GenomeNet

Database: Pfam
Entry: HTH_25
LinkDB: HTH_25
Original site: HTH_25 
#=GF ID   HTH_25
#=GF AC   PF13413.2
#=GF DE   Helix-turn-helix domain
#=GF AU   Bateman A
#=GF SE   Jackhmmer:Q87B38
#=GF GA   24.60 24.60;
#=GF TC   24.60 24.60;
#=GF NC   24.50 24.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   Helix-turn-helix
#=GF DR   INTERPRO; IPR010982;
#=GF CC   This domain is a helix-turn-helix domain that probably binds to
#=GF CC   DNA.
#=GF SQ   13552
#=GS A0A018I9C0_STAAU/7-68     AC A0A018I9C0.1
#=GS A0A036FEC0_STAAU/7-68     AC A0A036FEC0.1
#=GS S5A0P0_LACRH/7-68         AC S5A0P0.1
#=GS U5T301_9GAMM/23-84        AC U5T301.1
#=GS Y9IGT6_STAAU/7-68         AC Y9IGT6.1
#=GS Q1IEI2_PSEE4/19-80        AC Q1IEI2.1
#=GS X2UGZ4_SALEN/18-79        AC X2UGZ4.1
#=GS Y9R6C6_STAAU/7-68         AC Y9R6C6.1
#=GS A0A030EBR5_STRPY/9-69     AC A0A030EBR5.1
#=GS N6R4B3_STAAU/7-68         AC N6R4B3.1
#=GS A0A036ATH2_STAAU/7-68     AC A0A036ATH2.1
#=GS K9VC39_9CYAN/211-272      AC K9VC39.1
#=GS S9ZD41_STAAU/7-68         AC S9ZD41.1
#=GS I1VNC2_PASMD/18-80        AC I1VNC2.1
#=GS V7XIJ7_SALTM/18-79        AC V7XIJ7.1
#=GS U0C248_ECOLX/18-79        AC U0C248.1
#=GS G0D7S9_ECOLX/18-79        AC G0D7S9.1
#=GS Z3K7R0_STAAU/7-68         AC Z3K7R0.1
#=GS A0A015C9I3_ACIBA/29-90    AC A0A015C9I3.1
#=GS V2RIH5_9BACT/7-68         AC V2RIH5.1
#=GS A0A033Z5Y9_STAAU/7-68     AC A0A033Z5Y9.1
#=GS J1FST5_VIBCL/30-91        AC J1FST5.1
#=GS N5K278_STAAU/7-68         AC N5K278.1
#=GS A0A009C0M2_STAAU/7-68     AC A0A009C0M2.1
#=GS I4FKJ8_MICAE/25-86        AC I4FKJ8.1
#=GS N6QQI6_STAAU/7-68         AC N6QQI6.1
#=GS A0A018TV64_SALET/18-79    AC A0A018TV64.1
#=GS S5V7J8_BORBG/12-73        AC S5V7J8.1
#=GS V1KT81_SALET/18-79        AC V1KT81.1
#=GS T9LR94_ECOLX/18-79        AC T9LR94.1
#=GS D8CAA2_ECOLX/18-79        AC D8CAA2.1
#=GS G7R367_ECOC2/18-79        AC G7R367.1
#=GS B6IZN0_COXB2/18-79        AC B6IZN0.1
#=GS E3EHI6_PAEPS/7-68         AC E3EHI6.1
#=GS N6IT81_STAAU/7-68         AC N6IT81.1
#=GS X6PYF3_9STRE/9-70         AC X6PYF3.1
#=GS A5UQQ0_ROSS1/7-68         AC A5UQQ0.1
#=GS A0A009CLI4_STAAU/7-68     AC A0A009CLI4.1
#=GS Y6GQQ6_STAAU/7-68         AC Y6GQQ6.1
