFA/6-27                ...i-----------------EYRKHLEIFYKILTNTDPNDD........
Q8IM78_PLAF7/110-147                 ....TSADPEGQIMKAYAADPEYRKHLNVLYQILNNTDPNDE........
A0A0L1I5P8_PLAFA/160-197             ....TSADPEGQIMKAWAADPEYRKHVNVLYQILTHTDPNDE........
GBP_PLAF7/327-364                    ....TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
W7JTY4_PLAFA/30-67                   ....TSADPEGQIMKAYAADPEYRKHVNVLYQILNNTDPNDE........
A0A0L1I5R4_PLAFA/110-147             ....TSADPEGQIMKAYAADPEYRKHLNVLYQILNNTDPNDE........
GBP_PLAF7/776-813                    ....TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
A0A0L1I660_PLAFA/477-514             ....TSADPEGQIMREYAADPEYSKHLEVFHKILTNTDPNDE........
W7J7Q0_PLAFA/110-147                 ....TSADPEGQIMKAWAADPEYRKHINVLYQILTHTDPNDE........
A0A0L1I5P8_PLAFA/236-273             ....TSADPEGQIMKAWAADPEYLKHVNVLYQILTNTDPNDE........
A0A0L7M8N0_PLAF4/599-636             ....TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
A0A0L1I5P8_PLAFA/122-159             ....TSADPEGQIMKAWAADPEYRKHINVLYQILTHTDPNDE........
A0A0L0D049_PLAFA/198-235             ....TSADPEGQIMKAWAADPEYRKHVNVLYQILTHTDPNDE........
A0A0L1I660_PLAFA/677-714             ....TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
GBP_PLAF7/626-663                    ....TSSDPEGQIMREYAADPEYRKHLEIFHKILTNTDPNDE........
A0A0L0D049_PLAFA/122-159             ....TSADPEGQIMKAWAADPEYRKHINVLYQILTHTDPNDE........
A0A0L1I660_PLAFA/427-464             ....TSADPEGQIMREYAADPEYRKHLEIFHKILTNTDPNDE........
W7JBY3_PLAFA/223-254                 qetl----------TKYAADPEYRKHLEVFHKILTNTDPNDE........
A0A0L1I5R4_PLAFA/189-208             ....TSADPEGQIMKAYAADPEYR------------------........
A0A0L1I660_PLAFA/627-664             ....TSADPEGQIMREYASDPEYRKHLEIFYKILTNTDPNDD........
W7JTY4_PLAFA/1-29                    ....---------MKAWAADPVYRKHVNVLYQILTHTDPNDE........
GBP_PLAF7/377-414                    ....TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
GBP_PLAF7/676-713                    ....TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE........
A0A0L0CXB6_PLAFA/277-314             ....TSADPEGQIMREYASDPEYRKHLEIFYKILTNTDPNDD........
W4IYK1_PLAFP/148-184                 ....TSADPE-QIMKAWAADPEYRKHVNVLYQILNNTDPNDE........
A0A0L7M8N0_PLAF4/300-337             ....TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
A0A0L7M8N0_PLAF4/449-486             ....TSADPEGQIMREYAADPEYRKHLEIFHKILTNTDPNDE........
A0A0L7M8N0_PLAF4/648-685             ....TSSDPAGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
A0A024VN44_PLAFA/110-130             ....TSADPEGQIMKAWAADPEY-------------------lw......
A0A0L7M8N0_PLAF4/200-237             ....TSADPEGQIMREYASDPEYRKHLEIFYKILTNTDPNDD........
A0A0L7M8N0_PLAF4/150-187             ....TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE........
Q8IM78_PLAF7/268-305                 ....TSADPEGQIMKAYAADPEYRKHVNVLYQILTNTDPNDE........
A0A0L7M817_PLAF4/327-364             ....TSSDPEGQIMREYAADPEYRKHLEIFHKILTNTDPNDE........
A0A0L7M817_PLAF4/377-414             ....TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE........
A0A0L7M8N0_PLAF4/549-586             ....TSSDPEGQIMREYAADPEYRKHLEIFHKILTNTDPNDE........
GBP_PLAF7/426-463                    ....TSSDPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
A0A0L1I660_PLAFA/327-364             ....TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
A0A0L1I5R4_PLAFA/150-186             ....TSADPEGQIMKAYAADPEYRKHVNVLYQILNHTD----sse.....
Q8IEU3_PLAF7/148-185                 ....TSADPEGQIMKAWAADPEYRKHVNVLYQILTHTDPNDE........
A0A0L7M817_PLAF4/427-464             ....TSADPEGQIMREYASDPEYRKHLEIFYKILTNTDPNDD........
GBP_PLAF7/576-613                    ....TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE........
W4IU77_PLAFP/110-138                 ....TSADPEGQIMKAWAADPEYRKH----------------qliqniv.
A0A0L1I660_PLAFA/377-414             ....TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
A0A0L7M817_PLAF4/227-264             ....TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE........
