GenomeNet

Database: Pfam
Entry: Lysis_col
LinkDB: Lysis_col
Original site: Lysis_col 
#=GF ID   Lysis_col
#=GF AC   PF02402.11
#=GF DE   Lysis protein
#=GF AU   Mian N, Bateman A
#=GF SE   Pfam-B_1555 (release 5.4)
#=GF GA   25.00 25.00;
#=GF TC   57.10 57.00;
#=GF NC   22.10 21.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   3323826
#=GF RT   Nucleotide sequences from the colicin E8 operon: homology with
#=GF RT   plasmid ColE2-P9. 
#=GF RA   Uchimura T, Lau PC; 
#=GF RL   Mol Gen Genet 1987;209:489-493.
#=GF DR   INTERPRO; IPR003059;
#=GF DR   TC; 9.B.41;
#=GF CC   These small bacterial proteins are required for colicin release
#=GF CC   and partial cell lysis. This family contains lysis proteins for
#=GF CC   several different forms of colicin. Swiss:Q02112 has been
#=GF CC   included in this family, the similarity is not highly
#=GF CC   significant, however it is also a short protein, that is
#=GF CC   involved in secretion of other proteins (Bateman A pers. obs.).
#=GF CC   This family includes a signal peptide motif and a lipid
#=GF CC   attachment site.
#=GF SQ   52
#=GS LYS9_ECOLX/1-47     AC P15176.1
#=GS C8URJ5_ECO1A/1-47   AC C8URJ5.1
#=GS B7LIF6_ECO81/1-45   AC B7LIF6.1
#=GS B9VMA2_ECOLX/1-47   AC B9VMA2.1
#=GS H4Z6A9_ECOLX/1-38   AC H4Z6A9.1
#=GS Q7B9M5_ESCFE/1-45   AC Q7B9M5.1
#=GS C8SXB4_KLEPR/1-49   AC C8SXB4.1
#=GS LYS5_ECOLX/1-47     AC P13344.1
#=GS Q51646_9ZZZZ/1-39   AC Q51646.1
#=GS E1HZG3_ECOLX/1-47   AC E1HZG3.1
#=GS D8BRC8_ECOLX/1-45   AC D8BRC8.1
#=GS LYS4_ECOLX/1-45     AC P09181.1
#=GS Q2PWZ0_KLEPN/1-49   AC Q2PWZ0.1
#=GS Q7B9M6_ESCFE/1-45   AC Q7B9M6.1
#=GS D8A0W2_ECOLX/1-45   AC D8A0W2.1
#=GS LYS0_ECOLX/1-49     AC P02987.1
#=GS A8ARS6_CITK8/1-49   AC A8ARS6.1
#=GS LYS2_ECOLX/1-47     AC P06963.1
#=GS Q9XB45_ECOLX/1-44   AC Q9XB45.1
#=GS LYS6_ECOLX/1-47     AC P13345.1
#=GS G8EAZ9_CITFR/1-44   AC G8EAZ9.1
#=GS LYS7_ECOLX/1-47     AC Q03709.1
#=GS B5TQV1_ECOLX/12-58  AC B5TQV1.1
#=GS D2TV60_CITRI/1-40   AC D2TV60.1
#=GS E9YMY4_ECOLX/1-47   AC E9YMY4.1
#=GS F4U3X4_ECOLX/1-47   AC F4U3X4.1
#=GS Q9RMR6_KLEPN/1-49   AC Q9RMR6.1
#=GS H4ZNR9_ECOLX/1-47   AC H4ZNR9.1
#=GS LYS8_ECOLX/1-47     AC P10099.1
#=GS O52991_ECOLX/1-48   AC O52991.1
#=GS Q79D20_ECOLX/1-45   AC Q79D20.1
#=GS Q7B490_ECOLX/1-47   AC Q7B490.1
#=GS Q9XBT4_KLEPN/1-44   AC Q9XBT4.1
#=GS D7XGH6_ECOLX/1-47   AC D7XGH6.1
#=GS Q57131_ECOLX/19-43  AC Q57131.1
#=GS O24683_SHIBO/1-45   AC O24683.1
#=GS E6BTB6_ECOLX/1-47   AC E6BTB6.1
#=GS LYS3_SHISO/1-45     AC P21185.1
#=GS E9VI30_ECOLX/1-30   AC E9VI30.1
#=GS F9CTU2_ECOLX/1-45   AC F9CTU2.1
#=GS LYS1_CITFR/1-44     AC P06962.1
#=GS Q51611_9ZZZZ/1-45   AC Q51611.1
#=GS LYS3_ECOLX/1-45     AC P05821.1
#=GS H5ANA7_ECOLX/1-47   AC H5ANA7.1
#=GS Q47111_ECOLX/1-47   AC Q47111.1
#=GS C8URK8_ECO1A/1-48   AC C8URK8.1
#=GS H5DU97_ECOLX/1-47   AC H5DU97.1
#=GS Q47127_ECOLX/1-43   AC Q47127.1
#=GS A4SH39_SHISS/1-45   AC A4SH39.1
#=GS H4Z6A1_ECOLX/1-47   AC H4Z6A1.1
#=GS E1JFJ0_ECOLX/1-47   AC E1JFJ0.1
#=GS Q46785_ECOLX/1-43   AC Q46785.1
LYS9_ECOLX/1-47                ..MK..KITGIILLLLA..aIILAACQANYIRDVQGGTVSPSSSAELTGLATQ.
