GenomeNet

Database: Pfam
Entry: MiAMP1
LinkDB: MiAMP1
Original site: MiAMP1 
#=GF ID   MiAMP1
#=GF AC   PF09117.6
#=GF DE   MiAMP1
#=GF AU   Sammut SJ
#=GF SE   pdb_1c01
#=GF GA   21.80 21.80;
#=GF TC   22.60 27.70;
#=GF NC   21.30 20.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   10543955
#=GF RT   MiAMP1, a novel protein from Macadamia integrifolia adopts a
#=GF RT   Greek key beta-barrel fold unique amongst plant antimicrobial
#=GF RT   proteins. 
#=GF RA   McManus AM, Nielsen KJ, Marcus JP, Harrison SJ, Green JL,
#=GF RA   Manners JM, Craik DJ; 
#=GF RL   J Mol Biol. 1999;293:629-638.
#=GF DR   INTERPRO; IPR015201;
#=GF DR   SCOP; 1c01; fa;
#=GF CC   MiAMP1 is a highly basic protein from the nut kernel of
#=GF CC   Macadamia integrifolia which inhibits the growth of several
#=GF CC   microbial plant pathogens in vitro while having no effect on
#=GF CC   mammalian or plant cells. It consists of eight beta-strands
#=GF CC   which are arranged in two Greek key motifs. These Greek key
#=GF CC   motifs then associate to form a Greek key beta-barrel [1].
#=GF SQ   48
#=GS W1PA47_AMBTC/23-98   AC W1PA47.1
#=GS A1C8X8_ASPCL/16-97   AC A1C8X8.1
#=GS A1DAA4_NEOFI/16-96   AC A1DAA4.1
#=GS D8SEX8_SELML/7-84    AC D8SEX8.1
#=GS I1J0X4_BRADI/23-100  AC I1J0X4.1
#=GS D8SEX7_SELML/24-101  AC D8SEX7.1
#=GS Q71QD8_PINSY/27-105  AC Q71QD8.1
#=GS J9Q6B0_PINMO/27-105  AC J9Q6B0.1
#=GS B0YAU4_ASPFC/16-96   AC B0YAU4.1
#=GS D8SHV4_SELML/5-79    AC D8SHV4.1
#=GS D8SEX4_SELML/20-97   AC D8SEX4.1
#=GS D8TDT8_SELML/26-103  AC D8TDT8.1
#=GS J9Q6X1_PINMO/27-105  AC J9Q6X1.1
#=GS AMP1_MACIN/27-102    AC P80915.1
#=GS AMP1_MACIN/27-102    DR PDB; 1C01 A; 1-76;
#=GS W5BA18_WHEAT/23-97   AC W5BA18.1
#=GS K3YCJ0_SETIT/42-120  AC K3YCJ0.1
#=GS J9Q7C0_PINMO/27-105  AC J9Q7C0.1
#=GS C5YEJ4_SORBI/37-116  AC C5YEJ4.1
#=GS D9IWD9_PINPS/28-105  AC D9IWD9.1
#=GS AMP1_PINMO/27-105    AC P83880.2
#=GS C4JS23_UNCRE/16-93   AC C4JS23.1
#=GS D9IWD8_PINPS/27-105  AC D9IWD8.1
#=GS D8SHW0_SELML/24-72   AC D8SHW0.1
#=GS J9Q7N8_PINMO/27-105  AC J9Q7N8.1
#=GS D8SEX2_SELML/7-84    AC D8SEX2.1
#=GS M9VUK9_9ARAE/32-107  AC M9VUK9.1
#=GS M9VRW5_9ARAE/32-107  AC M9VRW5.1
#=GS K3YCT3_SETIT/30-104  AC K3YCT3.1
#=GS W5B842_WHEAT/14-88   AC W5B842.1
#=GS W1PCM8_AMBTC/29-104  AC W1PCM8.1
#=GS Q4WB16_ASPFU/16-96   AC Q4WB16.2
#=GS K3YBS0_SETIT/63-118  AC K3YBS0.1
#=GS A9NLS4_PICSI/27-105  AC A9NLS4.1
#=GS D8SEX5_SELML/24-101  AC D8SEX5.1
#=GS B8LM35_PICSI/27-105  AC B8LM35.1
#=GS C5YEJ2_SORBI/38-112  AC C5YEJ2.1
#=GS D8SHV7_SELML/24-70   AC D8SHV7.1
#=GS L0P1Z4_9POAL/25-102  AC L0P1Z4.1
#=GS J9Q7X1_PINMO/27-105  AC J9Q7X1.1
#=GS D8R277_SELML/25-108  AC D8R277.1
#=GS Q71QD7_PINSY/27-105  AC Q71QD7.1
#=GS W5ARA3_WHEAT/23-97   AC W5ARA3.1
#=GS D8SF19_SELML/7-84    AC D8SF19.1
#=GS D8RFF7_SELML/11-74   AC D8RFF7.1
#=GS D8QT03_SELML/20-103  AC D8QT03.1
#=GS D8SEX3_SELML/24-98   AC D8SEX3.1
#=GS Q71QE0_PINSY/27-105  AC Q71QE0.1
#=GS A9NK78_PICSI/27-105  AC A9NK78.1
W1PA47_AMBTC/23-98              .....SSLTVWAGPGCN.....N.R.AERYSKCGCS..GIH...LK...GGYEFVY.NGQ...TAALYNQPDCKGVAH.TRFG..SGA.RS.....CNA..FGWKSMFIQC....................
