GenomeNet

Database: Pfam
Entry: KorB_C
LinkDB: KorB_C
Original site: KorB_C 
#=GF ID   KorB_C
#=GF AC   PF06613.6
#=GF DE   KorB C-terminal beta-barrel domain
#=GF AU   Bateman A
#=GF SE   Pfam-B_20369 (release 10.0)
#=GF GA   25.00 25.00;
#=GF TC   26.50 25.50;
#=GF NC   24.40 23.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   3430606
#=GF RT   Nucleotide sequence of korB, a replication control gene of broad
#=GF RT   host-range plasmid RK2. 
#=GF RA   Kornacki JA, Balderes PJ, Figurski DH; 
#=GF RL   J Mol Biol 1987;198:211-222.
#=GF DR   INTERPRO; IPR010575;
#=GF DR   SCOP; 1igq; fa;
#=GF CC   This family consists of several KorB transcriptional repressor
#=GF CC   proteins. The korB gene is a major regulatory element in the
#=GF CC   replication and maintenance of broad host-range plasmid RK2. It
#=GF CC   negatively controls the replication gene trfA, the host-lethal
#=GF CC   determinants kilA and kilB, and the korA-korB operon [1]. This
#=GF CC   beta-barrel domain is found at the C-terminus of KorB.
#=GF SQ   67
#=GS F0CAK2_9XANT/95-154   AC F0CAK2.1
#=GS G9CA63_DELAC/293-352  AC G9CA63.1
#=GS B5TTR2_9BACT/288-346  AC B5TTR2.1
#=GS Q8RSN4_9BACT/294-353  AC Q8RSN4.1
#=GS A6H989_9ZZZZ/299-358  AC A6H989.1
#=GS Q5NWB7_AROAE/288-347  AC Q5NWB7.1
#=GS B1M9T9_METRJ/317-376  AC B1M9T9.1
#=GS E4PRS3_MARAH/281-340  AC E4PRS3.1
#=GS Q2VLA3_BURCE/298-357  AC Q2VLA3.1
#=GS G9C9Y8_COMTE/290-349  AC G9C9Y8.1
#=GS Q937C5_PSESD/290-349  AC Q937C5.1
#=GS G9FB77_9BACT/289-348  AC G9FB77.1
#=GS G9FBJ0_9BACT/293-352  AC G9FBJ0.1
#=GS B0ZB65_9BURK/320-379  AC B0ZB65.1
#=GS F2Q6B4_9BACT/286-345  AC F2Q6B4.1
#=GS G9AJS9_9GAMM/376-433  AC G9AJS9.1
#=GS B2IAV0_XYLF2/284-343  AC B2IAV0.1
#=GS D0ZHJ8_EDWTE/347-405  AC D0ZHJ8.1
#=GS Q08L15_BORPT/290-349  AC Q08L15.1
#=GS Q7X3C5_9BACT/290-349  AC Q7X3C5.1
#=GS H7EGG4_SALHO/290-349  AC H7EGG4.1
#=GS Q3RCA6_XYLFA/284-343  AC Q3RCA6.1
#=GS Q0VMS5_ALCBS/297-360  AC Q0VMS5.1
#=GS G9C9R5_DELAC/296-355  AC G9C9R5.1
#=GS Q4AC65_9SPHN/296-355  AC Q4AC65.1
#=GS Q5GR93_ALCXX/294-353  AC Q5GR93.1
#=GS Q91US9_9ZZZZ/307-366  AC Q91US9.1
#=GS D5K9J0_NEIGO/245-305  AC D5K9J0.1
#=GS E3HXU3_ACHXA/293-352  AC E3HXU3.1
#=GS Q3R4R0_XYLFA/284-343  AC Q3R4R0.1
#=GS Q0E677_PSEAI/299-358  AC Q0E677.1
#=GS E8SRY5_NEIGO/245-305  AC E8SRY5.1
#=GS G9C9I1_COMTE/293-352  AC G9C9I1.1
#=GS A1WDS2_ACISJ/296-355  AC A1WDS2.1
#=GS C5NNC6_PASPI/273-332  AC C5NNC6.1
#=GS F3QNX7_9BURK/326-381  AC F3QNX7.1
#=GS Q91UV7_9ZZZZ/318-377  AC Q91UV7.1
#=GS Q6QHR3_ALCDE/298-357  AC Q6QHR3.1
#=GS E8U2P7_ALIDB/290-349  AC E8U2P7.1
#=GS Q4LCB9_9ZZZZ/290-349  AC Q4LCB9.1
#=GS G4M375_9BURK/171-229  AC G4M375.1
#=GS F7ND74_XYLFA/284-343  AC F7ND74.1
