GenomeNet

Database: Pfam
Entry: Lenti_VIF_2
LinkDB: Lenti_VIF_2
Original site: Lenti_VIF_2 
#=GF ID   Lenti_VIF_2
#=GF AC   PF07401.7
#=GF DE   Bovine Lentivirus VIF protein
#=GF AU   Moxon SJ
#=GF SE   Pfam-B_21067 (release 10.0)
#=GF GA   22.00 22.00;
#=GF TC   22.60 23.20;
#=GF NC   21.90 21.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   9440006
#=GF RT   Sequence data analysis reveals a relationship between LSR2, the
#=GF RT   recombinant fusion protein mimicing M.Leprae and VIF of bovine
#=GF RT   immunodeficiency virus (BIV). 
#=GF RA   Ramakrishnan S, Sukhaswami MB, Patil KM, Eswaran C; 
#=GF RL   J Biomol Struct Dyn 1997;15:605-609.
#=GF DR   INTERPRO; IPR009979;
#=GF CC   This family consists of several Lentivirus viral infectivity
#=GF CC   factor (VIF) proteins. VIF is known to be essential for ability
#=GF CC   of cell-free virus preparation to infect cells [1]. Members of
#=GF CC   this family are specific to  Bovine immunodeficiency virus (BIV)
#=GF CC   and Jembrana disease virus which also infects cattle.
#=GF SQ   22
#=GS Q7ZSJ8_9RETR/96-215   AC Q7ZSJ8.1
#=GS Q6H1V4_CAEV/67-215    AC Q6H1V4.1
#=GS VIF_BIV29/1-198       AC P19563.1
#=GS Q8J4V0_9RETR/98-213   AC Q8J4V0.1
#=GS Q9DKV7_CAEV/56-209    AC Q9DKV7.1
#=GS F6LY18_CAEV/108-212   AC F6LY18.1
#=GS C9DI72_CAEV/62-209    AC C9DI72.1
#=GS Q86552_9RETR/112-210  AC Q86552.1
#=GS Q7LZ04_9RETR/109-207  AC Q7LZ04.1
#=GS VIF_VILV2/93-210      AC P69716.1
#=GS VIF_JEMBR/1-197       AC Q82852.1
#=GS C0JIH0_CAEV/65-219    AC C0JIH0.1
#=GS VIF_CAEVC/94-215      AC P33462.1
#=GS VIF_VILV/93-210       AC P69715.1
#=GS Q56N28_CAEV/94-213    AC Q56N28.1
#=GS VIF_OMVVS/95-212      AC P16902.1
#=GS F6LY12_CAEV/103-212   AC F6LY12.1
#=GS E0ZN13_CAEV/63-213    AC E0ZN13.1
#=GS VIF_VILV1/90-212      AC P23430.1
#=GS VIF_VILVK/93-210      AC P69717.1
#=GS A7WZV1_JEMBR/1-197    AC A7WZV1.1
#=GS Q7LYZ4_9RETR/90-192   AC Q7LYZ4.1
Q7ZSJ8_9RETR/96-215              ................................nawqyksrgewktlgvwyetpgdyrkkekqfw---------------------------------------------------------------------------------------------------------FH....WRVALCSCRKTKWdiREFMIGKHR-WDLCKSCMQGEIVRHTEPKSLQRLALLQITRDHIFQVMPLWRARRVT---------------------vqrfpwcrdptgytl.....
Q6H1V4_CAEV/67-215               .gyeywetsnqewkmelrrdlevinqinfrntwqyksrgewktigiwyetpgdykrkekqfwfh----------------------------------------------------------------------------------------------------------W...rVALCSCKKERWDI..REFILGRHR-WDLCKSCIQGEIVRNTEIKSLQRLVLLHLVRNHVFQIMPLWRARRVT---------------------vtkfpwcrdptgytl.....
VIF_BIV29/1-198                  ................................................................MERTLQSVVGRRRGSSNRGRGKNSLISTPSYALHPPPRFRYPRWEFVRQTEYSMTACVRKGKLVLTYQYAIWKRVWTIETGFTDPSLFMTPAGTHTTEEIGHLDLFW....LRYCSCPHEMPPW..LDFLRGTLNLRISCRRALQASVLTSTPRHSLQRLAALQLCTNACLCWYPLGRINDTTPLWLNFSSGKEPTIQQLSGHP....................