#=GS V2DR63_SALET/18-79        AC V2DR63.1
#=GS A0A038GZI9_9BURK/50-111   AC A0A038GZI9.1
#=GS Z2UN91_STAAU/7-68         AC Z2UN91.1
#=GS Z0E0Z2_STAAU/7-68         AC Z0E0Z2.1
#=GS K8SAL2_SALTM/18-79        AC K8SAL2.1
#=GS A0A017ZHM3_STAAU/7-68     AC A0A017ZHM3.1
#=GS Y4GJX5_STAAU/7-68         AC Y4GJX5.1
#=GS S9ZNW5_9RHOO/1-61         AC S9ZNW5.1
#=GS N5R7R2_STAAU/7-68         AC N5R7R2.1
#=GS Y7QDX0_STAAU/7-68         AC Y7QDX0.1
#=GS A0A036RCK4_STAAU/7-68     AC A0A036RCK4.1
#=GS A0A035JJL8_STAAU/7-68     AC A0A035JJL8.1
#=GS U4JRV3_9VIBR/21-82        AC U4JRV3.1
#=GS A0A009KKG7_ACIBA/29-90    AC A0A009KKG7.1
#=GS Z9T4A5_STAAU/7-68         AC Z9T4A5.1
#=GS A0A013B1K5_STAAU/7-68     AC A0A013B1K5.1
#=GS U4JKK6_9VIBR/21-82        AC U4JKK6.1
#=GS I0W0D3_9STRE/9-70         AC I0W0D3.1
#=GS Y4W8P7_STAAU/7-68         AC Y4W8P7.1
#=GS Z5PAE9_KLEPN/18-79        AC Z5PAE9.1
#=GS R2GX55_ENTFL/9-70         AC R2GX55.1
#=GS A0A011C7D9_ACIBA/29-90    AC A0A011C7D9.1
#=GS N5UWE5_STAAU/7-68         AC N5UWE5.1
#=GS W0EAT2_9FIRM/7-68         AC W0EAT2.1
#=GS L3BPD9_ECOLX/18-79        AC L3BPD9.1
#=GS A0A009Z8N9_ACIBA/29-90    AC A0A009Z8N9.1
#=GS R2CM24_ENTFC/9-70         AC R2CM24.1
#=GS E1R7Z0_SPISS/7-68         AC E1R7Z0.1
#=GS U2ZZ55_VIBAL/19-80        AC U2ZZ55.1
#=GS K5U2I1_9VIBR/19-80        AC K5U2I1.1
#=GS Y8LRW8_STAAU/7-68         AC Y8LRW8.1
#=GS B8CKR0_SHEPW/27-88        AC B8CKR0.1
#=GS X8Z4B3_STAAU/7-68         AC X8Z4B3.1
#=GS A0A012D503_STAAU/7-68     AC A0A012D503.1
#=GS K9ZI59_ANACC/20-81        AC K9ZI59.1
#=GS W4F0E0_9BACL/10-71        AC W4F0E0.1
#=GS A0A026MWQ5_ECOLX/18-79    AC A0A026MWQ5.1
#=GS Y5KX12_STAAU/7-68         AC Y5KX12.1
#=GS A0A008XZX3_STAAU/7-68     AC A0A008XZX3.1
#=GS L9GW38_ECOLX/18-79        AC L9GW38.1
#=GS L3KZV1_ECOLX/18-79        AC L3KZV1.1
#=GS Z2IFJ9_STAAU/7-68         AC Z2IFJ9.1
#=GS X1AFF9_9ZZZZ/7-68         AC X1AFF9.1
#=GS K8ULA5_SALTM/18-79        AC K8ULA5.1
#=GS A3MK76_BURM7/61-122       AC A3MK76.2
#=GS M9JYA8_ECOLX/18-79        AC M9JYA8.1
#=GS A0A028WV54_STAAU/7-68     AC A0A028WV54.1
#=GS F5QMC3_SHIFL/18-79        AC F5QMC3.1
#=GS N6BEX5_STAAU/7-68         AC N6BEX5.1
