GenomeNet

Database: Pfam
Entry: MiAMP1
LinkDB: MiAMP1
Original site: MiAMP1 
#=GF ID   MiAMP1
#=GF AC   PF09117.5
#=GF DE   MiAMP1
#=GF AU   Sammut SJ
#=GF SE   pdb_1c01
#=GF GA   21.80 21.80;
#=GF TC   22.80 22.70;
#=GF NC   20.50 20.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   10543955
#=GF RT   MiAMP1, a novel protein from Macadamia integrifolia adopts a
#=GF RT   Greek key beta-barrel fold unique amongst plant antimicrobial
#=GF RT   proteins. 
#=GF RA   McManus AM, Nielsen KJ, Marcus JP, Harrison SJ, Green JL,
#=GF RA   Manners JM, Craik DJ; 
#=GF RL   J Mol Biol. 1999;293:629-638.
#=GF DR   INTERPRO; IPR015201;
#=GF DR   SCOP; 1c01; fa;
#=GF CC   MiAMP1 is a highly basic protein from the nut kernel of
#=GF CC   Macadamia integrifolia which inhibits the growth of several
#=GF CC   microbial plant pathogens in vitro while having no effect on
#=GF CC   mammalian or plant cells. It consists of eight beta-strands
#=GF CC   which are arranged in two Greek key motifs. These Greek key
#=GF CC   motifs then associate to form a Greek key beta-barrel [1].
#=GF SQ   31
#=GS AMP1_PINMO/27-105    AC P83880.2
#=GS D9IWD8_PINPS/27-105  AC D9IWD8.1
#=GS D8SEX2_SELML/7-84    AC D8SEX2.1
#=GS D8SHV7_SELML/24-115  AC D8SHV7.1
#=GS I1J0X4_BRADI/23-100  AC I1J0X4.1
#=GS D8SEX8_SELML/7-84    AC D8SEX8.1
#=GS D8RFF7_SELML/11-73   AC D8RFF7.1
#=GS D8SEX7_SELML/24-101  AC D8SEX7.1
#=GS Q4WB16_ASPFU/17-94   AC Q4WB16.2
#=GS A9NLS4_PICSI/27-105  AC A9NLS4.1
#=GS D8SHW0_SELML/24-115  AC D8SHW0.1
#=GS Q71QD8_PINSY/27-105  AC Q71QD8.1
#=GS D8SEX5_SELML/24-101  AC D8SEX5.1
#=GS D8SHV4_SELML/5-79    AC D8SHV4.1
#=GS B8LM35_PICSI/27-105  AC B8LM35.1
#=GS C5YEJ2_SORBI/38-112  AC C5YEJ2.1
#=GS D8R277_SELML/25-108  AC D8R277.1
#=GS Q71QD7_PINSY/27-105  AC Q71QD7.1
#=GS D8SEX4_SELML/20-97   AC D8SEX4.1
#=GS D8TDT8_SELML/26-103  AC D8TDT8.1
#=GS D8SF19_SELML/7-84    AC D8SF19.1
#=GS AMP1_MACIN/27-102    AC P80915.1
#=GS AMP1_MACIN/27-102    DR PDB; 1C01 A; 1-76;
#=GS D8QT03_SELML/20-103  AC D8QT03.1
#=GS C5YEJ4_SORBI/37-116  AC C5YEJ4.1
#=GS B0YAU4_ASPFC/17-94   AC B0YAU4.1
#=GS C4JS23_UNCRE/17-93   AC C4JS23.1
#=GS D8SEX3_SELML/24-98   AC D8SEX3.1
#=GS Q71QE0_PINSY/27-105  AC Q71QE0.1
#=GS D9IWD9_PINPS/28-105  AC D9IWD9.1
#=GS A1DAA4_NEOFI/17-94   AC A1DAA4.1
#=GS A9NK78_PICSI/27-105  AC A9NK78.1
AMP1_PINMO/27-105               ..............SYFSAWAGPGCNN.....HNARYS...KCGCSNIGHNVH.GGYEFVYQ.GQTAAAYNTDNCKGVAQTRFS....S....SVNQACS..N.FGWKSVFIQC...............................................................
D9IWD8_PINPS/27-105             ..............SYFTAWAGPGCNN.....HAARYS...KCGCSNIGNDVH.GGYEFVYQ.GQTASAYNTANCKGVAQTRFS....G....SVNQACS..G.FGWKSFFIQC...............................................................
