GenomeNet

Database: Pfam
Entry: MiAMP1
LinkDB: MiAMP1
Original site: MiAMP1 
#=GF ID   MiAMP1
#=GF AC   PF09117.8
#=GF DE   MiAMP1
#=GF AU   Sammut SJ
#=GF SE   pdb_1c01
#=GF GA   21.80 21.80;
#=GF TC   23.50 26.40;
#=GF NC   21.50 20.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   10543955
#=GF RT   MiAMP1, a novel protein from Macadamia integrifolia adopts a
#=GF RT   Greek key beta-barrel fold unique amongst plant antimicrobial
#=GF RT   proteins. 
#=GF RA   McManus AM, Nielsen KJ, Marcus JP, Harrison SJ, Green JL,
#=GF RA   Manners JM, Craik DJ; 
#=GF RL   J Mol Biol. 1999;293:629-638.
#=GF DR   INTERPRO; IPR015201;
#=GF DR   SCOP; 1c01; fa;
#=GF CC   MiAMP1 is a highly basic protein from the nut kernel of
#=GF CC   Macadamia integrifolia which inhibits the growth of several
#=GF CC   microbial plant pathogens in vitro while having no effect on
#=GF CC   mammalian or plant cells. It consists of eight beta-strands
#=GF CC   which are arranged in two Greek key motifs. These Greek key
#=GF CC   motifs then associate to form a Greek key beta-barrel [1].
#=GF SQ   31
#=GS W1PA47_AMBTC/23-98       AC W1PA47.1
#=GS A1C8X8_ASPCL/16-97       AC A1C8X8.1
#=GS D8SHV7_SELML/24-58       AC D8SHV7.1
#=GS C4JS23_UNCRE/16-93       AC C4JS23.1
#=GS A0A096TRQ6_MAIZE/41-115  AC A0A096TRQ6.1
#=GS D8SEX2_SELML/7-84        AC D8SEX2.1
#=GS A0A096S4P8_MAIZE/39-116  AC A0A096S4P8.1
#=GS A1DAA4_NEOFI/16-96       AC A1DAA4.1
#=GS I1J0X4_BRADI/23-100      AC I1J0X4.1
#=GS D8SEX8_SELML/7-84        AC D8SEX8.1
#=GS K3YCT3_SETIT/30-104      AC K3YCT3.1
#=GS W1PCM8_AMBTC/29-104      AC W1PCM8.1
#=GS D8SHW0_SELML/24-70       AC D8SHW0.1
#=GS A0A0K8LD30_9EURO/16-97   AC A0A0K8LD30.1
#=GS Q4WB16_ASPFU/16-96       AC Q4WB16.2
#=GS K3YBS0_SETIT/63-118      AC K3YBS0.1
#=GS D8SEX7_SELML/24-101      AC D8SEX7.1
#=GS D8SEX5_SELML/24-101      AC D8SEX5.1
#=GS D8SHV4_SELML/5-79        AC D8SHV4.1
#=GS C5YEJ2_SORBI/38-112      AC C5YEJ2.1
#=GS D8R277_SELML/25-108      AC D8R277.1
#=GS D8SEX4_SELML/20-97       AC D8SEX4.1
#=GS D8TDT8_SELML/26-103      AC D8TDT8.1
#=GS W5ARA3_WHEAT/23-97       AC W5ARA3.1
#=GS D8SF19_SELML/7-84        AC D8SF19.1
#=GS W5BA18_WHEAT/23-97       AC W5BA18.1
#=GS K3YCJ0_SETIT/42-120      AC K3YCJ0.1
#=GS D8RFF7_SELML/11-74       AC D8RFF7.1
#=GS D8QT03_SELML/20-103      AC D8QT03.1
#=GS C5YEJ4_SORBI/37-116      AC C5YEJ4.1
#=GS D8SEX3_SELML/24-98       AC D8SEX3.1
W1PA47_AMBTC/23-98                  .....SSLTVWAGPGCN.....N.R.AERYSKCGCS..GIH...LK...GGYEFVY.NGQ...TAALYNQPDCKGVAH.TRFG..SGARS.....CNA..FGWKSMFIQC...................