C8URJ5_ECO1A/1-47              ..MK..KITGIILLLLA..vIILAACQANYIRDVQGGTVSPSSTAEVTGLATQ.
B7LIF6_ECO81/1-45              ..MK..KITWIILLLLA..aIILAACQANYIRDVQGGTVSPSSSAELTGL---g
B9VMA2_ECOLX/1-47              ..MK..KITGIILLLLA..aIILAACQANYIRDVQGGTVSPSSSAELTGLATQ.
H4Z6A9_ECOLX/1-38              ..--..------MLLAA...IILAACQANYIRDVQGGTVSPSSSAELTGLATQ.
Q7B9M5_ESCFE/1-45              ..MR..KRFFVGIFAIN...-LLVGCQANYIRDVQGGTVAPSSSSKLTGISVQ.
C8SXB4_KLEPR/1-49              ..MKkvKTIFLLILIAS..gFLLVACQANYIRDVQGGTVAPSSSSELTGIAVQ.
LYS5_ECOLX/1-47                ..MK..KITWIILLLLA..aIILAACQANYIHDVQGGTVSPSSSAELTGLATQ.
Q51646_9ZZZZ/1-39              ..MK..KITGIILLLLA..vIILSACQANYIRDVQGGTVSPSST---------a
E1HZG3_ECOLX/1-47              ..MK..KITGIILLLLA..vIILSACQANYIRDVQGGTVSPSSTAEVTGLATQ.
D8BRC8_ECOLX/1-45              ..MR..KRFFVGIFAIN...-LLVGCQANYIRDVQGGTVAPSSSSKLTGISVQ.
LYS4_ECOLX/1-45                ..MC.gKILLILFFIMT...--LSACQVNHIRDVKGGTVAPSSSSRLTGLKL-s
Q2PWZ0_KLEPN/1-49              ..MKkvKVVFLFILIFS..gFLLVACQANYIRDVQGGTVAPSSSSELTGIAVQ.
Q7B9M6_ESCFE/1-45              ..MR..KRFFVGIFAIN...-LLVGCQANYIRDVQGGTIAPSSSSKLTGIAVQ.
D8A0W2_ECOLX/1-45              ..MR..KRFFVGIFAIN...-LLVGCQANYIRDVQGGTVAPSSSSKLTGISVQ.
LYS0_ECOLX/1-49                ..MKkaKAIFLFILIVS..gFLLVACQANYIRDVQGGTVAPSSSSELTGIAVQ.
A8ARS6_CITK8/1-49              ..MKkvKVVFLFILIFS..gFLLVACQANYIRDVQGGTVAPSSSSELTGIAVQ.
LYS2_ECOLX/1-47                ..MK..KITGIILLLLA..vIILSACQANYIRDVQGGTVSPSSTAEVTGLATQ.
Q9XB45_ECOLX/1-44              ..MK..KIIICAISLGI...MLLAACQVNNVRDTGGGAVSPSST--VTGVSM-g
LYS6_ECOLX/1-47                ..MK..KITGIILLLLA..vIILAACQANYIRDVQGGTVSPSSTAELTGVETQ.
G8EAZ9_CITFR/1-44              ..MK..KIIICVILLAI...MLLAACQVNNVRDTGGGSVSPSSI--VTGVSM-g
LYS7_ECOLX/1-47                ..MK..KITGIILLLLA..aIILAACQANYIRDVQGGTVSPSSTAELTGVETQ.
B5TQV1_ECOLX/12-58             ..MK..KITGIILLLLA..vIILSACQANYIRDVQGGTVSPSSTAEVTGLATQ.
D2TV60_CITRI/1-40              mi--..-------FAISpgiMLLAACQVNNVRDTGGGSVSPSST--VTGVSM-g
E9YMY4_ECOLX/1-47              ..MK..KITGIILLLLA..vIILAACQANYIRDVQGGTVSPSSSAELTGLETQ.