#=GS Q0VUS0_9ZZZZ/288-347  AC Q0VUS0.1
#=GS F3QMJ4_9BURK/351-406  AC F3QMJ4.1
#=GS Q1H9Z8_9ZZZZ/286-345  AC Q1H9Z8.1
#=GS D4N5L6_9BACT/298-357  AC D4N5L6.1
#=GS Q76LZ4_DELAC/290-349  AC Q76LZ4.1
#=GS Q5ZHC9_9BACT/299-358  AC Q5ZHC9.1
#=GS E0R993_9ENTR/316-374  AC E0R993.1
#=GS H2EQ12_9BACT/288-347  AC H2EQ12.1
#=GS C7RVT8_ACCPU/287-346  AC C7RVT8.1
#=GS G4T4H9_META2/290-349  AC G4T4H9.1
#=GS D1EBV9_NEIGO/245-305  AC D1EBV9.1
#=GS Q6UPB6_CUPPJ/290-349  AC Q6UPB6.1
#=GS Q5W3F7_9ZZZZ/290-349  AC Q5W3F7.1
#=GS B5TTK9_9BACT/287-345  AC B5TTK9.1
#=GS B5TTF5_9BACT/287-345  AC B5TTF5.1
#=GS Q68E86_AERPU/395-452  AC Q68E86.1
#=GS Q0B127_BURCM/290-349  AC Q0B127.1
#=GS F2FB21_9ZZZZ/286-345  AC F2FB21.1
#=GS D4T0J4_9XANT/314-373  AC D4T0J4.1
#=GS F3J701_PSEAP/284-343  AC F3J701.1
#=GS A7K7G3_COMTE/293-352  AC A7K7G3.1
#=GS KORB1_ECOLX/290-349   AC Q52313.2
#=GS A7FC88_YERP3/291-350  AC A7FC88.1
#=GS Q209P0_AERHY/395-452  AC Q209P0.1
#=GS KORB2_ECOLX/299-358   AC P07674.1
#=GS KORB2_ECOLX/299-358   DR PDB; 1IGQ B; 302-358;
#=GS KORB2_ECOLX/299-358   DR PDB; 1IGQ C; 302-358;
#=GS KORB2_ECOLX/299-358   DR PDB; 1IGU A; 300-358;
#=GS KORB2_ECOLX/299-358   DR PDB; 1IGQ D; 300-358;
#=GS KORB2_ECOLX/299-358   DR PDB; 1IGU B; 299-358;
#=GS KORB2_ECOLX/299-358   DR PDB; 1IGQ A; 305-358;
F0CAK2_9XANT/95-154              ....SDPDRMSKPLLLVEFD...GR.SAAVLLNRRPTTAGLIHIGFEDGGGDQEVEAGACK.INLLAEA.
G9CA63_DELAC/293-352             ....PDPDKLKKAIIQVTHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGKVQ.LVALLEG.
B5TTR2_9BACT/288-346             ...e-DPDKIKKPLLVVIHD...GR.QANLMLNKKPTSLGFAWIKYED-GTEVSVDCSSLE.IEYLQEA.
Q8RSN4_9BACT/294-353             ....PDPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGHEFEADLSSVQ.LVALLEG.
A6H989_9ZZZZ/299-358             ....PDPDKLKKAIVQVEHD...ER.PARLILNRRPPAEGYAWLKYEDDGQEFEANLADVK.LVALIEG.
Q5NWB7_AROAE/288-347             ....ADSDKLKKVIIQVKHN...GR.PARLILNKRPPTEGWAWLKYEDDGMEFEADLIQVK.LVALIEG.
B1M9T9_METRJ/317-376             ....SDPDSMKRPLLLVEHD...GR.AAAVLLNRRPSSAGLIRIRYEDGGGDAEVDAGSVK.INRLMEG.
E4PRS3_MARAH/281-340             ...q-DPDKLKKAIIMVKHD...ER.MGRLMLNRRPTAEGWAWIKYEDDGHEFEADLGTVE.LMALMDG.
Q2VLA3_BURCE/298-357             ....PDPDKLKKAIVQVQHN...ER.PARLILNRRPPAEGFAWLKYEDDGQEFEANLSSVT.LVALLEG.
G9C9Y8_COMTE/290-349             ....ADPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
Q937C5_PSESD/290-349             ....ADPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
G9FB77_9BACT/289-348             ...q-DPDKLKKAIVQVEHD...GR.PARIILNRRPPAEGFAWLKYEDDGQEFEANLAQVK.LVALLEG.
G9FBJ0_9BACT/293-352             ....PDPDKLKKAIIQVTHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGKVQ.LVALLEG.