#=GS A0A027XSV1_ECO57/18-79    AC A0A027XSV1.1
#=GS A0A037AA83_STAAU/7-68     AC A0A037AA83.1
#=GS Q608X3_METCA/20-81        AC Q608X3.1
#=GS Z5TNC3_KLEOX/18-79        AC Z5TNC3.1
#=GS T7GGV1_ECOLX/18-79        AC T7GGV1.1
#=GS Z1G8W2_STAAU/7-68         AC Z1G8W2.1
#=GS Y0CZJ9_STAAU/7-68         AC Y0CZJ9.1
#=GS Y6HKA8_STAAU/7-68         AC Y6HKA8.1
#=GS A0A017LIS3_ECOLX/18-79    AC A0A017LIS3.1
#=GS V9YRE8_BURPE/34-95        AC V9YRE8.1
#=GS U7G421_9ALTE/18-79        AC U7G421.1
#=GS A0A014X1S2_ACIBA/29-90    AC A0A014X1S2.1
#=GS Y6K3K2_STAAU/7-68         AC Y6K3K2.1
#=GS R1QCP0_ENTFL/11-56        AC R1QCP0.1
#=GS A0A035CX02_STAAU/7-68     AC A0A035CX02.1
#=GS S2ULH3_LACPA/7-68         AC S2ULH3.1
#=GS S2UYN1_STREE/9-70         AC S2UYN1.1
#=GS A8YN50_MICAE/18-79        AC A8YN50.1
#=GS V1ZH04_SALET/18-79        AC V1ZH04.1
#=GS E1I8H0_ECOLX/18-79        AC E1I8H0.1
#=GS F3WKQ3_SHIBO/18-79        AC F3WKQ3.1
#=GS X5JMP0_9NOST/33-94        AC X5JMP0.1
#=GS J8QT42_BACCE/7-68         AC J8QT42.1
#=GS Z7IXE6_STAAU/7-68         AC Z7IXE6.1
#=GS A0A013NYV3_ACIBA/29-90    AC A0A013NYV3.1
#=GS L6LEA3_SALEN/18-79        AC L6LEA3.1
#=GS V1NYZ1_SALRU/18-79        AC V1NYZ1.1
#=GS R6HR25_9PROT/38-99        AC R6HR25.1
#=GS R1TGL4_ENTFL/11-56        AC R1TGL4.1
#=GS Y3KWC1_STAAU/7-68         AC Y3KWC1.1
#=GS Y9W3R2_STAAU/7-68         AC Y9W3R2.1
#=GS A0A017GZE5_ACIBA/29-90    AC A0A017GZE5.1
#=GS N9KP92_9GAMM/28-89        AC N9KP92.1
#=GS E7RVP7_9BURK/36-97        AC E7RVP7.1
#=GS Y8A583_STAAU/7-68         AC Y8A583.1
#=GS G9SMK7_CITFR/18-79        AC G9SMK7.1
#=GS J0XRV8_STREE/9-70         AC J0XRV8.1
#=GS Y5FT62_STAAU/7-68         AC Y5FT62.1
#=GS Y3V3A0_STAAU/7-68         AC Y3V3A0.1
#=GS T0GVC6_9LEPT/9-70         AC T0GVC6.1
#=GS C0AVN5_9ENTR/17-78        AC C0AVN5.1
#=GS A0A008PBI5_STAAU/7-68     AC A0A008PBI5.1
#=GS U1L8N7_9GAMM/17-78        AC U1L8N7.1
#=GS R4YDB6_KLEPN/18-79        AC R4YDB6.1
#=GS I3GNF8_STAAU/7-68         AC I3GNF8.1
#=GS A0A059N2P5_ENTFL/9-70     AC A0A059N2P5.1
#=GS I0C3X9_STAA5/7-68         AC I0C3X9.1
#=GS D5C7L7_ENTCC/18-79        AC D5C7L7.1
#=GS R2UTH5_ENTFC/9-70         AC R2UTH5.1