A1C8X8_ASPCL/16-97              tivyp-----YTSASCG....vS.T.VGKITSCGCTnmGAN...YK..iTGAKLDF.QKA...TAPFYQGKDCKGAFIsKALD..---.QS.....CVElpVGWSS-----fgsvkih.............
A1DAA4_NEOFI/16-96              tivyp-----YTSASCG.....G.EtVGKITSCGCT..NMS...RNykiKGAKLNF.QKA...TASFYKGRDCEGVRI.SKAS..D--.QT.....CVKlpVGWES-----fgsvri..............
D8SEX8_SELML/7-84               .....SYFDAWAGPGCN.....N.R.LERYSACGCTnvGAS...QH...GGYSFAY.QGQ...TAAAYNTANCQGVAH.TRFS..GSV.QD.....CSG..FGWNSFFIQC....................
I1J0X4_BRADI/23-100             .....SYLTSWDGPACTt..nsG.R.MSSVGTCGCS..PVR...FH...GGHEFNY.RGE...TATLYSEHGCAGTPY.QVFE..DT-.QA.....CGD..FGWRSIHIDC....................
D8SEX7_SELML/24-101             .....SYFDTWAGPGCN.....N.R.LERYSACGCTnvGAS...QH...GGYSFGY.QGQ...TAAAYNTANCQGVAH.TRFS..GSV.QD.....CSG..FGWNSFFIQC....................
Q71QD8_PINSY/27-105             .....SYFTAWAGPGCN.....N.H.AARYSKCGCSniGNN...VH...GGYEFMY.QGQ...TASAYNTDNCKGVAQ.TRFS..SSVnQA.....CSS..FGWKSFFIQC....................
J9Q6B0_PINMO/27-105             .....SYFSAWVGPGCN.....N.H.NARYNKCGCSniSHN...VH...GGYEFVY.QGQ...APTAYNTNNCKGVAQ.TRFS..SNVnQA.....CSN..FAWKSVFIQC....................
B0YAU4_ASPFC/16-96              tivyp-----YTSASCS.....G.StVGKITSCGCT..NMSgnyKI...KGAKLDF.QKA...TASFYKGRNCEGVRI.SKAS..D--.QS.....CVKlpVGWES-----fgsvri..............
D8SHV4_SELML/5-79               .....SYFDAWAGPGGN.....N.R.LERYRACGCTnvGAS...QH...GGYSVVY.LGH...AAAAYNTANCQGVAQ.RWFR..---.RH.....CSG..FRWNSIFIQC....................
D8SEX4_SELML/20-97              .....SYFDTWAGPGCN.....N.Q.RVRYSACGCTnvGAS...QH...GGYSFGY.QGQ...TAAAYNTANCQGVAQ.TRFS..ASV.QD.....CSG..FGWNSFFIQC....................
D8TDT8_SELML/26-103             .....STFVTFQSPDCT.....N.R.V-LVTRCGCN..NLD...AS...VGYGFEW.HKQresTANLYNQPDCKGSPH.TSLD..SSV.SA.....CGP..IGWKSIEISC....................
J9Q6X1_PINMO/27-105             .....SYLSAWVGPGCN.....N.H.NARYNKCGCSniSHN...VH...GGYEFVY.QGQ...APMAYNTNNCKGVAQ.TRFS..SNVnQA.....CSN..FAWKSVFIQC....................
AMP1_MACIN/27-102               .....SAFTVWSGPGCN.....N.R.AERYSKCGCS..AIH...QK...GGYDFSY.TGQ...TAALYNQAGCSGVAH.TRFG..SSA.RA.....CNP..FGWKSIFIQC....................
#=GR AMP1_MACIN/27-102    SS    .....-EEEE-SSSSSS.....S.-.-EEE-SSEEE..E--...--...S-EEEE-.SS-...-EEEESSGGG-S-EE.EEES..S--.-B.....-S-..---SEEEE--....................
W5BA18_WHEAT/23-97              .....SYFSSWDGPACT.....G.R.MSSAGSCGCS..PVH...FH...GGHEFNF.RGE...TATLYSEHGCAGTPY.QVFE..DT-.QA.....CGD..FGWRSIHIDC....................