B0ZB65_9BURK/320-379             ....SDPDRMSKPLLLVEFD...GR.SAAVLLNRRPTTAGLIHIRFEDGGGDQEVDAGACK.INLLTEA.
F2Q6B4_9BACT/286-345             ...d-DPDKIKKAIVLVKHD...DR.MARLLTNRRPPAEGWAWLKYEDDGHEVEADLGNVQ.LMALMEG.
G9AJS9_9GAMM/376-433             .qqg----KIKKPIIQVRYD...ER.PARLLSSRR-AAYGLGWLKYDDDGEEIEVDLNQVQ.LVAVIEG.
B2IAV0_XYLF2/284-343             ....ADSNKLKKAIVQVEYY...GR.PARLVLTKRASEVGRAWLKYEDDGNEFEASIKEVN.LVAIVEG.
D0ZHJ8_EDWTE/347-405             .eka---DRIKKAIIQVKHD...ER.EARLLTERR-AAYGLAWIKYDDDGQEVEVDLNQVA.LVAVIEA.
Q08L15_BORPT/290-349             ....PDPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
Q7X3C5_9BACT/290-349             ....ADPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
H7EGG4_SALHO/290-349             ....ADPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
Q3RCA6_XYLFA/284-343             ....ADSNKLKKAIVQVEYY...GR.PARLVLTKRASEVGRAWLKYEDDGNEFEASIKEVN.LVAIVEG.
Q0VMS5_ALCBS/297-360             ....PDPTRISNPTLWVSWDmegERyTGKVMLARRPSSTGMLWVEEQDTGRAFELVAADVT.LEGLTE-s
G9C9R5_DELAC/296-355             ....PDPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
Q4AC65_9SPHN/296-355             ....PDPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
Q5GR93_ALCXX/294-353             ....PDPDKLKKAIIQVTHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGKVQ.LVALLEG.
Q91US9_9ZZZZ/307-366             ....SDPDSMKKPLLIVEHD...GR.AAAVLLNRRPSTAGLIRIRYEDGGGDAEVDAGSLK.INLLTEA.
D5K9J0_NEIGO/245-305             ...e-DPDKLKKAIVQVMYQ...GQ.LARLVLNKRGLSGDEVWIKFEESGETESVPCKEISgIVAVIEG.
E3HXU3_ACHXA/293-352             ....PDPDKLKKAIIQVTHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGKVQ.LVALLEG.
Q3R4R0_XYLFA/284-343             ....ADSNKLKKAIVQVEYY...GR.PARLVLTKRASEVGRAWLKYEDDGNEFEASIKEVN.LVAIVEG.
Q0E677_PSEAI/299-358             ....PDPDKLKKAIVQVEHD...ER.PARLILNRRPPAEGYAWLKYEDDGQEFEANLADVK.LVALIEG.
E8SRY5_NEIGO/245-305             ...e-DPDKLKKAIVQVMYQ...GQ.LARLVLNKRGLSGDEVWIKFEESGETESVPCKEISgIVAVIEG.
G9C9I1_COMTE/293-352             ....PDPDKLKKAIIQVTHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGKVQ.LVALLEG.
A1WDS2_ACISJ/296-355             ....PDPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
C5NNC6_PASPI/273-332             ...v-DPNKLKKAIVMVVHD...SR.SARLVLDRRPSSDGMAWLKYEDDGHEFETDLGDVQ.LMSLIEG.
F3QNX7_9BURK/326-381             eqly------KKPIIFCLVD...GR.ECELLYK-RKASDGIVCVKFED-GSEQEVIAEEVQ.LNRICE-s
Q91UV7_9ZZZZ/318-377             ....SDPDRMSKPLLLVEFD...GR.SAAVLLNRRPTTAGLIHIRFEDGGGDQEVEAGACK.INLLTEA.
Q6QHR3_ALCDE/298-357             ....PDPDKLKKAIVQVQHN...ER.PARLILNRRPPAEGFAWLKYEDDGQEFEANLSSVT.LVALLEG.
E8U2P7_ALIDB/290-349             ....ADPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
Q4LCB9_9ZZZZ/290-349             ....ADPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
G4M375_9BURK/171-229             ....PDPDKLKKAILQVRHD...DR.PARLILTKRPPAEGFAWLKY-DDGHEIEANLAEVQ.LVALVE-s
F7ND74_XYLFA/284-343             ....ADSNKLKKAIVQVEYY...GR.PARLVLTKRASEVGRAWLKYEDDGNEFEASIKEVN.LVAIVEG.
Q0VUS0_9ZZZZ/288-347             ...q-DPDKLKKAIVQVEHD...GR.PARLILNRRPPAEGYAWLKYEDDGQEFEADLAKVQ.LVALLEG.