A0A0L0CXB6_PLAFA/227-264             ....TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE........
A0A0L1I660_PLAFA/527-564             ....TSADPEGQIMREYAADPEYRKHLEIFHKILTNTDPNDE........
A0A024W162_PLAFA/110-135             ....TSADPEGQIMKAYAADPEYRKHLNV-------------r.......
GBP_PLAF7/227-264                    ....TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE........
A0A0L7M817_PLAF4/477-514             ....TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
A0A0L1I5R4_PLAFA/242-279             ....TSADPEGQIMKAYAADPEYRKHVNVLYQILNNTDPNDE........
A0A0L1I5P8_PLAFA/198-235             ....TSADPEGQIMKAWAADPEYLKHVNVLYQILTHTDPNDE........
A0A0L1I5P8_PLAFA/312-349             ....TSADPEGQIMKAWAADPEYRKHVNVLYQILTNTDPNDE........
A0A0L7M8N0_PLAF4/499-536             ....TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE........
A0A0L1I660_PLAFA/577-614             ....TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE........
A0A0L1I5R4_PLAFA/209-239             ....-------QIMKAYAADPEYRKHVNVLYQILNNTDPNDE........
Q8IEU3_PLAF7/110-147                 ....TSADPEGQIMKAWAADPEYRKHINVLYQILTHTDPNDE........
A0A0L7M817_PLAF4/277-314             ....TSADPEGQIMREYAADPEYRKHLEIFYKILTNTDPNDE........
A0A024W2C4_PLAFA/134-171             ....TSADPEGQIMKAWAADPEYRKHVNVLYQILTNTDPNDE........
A0A0L0D049_PLAFA/236-273             ....TSADPEGQIMKAWAADPEYLKHVNVLYQILTNTDPNDE........
A0A0L0CXB6_PLAFA/327-364             ....TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
GBP_PLAF7/277-314                    ....TSADPEGQIMREYASDPEYRKHLEIFYKILTNTDPNDD........
W7JPN2_PLAFO/110-128                 ....TSADPEGQIMKAWAADPEY-------------------........
A0A0L1I3T2_PLAFA/40-59               ....TSADPEGQIMREYAADPEY-------------------s.......
Q8IEU3_PLAF7/262-299                 ....TSADPEGQIMKAWAADPEYLKHVNVLYQILTNTDPNDE........
A0A024WKT5_PLAFA/110-139             ....TSADPEGQIMKAWAADPEYRKHINVLPNI---------n.......
W7K094_PLAFA/110-147                 ....TSADPEGQIMKAYAADPEYRKHLNVLYQILNNTDPNDE........
W7JMH7_PLAFO/110-131                 ....TSADPEGQIMKAYAADPEYRKH----------------........
GBP_PLAF7/526-563                    ....TSADPEGQIMREYAADPEYRKHLEIFHKILTNTDPNDE........
Q8IEU3_PLAF7/224-261                 ....TSADPEGQIMKAWAADPEYLKHVNVLYQILTHTDPNDE........
Q8IM78_PLAF7/189-226                 ....TSADPEGQIMKAYAADPEYRKHVNVLYQILNHTDSNE-v.......
A0A0L7M8N0_PLAF4/250-287             ....TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
A0A0L7M8N0_PLAF4/399-436             ....TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
A0A024WK30_PLAFA/110-128             ....TSADPEGQIMKAWAADPEY-------------------........
Q8IEU3_PLAF7/186-223                 ....TSADPEGQIMKAWAADPEYRKHVNVLYQILTHTDPNDE........
A0A0L1I5P8_PLAFA/274-311             ....TSADPEGQIMKAWAADPVYRKHVNVLYQILTHTDPNDE........
A0A0L7M8N0_PLAF4/349-386             ....TSSDPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
W7K094_PLAFA/150-180                 ....TSADPEGQIMKAYAADPEYRKHVNVLF-----------flif....
A0A024W2C4_PLAFA/110-133             ....TSADPEGQIMKAWAADPEYH------------------pnde....
GBP_PLAF7/726-763                    ....TSADPEGQIMREYASDPEYRKHLEIFYKILTNTDPNDD........
Q8IM78_PLAF7/228-265                 ....TSADPEGQIMKAYAADPEYRKHVNVLYQILNNTDPNDE........
Q8IEU3_PLAF7/338-375                 ....TSADPEGQIMKAWAADPEYRKHVNVLYQILTNTDPNDE........
GBP_PLAF7/476-513                    ....TSADPEGQIMREYAADPEYRKHLEVFHKILTNTDPNDE........
W7J7Q0_PLAFA/148-177                 ....TSADPEGQIMKAWAADPEYQKK----------------kkkiiiri
A0A0L1I660_PLAFA/277-314             ....TSADPEGQIMREYASDPEYRKHLEIFYKILTNTDPNDD........
#=GC seq_cons                        ....TSADPEGQIM+tYAADPEYRKHlpVhapILTNTDPNDE........
//
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