GenomeNet

Database: Pfam
Entry: KorB_C
LinkDB: KorB_C
Original site: KorB_C 
#=GF ID   KorB_C
#=GF AC   PF06613.8
#=GF DE   KorB C-terminal beta-barrel domain
#=GF AU   Bateman A
#=GF SE   Pfam-B_20369 (release 10.0)
#=GF GA   25.00 25.00;
#=GF TC   79.30 78.40;
#=GF NC   24.30 22.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   3430606
#=GF RT   Nucleotide sequence of korB, a replication control gene of broad
#=GF RT   host-range plasmid RK2. 
#=GF RA   Kornacki JA, Balderes PJ, Figurski DH; 
#=GF RL   J Mol Biol 1987;198:211-222.
#=GF DR   INTERPRO; IPR010575;
#=GF DR   SCOP; 1igq; fa;
#=GF CC   This family consists of several KorB transcriptional repressor
#=GF CC   proteins. The korB gene is a major regulatory element in the
#=GF CC   replication and maintenance of broad host-range plasmid RK2. It
#=GF CC   negatively controls the replication gene trfA, the host-lethal
#=GF CC   determinants kilA and kilB, and the korA-korB operon [1]. This
#=GF CC   beta-barrel domain is found at the C-terminus of KorB.
#=GF SQ   11
#=GS K7I2N4_CAEJA/654-710  AC K7I2N4.1
#=GS G4T4H9_META2/291-349  AC G4T4H9.1
#=GS C7RVT8_ACCPU/288-346  AC C7RVT8.1
#=GS E3HXU3_ACHXA/294-352  AC E3HXU3.1
#=GS K7I2N5_CAEJA/654-710  AC K7I2N5.1
#=GS E0R993_9ENTR/318-374  AC E0R993.1
#=GS A1WDS2_ACISJ/297-355  AC A1WDS2.1
#=GS B1M9T9_METRJ/318-376  AC B1M9T9.1
#=GS Q5NWB7_AROAE/289-347  AC Q5NWB7.1
#=GS I1YLS8_METFJ/281-339  AC I1YLS8.1
#=GS Q0VMS5_ALCBS/298-360  AC Q0VMS5.1
K7I2N4_CAEJA/654-710             DPMKVRKPLVQVRVG....RREGVMLIGKTAEY-GLAWVKF-DNGDEEQLDVNKVKLVAVIDG.
G4T4H9_META2/291-349             DSDKLKKAIVRVLHD....GRIARLVLSRRPTQDGYAWVKYDDDGNEFETDLGSVQLIAVLEG.
C7RVT8_ACCPU/288-346             DPDRLRRAIVHVQHD....GRPARLILNRRPPVEGHAWLKYDDDGHELAADLAQVQLVALLEG.
E3HXU3_ACHXA/294-352             DPDKLKKAIIQVTHD....DRPARLILNRRPPAEGWAWLKYEDDGQEFEADLGKVQLVALLEG.
K7I2N5_CAEJA/654-710             DPMKVRKPLVQVRVG....RREGVMLIGKTAEY-GLAWVKF-DNGDEEQLDVNKVKLVAVIDG.
E0R993_9ENTR/318-374             -SDKIKKAIVQIQYD....ERPARLLTNRRASY-GFGWIKYDDDGSEDEVDLKDVSVVAIVEG.
A1WDS2_ACISJ/297-355             DPDKLKKAIIQVKHD....DRPARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQLVALLEG.
B1M9T9_METRJ/318-376             DPDSMKRPLLLVEHD....GRAAAVLLNRRPSSAGLIRIRYEDGGGDAEVDAGSVKINRLMEG.
Q5NWB7_AROAE/289-347             DSDKLKKVIIQVKHN....GRPARLILNKRPPTEGWAWLKYEDDGMEFEADLIQVKLVALIEG.
I1YLS8_METFJ/281-339             DPDKLKKAIVMVKHD....ERMGRLMLNRRPSADGWAWIKYEDDGHEFEADLGTVELMAVMDG.
Q0VMS5_ALCBS/298-360             DPTRISNPTLWVSWDmegeRYTGKVMLARRPSSTGMLWVEEQDTGRAFELVAADVTLEGLTE-s
#=GC seq_cons                    DPDKlKKsIlpVpHD....cRsARLlLNRRPsspGaAWlKY-DDGpEhEsDLupVpLVAllEG.
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