A1C8X8_ASPCL/16-97                  tivyp-----YTSASCG....vS.T.VGKITSCGCTnmGAN...YK..iTGAKLDF.QKA...TAPFYQGKDCKGAFIsKALD..---QS.....CVElpVGWSS-----fgsvkih............
D8SHV7_SELML/24-58                  .....SYFDAWAGPGCN.....N.R.LERYSACGCT..NVG...A-...-------.---...---------------.----..-----.....---..----------srarllr............
C4JS23_UNCRE/16-93                  tivyp-----YESSSCR.....GsS.VGRISACGCT..NMG...ANydiRAVKLNF.QQA...TASFYKEKNCVGVRF.SKAS..DQ--S.....CAKppVGWGTI----gs.................
A0A096TRQ6_MAIZE/41-115             .....SSLTTWSAAGCS.....G.D.TSIVGSCGCT..DLA...FY...AGQEFYY.RGE...TATLYTGTGCTGTPY.QVFE..DT-QA.....CGD..FGWRSINIDC...................
D8SEX2_SELML/7-84                   .....SFFDAWAGPGCN.....N.V.LERYSACGCTnvRAS...QH...GGYSFVY.QGQ...TAAAYNTANCRGVAH.TRFS..RSVQD.....CSG..FGWNSFFIQC...................
A0A096S4P8_MAIZE/39-116             .....SYLTSWGGPGCTtg.tkG.H.IASAGSCGCN..HLR...FH...GGHEFNF.RGE...TATLYSQPGCVGTPY.QVFE..DT-QA.....CGD..FGWHRVNI--l..................
A1DAA4_NEOFI/16-96                  tivyp-----YTSASCG.....G.EtVGKITSCGCT..NMS...RNykiKGAKLNF.QKA...TASFYKGRDCEGVRI.SKAS..D--QT.....CVKlpVGWES-----fgsvri.............
I1J0X4_BRADI/23-100                 .....SYLTSWDGPACTt..nsG.R.MSSVGTCGCS..PVR...FH...GGHEFNY.RGE...TATLYSEHGCAGTPY.QVFE..DT-QA.....CGD..FGWRSIHIDC...................
D8SEX8_SELML/7-84                   .....SYFDAWAGPGCN.....N.R.LERYSACGCTnvGAS...QH...GGYSFAY.QGQ...TAAAYNTANCQGVAH.TRFS..GSVQD.....CSG..FGWNSFFIQC...................
K3YCT3_SETIT/30-104                 .....SHLTSWAGPGCS.....G.Q.TAIAGSCGCS..NLQ...FY...DGQEKSY.QGQ...TARLYTETGCAGTSY.LVFE..DT-QA.....CGD..FGWRSISIDC...................
W1PCM8_AMBTC/29-104                 .....SHFTVWAGPGCN.....N.R.AERVSKCGCS..AIK...QK...GGYQFVY.TGQ...TAALYNQGNCQGVAH.TRFG..SGASS.....CSA..FGWRSIFIQC...................
D8SHW0_SELML/24-70                  .....SYFDAWAGPGCN.....N.R.LERYSACGCT..NVG...A-...-------.---...---------------.----..-----.....---..----------srarllrpttrqtakvwrr
A0A0K8LD30_9EURO/16-97              tivyp-----YTSASCG.....G.DyVGRITACGCT..NMN...RNydiKGIKLDF.QRA...TASFYKGRDCQGVRI.SKAS..D--QT.....CVHlpVGWES-----fgsvnih............
Q4WB16_ASPFU/16-96                  tivyp-----YTSASCS.....G.StVGKITSCGCT..NMSgnyKI...KGAKLDF.QKA...TASFYKGRNCEGVRI.SKAS..D--QS.....CVKlpVGWES-----fgsvri.............
K3YBS0_SETIT/63-118                 .vlrs------------.....-.-.----------..DLQ...FY...GGQD--F.QGE...TATFYTETGCAGTPY.QVIGgfEGTQF.....CGD..FGWRSINIDC...................