F4U3X4_ECOLX/1-47              ..MK..KITGIILLLLA..vIILAACQANYIRDVQGGTVSPSSTAEVTGLATQ.
Q9RMR6_KLEPN/1-49              ..MKkvKTIFLFILIAS..gFLLVACQANYNRDVQGGTVAPSSSSELTGIAVQ.
H4ZNR9_ECOLX/1-47              ..MK..KITWIILLLLA..aIILAACQANYIRDVQGGTVSPSSSAELTGLATQ.
LYS8_ECOLX/1-47                ..MK..KITGIILLLLA..vIILAACQANYIRDVQGGTVSPSSTAEVTGLATQ.
O52991_ECOLX/1-48              .m-K.kKIGGSMILVLA..vLCLTACQANYVRDVQGGTIAPSSSSKLIGVAVQ.
Q79D20_ECOLX/1-45              ..MR..KRFFVGIFAIN...-LLVGCQANYIRDVQGGTVAPSSSSKLTGISVQ.
Q7B490_ECOLX/1-47              ..MK..KITGIILLLLA..vIILAACQANYIRDVQGGTVSPSSTAEVTGLATQ.
Q9XBT4_KLEPN/1-44              ..MK..KLLFLGVVTVT...VVLAACQVNNVRDTGGGAVSPSST--VTGVTLD.
D7XGH6_ECOLX/1-47              ..MK..KITGIILLLLA..vIILSACQANYIRDVQGGTVSPSSTAEVTGLATQ.
Q57131_ECOLX/19-43             ..--..-----------...--------NYIRDVQGGTVAPSSSSELTGIAVQ.
O24683_SHIBO/1-45              ..MK..KILSGGMVVLM...VFLSGCQANYIRDVQGGTVAPSSS-ELTGISVQ.
E6BTB6_ECOLX/1-47              ..MK..KITGIILLLLA..vIILSACQANYIRDVQGGTVSPSSTAEVTGLATQ.
LYS3_SHISO/1-45                ..MR..KRFFVGIFAIN...-LLVGCQANYIRDVQGGTVAPSSSSKLTGISVQ.
E9VI30_ECOLX/1-30              mk--..----IIIFLIT..iLFLSGCQANYIRDVQGGTVA-------------.
F9CTU2_ECOLX/1-45              ..MR..KRFFVGIFAIN...-LLVGCQANYIRDVQGGTVAPSSSSKLTGISVQ.
LYS1_CITFR/1-44                ..MK..KIIICVILLAI...MLLAACQVNNVRDTGGGSVSPSSI--VTGVSM-g
Q51611_9ZZZZ/1-45              ..MR..KRFFVGIFAIN...-LLVGCQANYIPDVQGGTIAPSSSSKLTGIAVQ.
LYS3_ECOLX/1-45                ..MR..KRFFVGIFAIN...-LLVGCQANYIRDVQGGTIAPSSSSKLTGIAVQ.
H5ANA7_ECOLX/1-47              ..MK..KITGIILLLLA..aIILAACQANYIRDVQGGTVSPSSSAELTGLATQ.
Q47111_ECOLX/1-47              ..MK..KITGIILLLFA..aIILAACQANYIRDVQGGTVSPSSTAELTGVETQ.
C8URK8_ECO1A/1-48              ..MK.kEIGGSMILVLA..vLCLTACQANYVRDVQGGTIAPSSSSKLIGVAVQ.
H5DU97_ECOLX/1-47              ..MK..KITWIILLLLA..aIILAACQANYIRDVQGGTVSPSSSAELTGLATQ.
Q47127_ECOLX/1-43              .m--..KITFLIITILS...--LSGCQANYIRDVQGGTVAPSSSSELTGIAVQ.
A4SH39_SHISS/1-45              ..MR..KRFFVGIFAIN...-LLVGCQANYIRDVQGGTVAPSSSSKLTGISVQ.
H4Z6A1_ECOLX/1-47              ..MK..KITGIILLLLA..aIILAACQANYIRDVQGGTVSPSSSAELTGLATQ.
E1JFJ0_ECOLX/1-47              ..MK..KITGIILLLLA..vIILSACQANYIRDVQGGTVSPSSTAEVTGLATQ.
Q46785_ECOLX/1-43              mk--..----IIIFLIT..iLFCSGCQANYIRDVQGGTVAPSSSSELTGIAVQ.
#=GC seq_cons                  ..MK..KlhhlhlLllu..hhlLuACQANYIRDVQGGTVuPSSSuELTGlusQ.
//
DBGET integrated database retrieval system