D8SEX2_SELML/7-84               ..............SFFDAWAGPGCNN.....VLERYS...ACGCTNVRASQH.GGYSFVYQ.GQTAAAYNTANCRGVAHTRFS....R....SV-QDCS..G.FGWNSFFIQC...............................................................
D8SHV7_SELML/24-115             ..............SYFDAWAGPGCNN.....RLERYS...ACGCTNVGAS--.--------.---------------------....-....-------..-.----------rarllrpttwqtakvwrrhglvplygtaraldgtassssakelhgtqiarafnrlnwqrpfht
I1J0X4_BRADI/23-100             ..............SYLTSWDGPACTT.....NSGRMSsvgTCGCSPVR--FH.GGHEFNYR.GETATLYSEHGCAGTPYQVFE....D....T--QACG..D.FGWRSIHIDC...............................................................
D8SEX8_SELML/7-84               ..............SYFDAWAGPGCNN.....RLERYS...ACGCTNVGASQH.GGYSFAYQ.GQTAAAYNTANCQGVAHTRFS....G....SV-QDCS..G.FGWNSFFIQC...............................................................
D8RFF7_SELML/11-73              ..............SYLDTYSGLHCDK.....NTRRYD...SCGCNNIDFKQQ.KGYKFVYTnGQSATAYSGTRCQKRAGVSF-....-....-------..-.----------drn............................................................
D8SEX7_SELML/24-101             ..............SYFDTWAGPGCNN.....RLERYS...ACGCTNVGASQH.GGYSFGYQ.GQTAAAYNTANCQGVAHTRFS....G....SV-QDCS..G.FGWNSFFIQC...............................................................
Q4WB16_ASPFU/17-94              ivypytsascsgst-------------.....-VGKIT...SCGCTNMSGNYKiKGAKLDFQ.KATASFYKGRNCEGV---RIS....K....ASDQSCVklP.VGWESF----gsv............................................................
A9NLS4_PICSI/27-105             ..............SYFTAWAGPGCNN.....HAARYS...KCGCSNIGGNVH.GGYEFVYQ.GQTASAYNTANCNGVAHTRFS....G....SVNQACS..G.FGWKSFFIQC...............................................................
D8SHW0_SELML/24-115             ..............SYFDAWAGPGCNN.....RLERYS...ACGCTNVGAS--.--------.---------------------....-....-------..-.----------rarllrpttrqtakvwrrhglvplygtaraldgtassssakelhgtqiarafnrlnwqrpfht
Q71QD8_PINSY/27-105             ..............SYFTAWAGPGCNN.....HAARYS...KCGCSNIGNNVH.GGYEFMYQ.GQTASAYNTDNCKGVAQTRFS....S....SVNQACS..S.FGWKSFFIQC...............................................................
D8SEX5_SELML/24-101             ..............SYFDTWAGPGCNN.....QRVRYS...ACGCTNVGASQH.GGYSFGYQ.GQTAAAYNTANCQGVAQTRFS....A....SV-QDCS..G.FGWNSFFIQC...............................................................
D8SHV4_SELML/5-79               ..............SYFDAWAGPGGNN.....RLERYR...ACGCTNVGASQH.GGYSVVYL.GHAAAAYNTANCQGVAQRWF-....-....--RRHCS..G.FRWNSIFIQC...............................................................
B8LM35_PICSI/27-105             ..............SYFTAWEAAGCNN.....QSVQYS...KCGCSNIDDKFH.GGYEFVFE.GQSAAAYNTEICNGPPHTRFA....G....RGVQDCS..G.FGWKSFFIQC...............................................................
C5YEJ2_SORBI/38-112             ..............SSLTTWSGADCSG.....DTSTIG...ACGCTDLVFY--.AGQEFYYR.GQTATLYTGTGCAGTPYQVFE....D....T--QACG..D.FGWRSINIHC...............................................................
D8R277_SELML/25-108             ..............SYFDVYLGPGCHN.....DMQHYS...VCGCLNIHPSYH.GGFKFVYE.GQRIRTFNQPFCQDEVSTIIStireA....TTMYSCN..QvFQFQSIFFQC...............................................................
Q71QD7_PINSY/27-105             ..............SYFTAWAGPGCNN.....HAARYS...KCGCSNIGNNVH.GGYEFMYQ.GQTAAAYNTDNCKGVAQTRFS....S....SVNQACS..S.FGWKSFFIQC...............................................................