Q8J4V0_9RETR/98-213              ..................................wqyksrgewktigqwyetpgqykerekefw---------------------------------------------------------------------------------------------------------FH....WRVALCSCRKTHWdiREFMVGKHR-WDLCKSCIQGEIVRYTEPKSLQRLALLHIARNHIFQAMPLWRARRV----------------------tverfpwcrdptgy......
Q9DKV7_CAEV/56-209               ........................ltyvrenaqyeewemtsyewrirmrrdktkshprghtspw--------------------------------------------------------------------------QYRRQDGWKDVGTWFLQPGDYRKADQQFWFAWR....IVSCSCKKEGFNI..REFMLGTHR-WDLCKSCCQGEVVKRTQPYTLQRLTWLKLTEDHVFQVMPLWR--------------------------arkgitidfpwcrdtkg...
F6LY18_CAEV/108-212              ..............................................vwflqpgnykevdryfwm---------------------------------------------------------------------------------------------------------MW...rIAICSCVKKKFEI..RDLLLGNHR-WDLCKSCFQGEIIRSTPPRTLQRLVLLRLARGHVFQKMPLSRARQGTTL-------------------dfpwcrdttgyle.......
C9DI72_CAEV/62-209               ................................edrtyeywkigrepwvmklrrrkgelrrglav----------------------------------------------------------------------VW--QYQCQGNWEDVGKWFTDTGNYRHVD-NKFWFHW...rVAMCSCHKGGFQV..RDFLLGGHR-WDLCKSCIQGEIVRTTDANSLQRWSLLQLARNHPFVVMPLWRAR------------------------rvptqdfpwcrnptg.....
Q86552_9RETR/112-210             ..............................................kevygyetpgeykererq---------------------------------------------------------------------------------------------------------FWfhwrVAICSCKKEKWDI..REFLIGRHR-WDLCKSCIQGEIVKHTEKKSLQRLALLHIADNLVFQGMPLWR--------------------------arrvpvqrfpw.........
Q7LZ04_9RETR/109-207             ..............................................kevygyetpgeykererq---------------------------------------------------------------------------------------------------------FWfhwrVAICSCKKEKWDI..REFLIGRHR-WDLCKSCIQGEIVKHTEKKSLQRLALLHIADNLVFQGMPLWR--------------------------arrvpvqrfpw.........
VIF_VILV2/93-210                 .............................nfrnawqyksqgewktigvwyespgdykgkenqfw--------------------------------------------------------------------------------------------------------FHW...rIALCSCNKTRWDI..REFMIGKHR-WDLCKSCIQGEIVKNTNPRSLQRLALLHLAKDHVFQVMPLWRARRV----------------------tvqkfpwcrsp.........
VIF_JEMBR/1-197                  ................................................................MERTIQSPMGRRRGSSGRRKRNANIISPPAYAIYPAPQYRYPRWEFVMNDLYSQTARLQKEEIIITYRYAVWAREWKIQTGFLDLGYLMTPAGTHTTGELNELDLFW....VRYTLCQHRSPKW..RELLLGEMT-HTSCRRTAQAAVVSHTKPHTLQRLAGLTLVCNQNLCWYPVGTVTRNSPLWMHFTTGKEPTIQQLSGHP....................
C0JIH0_CAEV/65-219               ........................yehweinswewkmklrrvkqwidprgtgtpwqykvgkdwk-----------------------------------------------------------------------------------SIGVWFLQAGDYTKVDRHFWWAWR....IVICSCRKEKFDI..REFLMGKHR-WDLCKSCAQGEVIRHTRPKSLERLAWLQLVDTHTFQVLPLWRARRGSTI-------------------dfpwcrdttgfvqawtiqdc
VIF_CAEVC/94-215                 .............................pwqykvggtwksigvwflqagdyrkvdrhfwwawr-----------------------------------------------------------------------------------------------------------....ILICSCRKEKFDI..REFMRGRHR-WDLCKSCAQGEVVKHTRTKSLERLVLLQMVEQHVFQVLPLWRARRSST--------------------tdfpwcrdttgythaws...