#=GS A0A023VEN9_CITFR/18-79    AC A0A023VEN9.1
#=GS M6F460_9LEPT/9-70         AC M6F460.1
#=GS Y7SZW4_STAAU/7-68         AC Y7SZW4.1
#=GS X8MH67_9ENTR/17-78        AC X8MH67.1
#=GS X6TFK0_ENTFL/9-70         AC X6TFK0.1
#=GS E4JKN9_ENTFC/22-83        AC E4JKN9.1
#=GS N6KXS4_STAAU/7-68         AC N6KXS4.1
#=GS Q2W6V6_MAGSA/61-122       AC Q2W6V6.1
#=GS X8PL63_STAAU/7-68         AC X8PL63.1
#=GS N6QH51_STAAU/7-68         AC N6QH51.1
#=GS C8M2T1_STAAU/7-68         AC C8M2T1.1
#=GS Q048D0_LACDB/6-66         AC Q048D0.1
#=GS M4HWB7_STREE/12-73        AC M4HWB7.1
#=GS C2XXP4_BACCE/10-71        AC C2XXP4.1
#=GS N9PZR7_9GAMM/29-90        AC N9PZR7.1
#=GS V8SKE6_ECOLX/18-79        AC V8SKE6.1
#=GS Q1QD19_PSYCK/19-80        AC Q1QD19.1
#=GS Y0Y2H6_STAAU/7-68         AC Y0Y2H6.1
#=GS R5Z2M8_9MOLU/7-68         AC R5Z2M8.1
#=GS U7EGL4_YERPE/2-63         AC U7EGL4.2
#=GS Y9SY49_STAAU/7-68         AC Y9SY49.1
#=GS A0A010SKW5_ACIBA/29-90    AC A0A010SKW5.1
#=GS L0UUC6_CHLTH/15-76        AC L0UUC6.1
#=GS Z6EWP5_STAAU/7-68         AC Z6EWP5.1
#=GS E1EFA6_VIBPH/19-80        AC E1EFA6.1
#=GS N1CY93_SALET/18-79        AC N1CY93.1
#=GS Z5EUM9_KLEPN/18-79        AC Z5EUM9.1
#=GS Q0I876_SYNS3/24-85        AC Q0I876.1
#=GS L1FWH7_ECOLX/18-79        AC L1FWH7.1
#=GS K4LD38_9FIRM/7-68         AC K4LD38.1
#=GS W5UYI0_FRATU/7-69         AC W5UYI0.1
#=GS W1QS41_PSEAI/21-82        AC W1QS41.1
#=GS S4B2C7_ENTCA/10-71        AC S4B2C7.1
#=GS A0A027DCS3_ECO57/18-79    AC A0A027DCS3.1
#=GS X9LQ72_STAAU/7-68         AC X9LQ72.1
#=GS W3P6V5_ACIBA/29-90        AC W3P6V5.1
#=GS L9AHK8_ECOLX/18-79        AC L9AHK8.1
#=GS E9S2M3_TREDN/7-68         AC E9S2M3.1
#=GS H7IAS3_STREE/9-70         AC H7IAS3.1
#=GS A0A032VYP1_STAAU/7-68     AC A0A032VYP1.1
#=GS L4JKR5_ECOLX/18-79        AC L4JKR5.1
#=GS H4HZF4_ECOLX/18-79        AC H4HZF4.1
#=GS D6IZU0_STAAU/7-68         AC D6IZU0.1
#=GS A0A023RJY1_AERME/21-82    AC A0A023RJY1.1
#=GS X5J2R0_BORBO/26-87        AC X5J2R0.1
#=GS R1RTU2_ENTFL/9-70         AC R1RTU2.1
#=GS Z7XYN8_STAAU/7-68         AC Z7XYN8.1
#=GS B2NNK0_ECO57/18-79        AC B2NNK0.1
#=GS M7JTH0_VIBCL/30-91        AC M7JTH0.1
#=GS T8ASG1_ECOLX/18-79        AC T8ASG1.1