K3YCJ0_SETIT/42-120             .....SYLTSWGGPGCTpg.eqG.H.MASVGSCGCN..HVR...FH...GGHEFNF.RGE...KATLYPKPGCAGTPY.EVFE..DT-.RA.....CGD..FGWHSIHIDC....................
J9Q7C0_PINMO/27-105             .....SYFSAWVGPGCN.....N.H.NARYNKCGCFniSHN...VH...GGYEFVY.QGQ...APMAYNTNNCKGVAQ.TRFS..SNVnQA.....CSN..FAWKSVFIQC....................
C5YEJ4_SORBI/37-116             .....SYLTSWGGPGCTssgkkG.H.IASAGSCGCN..HIR...FH...GGHEFNF.RGE...TATLYTEPGCAGTPY.QVFE..DT-.QA.....CGD..FGWRSIHIDC....................
D9IWD9_PINPS/28-105             .....SYFTAWESAVCN.....N.E.TVRYNECWCSniNDK...FR...GGYEFVN.QGQ...IAAAYNTELCNGPPH.TRFS..GSV.QD.....CSG..FGWKSFFIQC....................
AMP1_PINMO/27-105               .....SYFSAWAGPGCN.....N.H.NARYSKCGCSniGHN...VH...GGYEFVY.QGQ...TAAAYNTDNCKGVAQ.TRFS..SSVnQA.....CSN..FGWKSVFIQC....................
C4JS23_UNCRE/16-93              tivyp-----YESSSCR.....GsS.VGRISACGCT..NMG...ANydiRAVKLNF.QQA...TASFYKEKNCVGVRF.SKAS..DQ-.-S.....CAKppVGWGTI----gs..................
D9IWD8_PINPS/27-105             .....SYFTAWAGPGCN.....N.H.AARYSKCGCSniGND...VH...GGYEFVY.QGQ...TASAYNTANCKGVAQ.TRFS..GSVnQA.....CSG..FGWKSFFIQC....................
D8SHW0_SELML/24-72              .....SYFDAWAGPGCN.....N.R.LERYSACGCT..NVG...AS...-------.---...---------------.----..---.--.....---..----------rarllrpttrqtakvwrrhg
J9Q7N8_PINMO/27-105             .....SYFSAWVGPGCN.....N.H.NARYNKCGCSniSHN...VH...GGYEFVY.QGQ...APMAYNTNNCKGVAQ.TRFS..SNVnQA.....CSN..FAWKSVFIQC....................
D8SEX2_SELML/7-84               .....SFFDAWAGPGCN.....N.V.LERYSACGCTnvRAS...QH...GGYSFVY.QGQ...TAAAYNTANCRGVAH.TRFS..RSV.QD.....CSG..FGWNSFFIQC....................
M9VUK9_9ARAE/32-107             .....STLTIYEGNKCT.....G.K.STKINDLSCH..RLE...WN...GGYDFKY.QAK..yPAIFFRSPKCGGIPS.KIKR..SD-.TT.....CGN.lLGHLSVRI--i...................
M9VRW5_9ARAE/32-107             .....STLTIYEGDKCT.....K.R.STKFSDFSCH..RLQ...WL...GSYNFKY.QAK..yPALFFRSPKCGGIPS.KIKR..-GD.TT.....CGN.lLGHLSVRI--i...................
K3YCT3_SETIT/30-104             .....SHLTSWAGPGCS.....G.Q.TAIAGSCGCS..NLQ...FY...DGQEKSY.QGQ...TARLYTETGCAGTSY.LVFE..DT-.QA.....CGD..FGWRSISIDC....................
W5B842_WHEAT/14-88              .....SYFSSWDGPACT.....G.R.MSSAGSCGCS..PVH...FH...GGHEFNF.RGE...TATLYSEHGCAGTPY.QVFE..DT-.QA.....CGD..FGWRSIHIDC....................
W1PCM8_AMBTC/29-104             .....SHFTVWAGPGCN.....N.R.AERVSKCGCS..AIK...QK...GGYQFVY.TGQ...TAALYNQGNCQGVAH.TRFG..SGA.SS.....CSA..FGWRSIFIQC....................
Q4WB16_ASPFU/16-96              tivyp-----YTSASCS.....G.StVGKITSCGCT..NMSgnyKI...KGAKLDF.QKA...TASFYKGRNCEGVRI.SKAS..D--.QS.....CVKlpVGWES-----fgsvri..............
K3YBS0_SETIT/63-118             .vlrs------------.....-.-.----------..DLQ...FY...GGQD--F.QGE...TATFYTETGCAGTPY.QVIGgfEGT.QF.....CGD..FGWRSINIDC....................