F3QMJ4_9BURK/351-406             eqly------KKPIIFCLVD...GR.ECELLYK-RKASDGIVCVKFED-GSEQEVIAEKVQ.LNRICE-s
Q1H9Z8_9ZZZZ/286-345             ...n-DPTKLKKAIVQVEHN...GR.LARLMMNKRPSESGSAWLKYEDDGEEFETVLCDVT.LVQLLEG.
D4N5L6_9BACT/298-357             ....PDPDKLKKAIVQVQHN...ER.PARLILNRRPPAEGFAWLKYEDDGQEFEANLSSVT.LVALLEG.
Q76LZ4_DELAC/290-349             ....ADPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
Q5ZHC9_9BACT/299-358             ....PDPDKLKKAIVQVEHD...ER.PARLILNRRPPAEGYAWLKYEDDGQEFEANLADVK.LVALIEG.
E0R993_9ENTR/316-374             .evs---DKIKKAIVQIQYD...ER.PARLLTNRRAS-YGFGWIKYDDDGSEDEVDLKDVS.VVAIVEG.
H2EQ12_9BACT/288-347             ...q-DPDKLKKAIVQVEHD...GR.PARLILNRRPPAEGYAWLKYEDDGQEFEADLAKVQ.LVALLEG.
C7RVT8_ACCPU/287-346             ....ADPDRLRRAIVHVQHD...GR.PARLILNRRPPVEGHAWLKYDDDGHELAADLAQVQ.LVALLEG.
G4T4H9_META2/290-349             ...n-DSDKLKKAIVRVLHD...GR.IARLVLSRRPTQDGYAWVKYDDDGNEFETDLGSVQ.LIAVLEG.
D1EBV9_NEIGO/245-305             ...e-DPDKLKKAIVQVMYQ...GQ.LARLVLNKRGLSGDEVWIKFEESGETESVPCKEISgIVAVIEG.
Q6UPB6_CUPPJ/290-349             ....ADPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
Q5W3F7_9ZZZZ/290-349             ....ADPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
B5TTK9_9BACT/287-345             ...e-DPDKIKKPLLVVIHD...GR.QANLMLNKKPSSLGFAWIKYED-GTEVSVDCSSLE.IEYLQEA.
B5TTF5_9BACT/287-345             ...e-DPDKIKKPLLVVIHD...GR.QANLMLNKKPSSLGFAWIKYED-GTEVSVDCSSLE.IEYLQEA.
Q68E86_AERPU/395-452             .qqg----KIKKPIIQVRYD...ER.PARLLSSRR-AAYGLGWLKYDDDGEEIEVDLNQVQ.LVAVIEG.
Q0B127_BURCM/290-349             ....ADPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
F2FB21_9ZZZZ/286-345             ...d-DPDKIKKAIVLVKHD...DR.MARLLTNRRPPAEGWAWLKYEDDGHEVEADLGNVQ.LMALMEG.
D4T0J4_9XANT/314-373             ....SDPDSMKRPLLLVEHD...GR.AAAVLLNRRPSTAGLIRIRYEDGGGDAEVDAGSLK.INRLMEG.
F3J701_PSEAP/284-343             ...d-DPTKIKKAIVQVEIN...NE.LCRVLLTKRPSETGLGWFKNEVSGEEFEADLATAK.MVALVEG.
A7K7G3_COMTE/293-352             ....PDPDKLKKAIIQVTHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGKVQ.LVALLEG.
KORB1_ECOLX/290-349              ....ADPDKLKKAIIQVKHD...DR.PARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQ.LVALLEG.
A7FC88_YERP3/291-350             ...e-DKSKLKKSFVEVIVD...ER.AARIMLDRRPSLKGLAWFKCEDNGEEFEAELSSVT.LVAIIEG.
Q209P0_AERHY/395-452             .qqg----KIKKPIIQVRYD...ER.PARLLSSRR-AAYGLGWLKYDDDGEEIEVDLNQVQ.LVAVIEG.
KORB2_ECOLX/299-358              ....PDPDKLKKAIVQVEHD...ER.PARLILNRRPPAEGYAWLKYEDDGQEFEANLADVK.LVALIEG.
#=GR KORB2_ECOLX/299-358   SS    ....XXTTBXSSEEEEEEET...TE.EEEE-TTB--SSTTEEEEEETTT--EEEEEGGG-E.EEEEEE-.
#=GC SS_cons                     ....XXTTBXSSEEEEEEET...TE.EEEE-TTB--SSTTEEEEEETTT--EEEEEGGG-E.EEEEEE-.
#=GC seq_cons                    ....sDPDKLKKAIlQVcHD...sR.PARLlLNRRPsu-GaAWLKYEDDGpEFEADLusVp.LVALlEG.
//
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