#=GS T7V9U3_ECOLX/18-79        AC T7V9U3.1
#=GS L5A4Z9_ECOLX/18-79        AC L5A4Z9.1
#=GS A0A014DUI7_ACIBA/29-90    AC A0A014DUI7.1
#=GS X9Z6Y6_STAAU/7-68         AC X9Z6Y6.1
#=GS A0A032Q1L8_STAAU/7-68     AC A0A032Q1L8.1
#=GS Y9DK14_STAAU/7-68         AC Y9DK14.1
#=GS Z6E5X0_STAAU/7-68         AC Z6E5X0.1
#=GS Z4UFK4_STAAU/7-68         AC Z4UFK4.1
#=GS E0H5E1_ENTFL/9-70         AC E0H5E1.1
#=GS B5YKY2_THEYD/4-65         AC B5YKY2.1
#=GS S1E1L2_ECOLX/18-79        AC S1E1L2.1
#=GS W5SIG2_9SPIO/12-71        AC W5SIG2.1
#=GS Q1WT11_LACS1/7-68         AC Q1WT11.1
#=GS R1QT68_ENTFL/11-56        AC R1QT68.1
#=GS E6QTN7_9ZZZZ/16-76        AC E6QTN7.1
#=GS Y3SW79_STAAU/7-68         AC Y3SW79.1
#=GS A0A030T7F3_PSEAI/21-82    AC A0A030T7F3.1
#=GS V8R282_9PSED/19-80        AC V8R282.1
#=GS O83354_TREPA/7-68         AC O83354.1
#=GS I7WLV0_STRCB/9-67         AC I7WLV0.1
#=GS T5JWH1_LACPN/14-75        AC T5JWH1.1
#=GS V9CIJ4_BORPT/26-87        AC V9CIJ4.1
#=GS L3Z4L0_ECOLX/18-79        AC L3Z4L0.1
#=GS E6RQL0_PSEU9/18-79        AC E6RQL0.1
#=GS G2NPL3_9ACTO/17-78        AC G2NPL3.1
#=GS Y8J9B9_STAAU/7-68         AC Y8J9B9.1
#=GS N9ESR7_ACICA/29-90        AC N9ESR7.1
#=GS H4NAA4_ECOLX/18-79        AC H4NAA4.1
#=GS A0A012AX71_STAAU/7-68     AC A0A012AX71.1
#=GS M8QU60_ECOLX/18-79        AC M8QU60.1
#=GS A0A037K1Y4_STAAU/7-68     AC A0A037K1Y4.1
#=GS N6NHV4_STAAU/7-68         AC N6NHV4.1
#=GS D5AF36_STRGZ/9-70         AC D5AF36.1
#=GS A0A025RRB3_ECOLX/18-79    AC A0A025RRB3.1
#=GS T9SA98_ECOLX/18-79        AC T9SA98.1
#=GS Y3CC49_STAAU/7-68         AC Y3CC49.1
#=GS A0A008ZUP0_STAAU/7-68     AC A0A008ZUP0.1
#=GS B4SSW5_STRM5/19-80        AC B4SSW5.1
#=GS A0A032QLY2_STAAU/7-68     AC A0A032QLY2.1
#=GS Y5H5K6_STAAU/7-68         AC Y5H5K6.1
#=GS A0A038EGI3_SALTM/18-79    AC A0A038EGI3.1
#=GS Y8GQU4_STAAU/7-68         AC Y8GQU4.1
#=GS Z7QGJ7_STAAU/7-68         AC Z7QGJ7.1
#=GS Y3ELY1_STAAU/7-68         AC Y3ELY1.1
#=GS Y2MKS1_STAAU/7-68         AC Y2MKS1.1
#=GS C6GT00_STRSX/9-70         AC C6GT00.1
#=GS Y3UBT6_STAAU/7-68         AC Y3UBT6.1
#=GS F6F558_CHLPS/15-76        AC F6F558.1
#=GS J2XFF1_9PSED/19-80        AC J2XFF1.1
#=GS M7JND2_VIBCL/30-91        AC M7JND2.1
