GenomeNet

Database: Pfam
Entry: KorB_C
LinkDB: KorB_C
Original site: KorB_C 
#=GF ID   KorB_C
#=GF AC   PF06613.9
#=GF DE   KorB C-terminal beta-barrel domain
#=GF AU   Bateman A
#=GF SE   Pfam-B_20369 (release 10.0)
#=GF GA   25.00 25.00;
#=GF TC   27.60 26.70;
#=GF NC   24.30 22.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   3430606
#=GF RT   Nucleotide sequence of korB, a replication control gene of broad
#=GF RT   host-range plasmid RK2. 
#=GF RA   Kornacki JA, Balderes PJ, Figurski DH; 
#=GF RL   J Mol Biol 1987;198:211-222.
#=GF DR   INTERPRO; IPR010575;
#=GF DR   SCOP; 1igq; fa;
#=GF CC   This family consists of several KorB transcriptional repressor
#=GF CC   proteins. The korB gene is a major regulatory element in the
#=GF CC   replication and maintenance of broad host-range plasmid RK2. It
#=GF CC   negatively controls the replication gene trfA, the host-lethal
#=GF CC   determinants kilA and kilB, and the korA-korB operon [1]. This
#=GF CC   beta-barrel domain is found at the C-terminus of KorB.
#=GF SQ   15
#=GS G4M375_9BURK/172-229      AC G4M375.1
#=GS K7I2N4_CAEJA/654-710      AC K7I2N4.1
#=GS G4T4H9_META2/291-349      AC G4T4H9.1
#=GS C7RVT8_ACCPU/288-346      AC C7RVT8.1
#=GS E3HXU3_ACHXA/294-352      AC E3HXU3.1
#=GS K7I2N5_CAEJA/654-710      AC K7I2N5.1
#=GS E0R993_9ENTR/318-374      AC E0R993.1
#=GS A1WDS2_ACISJ/297-355      AC A1WDS2.1
#=GS B1M9T9_METRJ/318-376      AC B1M9T9.1
#=GS E4PRS3_MARAH/282-340      AC E4PRS3.1
#=GS Q5NWB7_AROAE/289-347      AC Q5NWB7.1
#=GS I1YLS8_METFJ/281-339      AC I1YLS8.1
#=GS A0A0M3B189_9RHIZ/269-327  AC A0A0M3B189.1
#=GS A0A068YQ66_9BURK/312-361  AC A0A068YQ66.1
#=GS Q0VMS5_ALCBS/298-360      AC Q0VMS5.1
G4M375_9BURK/172-229                 ..DPDKLKKAILQVRHD....DRPARLILTKRPPAEGFAWLKY-DDGHEIEANLAEVQLVALVE-s
K7I2N4_CAEJA/654-710                 ..DPMKVRKPLVQVRVG....RREGVMLIGKTAEY-GLAWVKF-DNGDEEQLDVNKVKLVAVIDG.
G4T4H9_META2/291-349                 ..DSDKLKKAIVRVLHD....GRIARLVLSRRPTQDGYAWVKYDDDGNEFETDLGSVQLIAVLEG.
C7RVT8_ACCPU/288-346                 ..DPDRLRRAIVHVQHD....GRPARLILNRRPPVEGHAWLKYDDDGHELAADLAQVQLVALLEG.
E3HXU3_ACHXA/294-352                 ..DPDKLKKAIIQVTHD....DRPARLILNRRPPAEGWAWLKYEDDGQEFEADLGKVQLVALLEG.
K7I2N5_CAEJA/654-710                 ..DPMKVRKPLVQVRVG....RREGVMLIGKTAEY-GLAWVKF-DNGDEEQLDVNKVKLVAVIDG.
E0R993_9ENTR/318-374                 ..-SDKIKKAIVQIQYD....ERPARLLTNRRASY-GFGWIKYDDDGSEDEVDLKDVSVVAIVEG.
A1WDS2_ACISJ/297-355                 ..DPDKLKKAIIQVKHD....DRPARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQLVALLEG.
B1M9T9_METRJ/318-376                 ..DPDSMKRPLLLVEHD....GRAAAVLLNRRPSSAGLIRIRYEDGGGDAEVDAGSVKINRLMEG.
E4PRS3_MARAH/282-340                 ..DPDKLKKAIIMVKHD....ERMGRLMLNRRPTAEGWAWIKYEDDGHEFEADLGTVELMALMDG.
Q5NWB7_AROAE/289-347                 ..DSDKLKKVIIQVKHN....GRPARLILNKRPPTEGWAWLKYEDDGMEFEADLIQVKLVALIEG.
I1YLS8_METFJ/281-339                 ..DPDKLKKAIVMVKHD....ERMGRLMLNRRPSADGWAWIKYEDDGHEFEADLGTVELMAVMDG.
A0A0M3B189_9RHIZ/269-327             ..DPDKLKKAIVQVEHD....ERPARLILNRRPPAEGYAWLKYEDDGQEFEANLADVKLVALIEG.
A0A068YQ66_9BURK/312-361             ap--------VFLVAAD...dGRTGRLVVDRRAKRAGWARVFY-ATG-EEEVDATQLRIVRV---e
Q0VMS5_ALCBS/298-360                 ..DPTRISNPTLWVSWDmegeRYTGKVMLARRPSSTGMLWVEEQDTGRAFELVAADVTLEGLTE-s
#=GC seq_cons                        ..DPDKLKKAIlpVcHD....cRsARLlLNRRPss-GaAWlKY-DDGpEhEsDLupVpLVALlEG.
//
DBGET integrated database retrieval system