A9NLS4_PICSI/27-105             .....SYFTAWAGPGCN.....N.H.AARYSKCGCSniGGN...VH...GGYEFVY.QGQ...TASAYNTANCNGVAH.TRFS..GSVnQA.....CSG..FGWKSFFIQC....................
D8SEX5_SELML/24-101             .....SYFDTWAGPGCN.....N.Q.RVRYSACGCTnvGAS...QH...GGYSFGY.QGQ...TAAAYNTANCQGVAQ.TRFS..ASV.QD.....CSG..FGWNSFFIQC....................
B8LM35_PICSI/27-105             .....SYFTAWEAAGCN.....N.Q.SVQYSKCGCSniDDK...FH...GGYEFVF.EGQ...SAAAYNTEICNGPPH.TRFA.gRGV.QD.....CSG..FGWKSFFIQC....................
C5YEJ2_SORBI/38-112             .....SSLTTWSGADCS.....G.D.TSTIGACGCT..DLV...FY...AGQEFYY.RGQ...TATLYTGTGCAGTPY.QVFE..DT-.QA.....CGD..FGWRSINIHC....................
D8SHV7_SELML/24-70              .....SYFDAWAGPGCN.....N.R.LERYSACGCT..NVG...A-...-------.---...---------------.----..---.--.....---..----------srarllrpttwqtakvwrr.
L0P1Z4_9POAL/25-102             .....SYLTSWGGPGCTt..skG.H.MSSVGSCGCN..HIR...FH...GGHEFNF.RGE...KATLYTKPGCAGTPY.QVFE..DT-.QA.....CGD..FGWHSIHIDC....................
J9Q7X1_PINMO/27-105             .....SYFSAWAGPGCN.....N.H.NARYNKCGCSniGHN...VH...EGYEFVY.QGQ...APTAYNTNNYKGVAQ.TRFS..SNVnQA.....CNN..FAWKSVFIQC....................
D8R277_SELML/25-108             .....SYFDVYLGPGCH.....N.D.MQHYSVCGCLniHPS...YH...GGFKFVY.EGQ...RIRTFNQPFCQDEVS.TIIS..TIR.EAttmysCNQ.vFQFQSIFFQC....................
Q71QD7_PINSY/27-105             .....SYFTAWAGPGCN.....N.H.AARYSKCGCSniGNN...VH...GGYEFMY.QGQ...TAAAYNTDNCKGVAQ.TRFS..SSVnQA.....CSS..FGWKSFFIQC....................
W5ARA3_WHEAT/23-97              .....SYFSSWDGPACT.....G.R.MSSAGTCGCS..PVH...FH...GGHEFNF.RGE...TATLYSEHGCAGTPY.QVFE..DT-.QA.....CGD..FGWRSIHIDC....................
D8SF19_SELML/7-84               .....SFFDAWAGPGCN.....N.R.LERYRACGCNnvGAS...QH...GGYSFAY.QGQ...TAAAYNTANCRGVAH.TRFS..SSV.QD.....CSG..FGWRSIFIQC....................
D8RFF7_SELML/11-74              .....SYLDTYSGLHCD.....K.N.TRRYDSCGCNniDFK...QQ...KGYKFVYtNGQ...SATAYSGTRCQKRAG.VSFD..---.--.....---..----------rnd.................
D8QT03_SELML/20-103             .....SYFDVYFGPGCH.....N.D.MQHYSVCGCLniHPS...YH...GGFKFVY.EGQ...PIRTYNQPFCQDEVS.TTIS..TIR.QAttmysCNQ.vFQFQSIFFQC....................
D8SEX3_SELML/24-98              .....SYFDAWAGPGCN.....N.W.LERYRACGCTnvGAS...QH...GGYSVAY.LGH...AAAAYNTANCQGVAQ.RWFR..---.RH.....CSG..FRWNSIFIQC....................
Q71QE0_PINSY/27-105             .....SYFTAWAGPGCN.....N.H.AARYSKCGCSniGNN...VH...AGYEFVY.QGQ...TASAYNTANCKGVAQ.TRFS..GSVnQA.....CSG..FGWKSFFIQC....................
A9NK78_PICSI/27-105             .....SYFTAWAGPGCN.....N.H.AARYSKCGCSniGGN...VH...GGYEFVY.QGQ...TASAYNTANCNGVAH.TRFS..GSVnQA.....CSG..FGWKSFFIQC....................
#=GC SS_cons                    .....-EEEE-SSSSSS.....S.-.-EEE-SSEEE..E--...--...S-EEEE-.SS-...-EEEESSGGG-S-EE.EEES..S--.-B.....-S-..---SEEEE--....................
#=GC seq_cons                   .....SYFsuWsGPGCs.....N.+.hs+YusCGCo..shs...hH...GGYcFsY.pGQ...TAshYssssCpGlsp.opFu..ss..Qu.....Cus..FGW+ShaIpC....................
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