#=GS S5Q3P0_CHLTH/15-76        AC S5Q3P0.1
#=GS K4XK17_ECOLX/18-79        AC K4XK17.1
#=GS C2E5B4_LACJH/7-68         AC C2E5B4.1
#=GS Q02RV8_PSEAB/21-82        AC Q02RV8.1
#=GS A0A035H9F0_STAAU/7-68     AC A0A035H9F0.1
#=GS J1UVS6_STREE/9-70         AC J1UVS6.1
#=GS X3HPZ4_SALEN/18-79        AC X3HPZ4.1
#=GS N5GLE7_STAAU/7-68         AC N5GLE7.1
#=GS U8WCV7_PSEAI/21-82        AC U8WCV7.1
#=GS Y3QBM6_STAAU/7-68         AC Y3QBM6.1
#=GS A0A018Y236_SALET/18-79    AC A0A018Y236.1
#=GS W2DN54_9PSED/19-80        AC W2DN54.1
#=GS A0A059GAT3_9RHOB/70-130   AC A0A059GAT3.1
#=GS X6QCE5_9ENTR/17-78        AC X6QCE5.1
#=GS G6P548_STREE/9-70         AC G6P548.1
#=GS R8PMK4_BACCE/7-68         AC R8PMK4.1
#=GS L6DQV4_SALEN/18-79        AC L6DQV4.1
#=GS Y4T7C9_STAAU/7-68         AC Y4T7C9.1
#=GS Z4BGB8_STAAU/7-68         AC Z4BGB8.1
#=GS Z8KH28_STAAU/7-68         AC Z8KH28.1
#=GS C2HVB1_VIBAB/34-95        AC C2HVB1.1
#=GS I2R1D3_9ESCH/18-79        AC I2R1D3.1
#=GS V0LQD6_SALET/18-79        AC V0LQD6.1
#=GS Y9DK92_STAAU/7-68         AC Y9DK92.1
#=GS I9XQI4_SALNE/18-79        AC I9XQI4.1
#=GS A0A058W3D9_BORBO/4-65     AC A0A058W3D9.1
#=GS A0A011P6J8_9PROT/41-102   AC A0A011P6J8.1
#=GS Z4AJG6_STAAU/7-68         AC Z4AJG6.1
#=GS A0A037G838_STAAU/7-68     AC A0A037G838.1
#=GS A0A011BR67_ACIBA/29-90    AC A0A011BR67.1
#=GS S5QV72_CHLTH/15-76        AC S5QV72.1
#=GS D3LCY2_ENTFC/22-83        AC D3LCY2.2
#=GS A0A018FRD8_STAAU/7-68     AC A0A018FRD8.1
#=GS A0A058Y2A9_BORBO/4-65     AC A0A058Y2A9.1
#=GS Y3X181_STAAU/7-68         AC Y3X181.1
#=GS Z2TM19_STAAU/7-68         AC Z2TM19.1
#=GS A0A037VXF5_PSEAI/21-82    AC A0A037VXF5.1
#=GS Y3FA76_STAAU/7-68         AC Y3FA76.1
#=GS R2SID5_ENTFL/9-70         AC R2SID5.1
#=GS A0A020MBA0_STAAU/7-68     AC A0A020MBA0.1
#=GS K4YWC0_ACIBA/29-90        AC K4YWC0.1
#=GS V4ESV7_ECOLX/18-79        AC V4ESV7.1
#=GS K9CFZ8_ACIBA/29-90        AC K9CFZ8.1
#=GS E0R0U3_ECOLX/18-79        AC E0R0U3.1
#=GS U8HR67_PSEAI/21-82        AC U8HR67.1
#=GS T6L409_ECOLX/18-79        AC T6L409.1
#=GS A0A030AIF1_STRPY/9-69     AC A0A030AIF1.1
#=GS A0A009RUC7_ACIBA/29-90    AC A0A009RUC7.1
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