GenomeNet

Database: Pfam
Entry: KorB_C
LinkDB: KorB_C
Original site: KorB_C 
#=GF ID   KorB_C
#=GF AC   PF06613.10
#=GF DE   KorB C-terminal beta-barrel domain
#=GF AU   Bateman A
#=GF SE   Pfam-B_20369 (release 10.0)
#=GF GA   25.00 25.00;
#=GF TC   27.60 26.70;
#=GF NC   24.30 22.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   3430606
#=GF RT   Nucleotide sequence of korB, a replication control gene of broad
#=GF RT   host-range plasmid RK2. 
#=GF RA   Kornacki JA, Balderes PJ, Figurski DH; 
#=GF RL   J Mol Biol 1987;198:211-222.
#=GF DR   INTERPRO; IPR010575;
#=GF DR   SCOP; 1igq; fa;
#=GF CC   This family consists of several KorB transcriptional repressor
#=GF CC   proteins. The korB gene is a major regulatory element in the
#=GF CC   replication and maintenance of broad host-range plasmid RK2. It
#=GF CC   negatively controls the replication gene trfA, the host-lethal
#=GF CC   determinants kilA and kilB, and the korA-korB operon [1]. This
#=GF CC   beta-barrel domain is found at the C-terminus of KorB.
#=GF SQ   24
#=GS K7I2N4_CAEJA/654-710      AC K7I2N4.1
#=GS G4T4H9_META2/291-349      AC G4T4H9.1
#=GS C7RVT8_ACCPU/288-346      AC C7RVT8.1
#=GS A0A0Q6W203_9BURK/279-337  AC A0A0Q6W203.1
#=GS L0WCE1_9GAMM/281-339      AC L0WCE1.1
#=GS K7I2N5_CAEJA/654-710      AC K7I2N5.1
#=GS B1M9T9_METRJ/318-376      AC B1M9T9.1
#=GS T0I897_9SPHN/280-338      AC T0I897.1
#=GS E4PRS3_MARAH/282-340      AC E4PRS3.1
#=GS A0A0M3B189_9RHIZ/269-327  AC A0A0M3B189.1
#=GS N1MPQ4_9SPHN/282-340      AC N1MPQ4.1
#=GS Q0VMS5_ALCBS/298-360      AC Q0VMS5.1
#=GS A0A011NAJ9_9PROT/290-348  AC A0A011NAJ9.1
#=GS G4M375_9BURK/172-229      AC G4M375.1
#=GS S6HU25_9GAMM/321-376      AC S6HU25.1
#=GS E0R993_9ENTR/318-374      AC E0R993.1
#=GS A1WDS2_ACISJ/297-355      AC A1WDS2.1
#=GS A0A125NYC5_9BURK/291-349  AC A0A125NYC5.1
#=GS Q5NWB7_AROAE/289-347      AC Q5NWB7.1
#=GS I1YLS8_METFJ/281-339      AC I1YLS8.1
#=GS W7WYM1_9BURK/289-347      AC W7WYM1.1
#=GS A0A0L0MFB9_9BURK/322-378  AC A0A0L0MFB9.1
#=GS A0A068YQ66_9BURK/312-361  AC A0A068YQ66.1
#=GS U2A071_9PSED/291-349      AC U2A071.1
K7I2N4_CAEJA/654-710                 ...DPMKVRKPLVQVRVG....RREGVMLIGKTAEY-GLAWVKF-DNGDEEQLDVNKVKLVAVIDG......
G4T4H9_META2/291-349                 ...DSDKLKKAIVRVLHD....GRIARLVLSRRPTQDGYAWVKYDDDGNEFETDLGSVQLIAVLEG......
C7RVT8_ACCPU/288-346                 ...DPDRLRRAIVHVQHD....GRPARLILNRRPPVEGHAWLKYDDDGHELAADLAQVQLVALLEG......
A0A0Q6W203_9BURK/279-337             ..k-PTSWVNPVLAVRHD....GREGRLLIRRRPTAVGKAWLRYDDDCELAEVDLADVQLVALIEG......