VIF_VILV/93-210                  .............................nfrnawqyksqgewktigvwyespgdykgkenqfw--------------------------------------------------------------------------------------------------------FHW...rIALCSCNKTRWDI..REFMIGKHR-WDLCKSCIQGEIVKNTNPRSLQRLALLHLAKDHVFQVMPLWRARRV----------------------tvqkfpwcrsp.........
Q56N28_CAEV/94-213               ...............................pwqykvagtwknigvwflqagdykkvdrhfwwa---------------------------------------------------------------------------------------------------------WR....IMLCSCRKERFDI..REFLRGRHR-WDLCKSCAQGEVVKHTRTKSLERLVLLQMVEQHVFQVLPLWRARRGN---------------------tidfpwcrdttgytha....
VIF_OMVVS/95-212                 .............................rnawqyksqekwniigiwydspgeyrdkekqfwfh----------------------------------------------------------------------------------------------------------W...rIAMCSCKKERWDI..RDFMVGKHR-WDLCKSCIQGEIVRHTEPRSLQRLALLHIVRNHVFQIMPLWRARRVT---------------------vqrfpwsgtegl........
F6LY12_CAEV/103-212              ......................................wksvgtwflqpgnykdvdrqfwfawr-----------------------------------------------------------------------------------------------------------....IAICSCKKDRFDI..RDFMRGRHR-WDLCKSCIQGEIIRSTPAKTLQRLAFLRLVKDHRFQVMPLSRARRGTTV-------------------dfpwcrdttgyle.......
E0ZN13_CAEV/63-213               keyenweitswewkmhlrrvkhriqengrgnpwqykvagtwksigvwflqagdykkvdqhfwwa---------------------------------------------------------------------------------------------------------WR....ILMCSCRKERFNI..KEFLRGGHR-WDLCKSCAQGEIIKHTRPRSLERLVLLHIVEHHVFQVLPLWRARRSSTI-------------------dfpwcrdtsgytha......
VIF_VILV1/90-212                 ..........................aqinfrnawqyksqgewktigvwyespgdykgkenqfw--------------------------------------------------------------------------------------------------------FHW...rIALCSCNKTGWDI..REFMIGKHR-WDLCKSCIQGEIVKNTNPRSLQRLALLHLAKDHVFQVMPLWRARRVT---------------------vqkfswcrspmg........
VIF_VILVK/93-210                 .............................nfrnawqyksqgewktigvwyespgdykgkenqfw--------------------------------------------------------------------------------------------------------FHW...rIALCSCNKTRWDI..REFMIGKHR-WDLCKSCIQGEIVKNTNPRSLQRLALLHLAKDHVFQVMPLWRARRV----------------------tvqkfpwcrsp.........
A7WZV1_JEMBR/1-197               ................................................................MERTIQSPMGRRRGSSGRRKRNANIISPPAYAIYPAPQYRYPRWEFVMNDLYSQTARLQKEEIIITYRYAVWAREWKIQTGFLNLGYLMTPAGTHTTGELNELDLFW....VRYTLCQHRSPKW..RELLLGEMT-HTSCRRTAQAAVVSHTKPHTLQRLAGLTLVCNQNLCWYPVGTVTRNSPLWMHFTTGKEPTIQQLSGHP....................
Q7LYZ4_9RETR/90-192              ...............................................qwyrspgeykerekefw---------------------------------------------------------------------------------------------------------FH....WRIALCSCRKTHWdiKDFMVGKYR-WDLCKSCIQGEIVRYTEPKSLQRLALLHIAKNHVFQVMPLWRAR------------------------ripvqrfpwcrdptgy....
#=GC seq_cons                    ...................................t.t.p...hhhh.hhtt.t.hctcch.ah.........................................................................................................aa....ltlCSCpKc+acI..REFhlG+HR.WDLCKSChQGEIV+pTcP+SLQRLALL+lscsHVFQlMPLWRARRs......................sh.h.h.ppsh.........
//
DBGET integrated database retrieval system