D8SEX4_SELML/20-97              ..............SYFDTWAGPGCNN.....QRVRYS...ACGCTNVGASQH.GGYSFGYQ.GQTAAAYNTANCQGVAQTRFS....A....SV-QDCS..G.FGWNSFFIQC...............................................................
D8TDT8_SELML/26-103             ..............STFVTFQSPDCTN.....RVL-VT...RCGCNNLDASVG.YGFEWHKQrESTANLYNQPDCKGSPHTSLD....S....SV-SACG..P.IGWKSIEISC...............................................................
D8SF19_SELML/7-84               ..............SFFDAWAGPGCNN.....RLERYR...ACGCNNVGASQH.GGYSFAYQ.GQTAAAYNTANCRGVAHTRFS....S....SV-QDCS..G.FGWRSIFIQC...............................................................
AMP1_MACIN/27-102               ..............SAFTVWSGPGCNN.....RAERYS...KCGCSAIHQK--.GGYDFSYT.GQTAALYNQAGCSGVAHTRFG....S....SA-RACN..P.FGWKSIFIQC...............................................................
#=GR AMP1_MACIN/27-102    SS    ..............-EEEE-SSSSSSS.....--EEE-...SSEEEE------.S-EEEE-S.S--EEEESSGGG-S-EEEEES....S....----B-S..-.---SEEEE--...............................................................
D8QT03_SELML/20-103             ..............SYFDVYFGPGCHN.....DMQHYS...VCGCLNIHPSYH.GGFKFVYE.GQPIRTYNQPFCQDEVSTTIS....TirqaTTMYSCN..QvFQFQSIFFQC...............................................................
C5YEJ4_SORBI/37-116             ..............SYLTSWGGPGCTSsgkkgHIASAG...SCGCNHIR--FH.GGHEFNFR.GETATLYTEPGCAGTPYQVFE....D....T--QACG..D.FGWRSIHIDC...............................................................
B0YAU4_ASPFC/17-94              ivypytsascsgst-------------.....-VGKIT...SCGCTNMSGNYKiKGAKLDFQ.KATASFYKGRNCEGV---RIS....K....ASDQSCVklP.VGWESF----gsv............................................................
C4JS23_UNCRE/17-93              .ivypyessscrgs-------------.....SVGRIS...ACGCTNMGANYDiRAVKLNFQ.QATASFYKEKNCVGV---RFS....K....ASDQSCAkpP.VGWGT-----igs............................................................
D8SEX3_SELML/24-98              ..............SYFDAWAGPGCNN.....WLERYR...ACGCTNVGASQH.GGYSVAYL.GHAAAAYNTANCQGVAQRWF-....-....--RRHCS..G.FRWNSIFIQC...............................................................
Q71QE0_PINSY/27-105             ..............SYFTAWAGPGCNN.....HAARYS...KCGCSNIGNNVH.AGYEFVYQ.GQTASAYNTANCKGVAQTRFS....G....SVNQACS..G.FGWKSFFIQC...............................................................
D9IWD9_PINPS/28-105             ..............SYFTAWESAVCNN.....ETVRYN...ECWCSNINDKFR.GGYEFVNQ.GQIAAAYNTELCNGPPHTRFS....G....SV-QDCS..G.FGWKSFFIQC...............................................................
A1DAA4_NEOFI/17-94              ivypytsascgget-------------.....-VGKIT...SCGCTNMSRNYKiKGAKLNFQ.KATASFYKGRDCEGV---RIS....K....ASDQTCVklP.VGWESF----gsv............................................................
A9NK78_PICSI/27-105             ..............SYFTAWAGPGCNN.....HAARYS...KCGCSNIGGNVH.GGYEFVYQ.GQTASAYNTANCNGVAHTRFS....G....SVNQACS..G.FGWKSFFIQC...............................................................
#=GC SS_cons                    ..............-EEEE-SSSSSSS.....--EEE-...SSEEEE------.S-EEEE-S.S--EEEESSGGG-S-EEEEES....S....----B-S..-.---SEEEE--...............................................................
#=GC seq_cons                   ..............SYFssWuGPGCNN.....chtRYS...sCGCoNluss.H.GGYcFsYQ.GQTAusYNsssCpGVspTRFS....s....os.QsCu..s.FGWpShFIQC...............................................................
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