L0WCE1_9GAMM/281-339                 ...DPDKLKKAIVMVKHD....ERMGRLMLNRRPSADGWAWIKYEDDGHEFEADLGTVELMAVMDG......
K7I2N5_CAEJA/654-710                 ...DPMKVRKPLVQVRVG....RREGVMLIGKTAEY-GLAWVKF-DNGDEEQLDVNKVKLVAVIDG......
B1M9T9_METRJ/318-376                 ...DPDSMKRPLLLVEHD....GRAAAVLLNRRPSSAGLIRIRYEDGGGDAEVDAGSVKINRLMEG......
T0I897_9SPHN/280-338                 ...DPDKLKKAIVTVEHD....GRPGRLILNRRPSREGASWMKYDDDGSEFEAELADVRLISVIEG......
E4PRS3_MARAH/282-340                 ...DPDKLKKAIIMVKHD....ERMGRLMLNRRPTAEGWAWIKYEDDGHEFEADLGTVELMALMDG......
A0A0M3B189_9RHIZ/269-327             ...DPDKLKKAIVQVEHD....ERPARLILNRRPPAEGYAWLKYEDDGQEFEANLADVKLVALIEG......
N1MPQ4_9SPHN/282-340                 ...DPLKLKKAIVQVSHN....KRPARLILNKRPSRDGVAWIKYEDSGEETEADLGKVQLLALLEG......
Q0VMS5_ALCBS/298-360                 ...DPTRISNPTLWVSWDmegeRYTGKVMLARRPSSTGMLWVEEQDTGRAFELVAADVTLEGLTE-s.....
A0A011NAJ9_9PROT/290-348             ...DPDSLRRAIVHVQHD....GRPARLILNRRPPVEGHAWLKYDDNGHELAAXLAQVQLVALLEG......
G4M375_9BURK/172-229                 ...DPDKLKKAILQVRHD....DRPARLILTKRPPAEGFAWLKY-DDGHEIEANLAEVQLVALVE-s.....
S6HU25_9GAMM/321-376                 aqg----IHDPLILVNYD....DKRASILLHKYPSVQGRIWIKF-DGGREMEVGSSVLQIISI---se....
E0R993_9ENTR/318-374                 ...-SDKIKKAIVQIQYD....ERPARLLTNRRASY-GFGWIKYDDDGSEDEVDLKDVSVVAIVEG......
A1WDS2_ACISJ/297-355                 ...DPDKLKKAIIQVKHD....DRPARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQLVALLEG......
A0A125NYC5_9BURK/291-349             ...DPDKLKKAIIQVKHD....DRPARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQLVALLEG......
Q5NWB7_AROAE/289-347                 ...DSDKLKKVIIQVKHN....GRPARLILNKRPPTEGWAWLKYEDDGMEFEADLIQVKLVALIEG......
I1YLS8_METFJ/281-339                 ...DPDKLKKAIVMVKHD....ERMGRLMLNRRPSADGWAWIKYEDDGHEFEADLGTVELMAVMDG......
W7WYM1_9BURK/289-347                 ...DPDKLKKAIIQVTHD....GRPARIVLNRRPAAEGLAWLKYEDDGHEFEAELSSVQLVALLEG......
A0A0L0MFB9_9BURK/322-378             ..k-PPKAKIAGIDVTHD....GRPARLLL-KVPSTHGLAWIKYEDDGHETEIEVGTIE-------qivsva
A0A068YQ66_9BURK/312-361             .ap--------VFLVAAD...dGRTGRLVVDRRAKRAGWARVFY-ATG-EEEVDATQLRIVRV---e.....
U2A071_9PSED/291-349                 ...DPDKLKKAIIQVKHD....DRPARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQLVALLEG......
#=GC seq_cons                        ...DPDKLKKAIlpVpHD....sRsARLlLNRRPss-GhAWlKY-DDGpEhEsDLusVpLlAllEG......
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