D8SEX7_SELML/24-101                 .....SYFDTWAGPGCN.....N.R.LERYSACGCTnvGAS...QH...GGYSFGY.QGQ...TAAAYNTANCQGVAH.TRFS..GSVQD.....CSG..FGWNSFFIQC...................
D8SEX5_SELML/24-101                 .....SYFDTWAGPGCN.....N.Q.RVRYSACGCTnvGAS...QH...GGYSFGY.QGQ...TAAAYNTANCQGVAQ.TRFS..ASVQD.....CSG..FGWNSFFIQC...................
D8SHV4_SELML/5-79                   .....SYFDAWAGPGGN.....N.R.LERYRACGCTnvGAS...QH...GGYSVVY.LGH...AAAAYNTANCQGVAQ.RWFR..---RH.....CSG..FRWNSIFIQC...................
C5YEJ2_SORBI/38-112                 .....SSLTTWSGADCS.....G.D.TSTIGACGCT..DLV...FY...AGQEFYY.RGQ...TATLYTGTGCAGTPY.QVFE..DT-QA.....CGD..FGWRSINIHC...................
D8R277_SELML/25-108                 .....SYFDVYLGPGCH.....N.D.MQHYSVCGCLniHPS...YH...GGFKFVY.EGQ...RIRTFNQPFCQDEVS.TIIS..TIREAttmysCNQ.vFQFQSIFFQC...................
D8SEX4_SELML/20-97                  .....SYFDTWAGPGCN.....N.Q.RVRYSACGCTnvGAS...QH...GGYSFGY.QGQ...TAAAYNTANCQGVAQ.TRFS..ASVQD.....CSG..FGWNSFFIQC...................
D8TDT8_SELML/26-103                 .....STFVTFQSPDCT.....N.R.V-LVTRCGCN..NLD...AS...VGYGFEW.HKQresTANLYNQPDCKGSPH.TSLD..SSVSA.....CGP..IGWKSIEISC...................
W5ARA3_WHEAT/23-97                  .....SYFSSWDGPACT.....G.R.MSSAGTCGCS..PVH...FH...GGHEFNF.RGE...TATLYSEHGCAGTPY.QVFE..DT-QA.....CGD..FGWRSIHIDC...................
D8SF19_SELML/7-84                   .....SFFDAWAGPGCN.....N.R.LERYRACGCNnvGAS...QH...GGYSFAY.QGQ...TAAAYNTANCRGVAH.TRFS..SSVQD.....CSG..FGWRSIFIQC...................
W5BA18_WHEAT/23-97                  .....SYFSSWDGPACT.....G.R.MSSAGSCGCS..PVH...FH...GGHEFNF.RGE...TATLYSEHGCAGTPY.QVFE..DT-QA.....CGD..FGWRSIHIDC...................
K3YCJ0_SETIT/42-120                 .....SYLTSWGGPGCTpg.eqG.H.MASVGSCGCN..HVR...FH...GGHEFNF.RGE...KATLYPKPGCAGTPY.EVFE..DT-RA.....CGD..FGWHSIHIDC...................
D8RFF7_SELML/11-74                  .....SYLDTYSGLHCD.....K.N.TRRYDSCGCNniDFK...QQ...KGYKFVYtNGQ...SATAYSGTRCQKRAG.VSFD..-----.....---..----------rnd................
D8QT03_SELML/20-103                 .....SYFDVYFGPGCH.....N.D.MQHYSVCGCLniHPS...YH...GGFKFVY.EGQ...PIRTYNQPFCQDEVS.TTIS..TIRQAttmysCNQ.vFQFQSIFFQC...................
C5YEJ4_SORBI/37-116                 .....SYLTSWGGPGCTssgkkG.H.IASAGSCGCN..HIR...FH...GGHEFNF.RGE...TATLYTEPGCAGTPY.QVFE..DT-QA.....CGD..FGWRSIHIDC...................
D8SEX3_SELML/24-98                  .....SYFDAWAGPGCN.....N.W.LERYRACGCTnvGAS...QH...GGYSVAY.LGH...AAAAYNTANCQGVAQ.RWFR..---RH.....CSG..FRWNSIFIQC...................
#=GC seq_cons                       .....SahssWuGPGCs.....s.c.ht+huuCGCo..shs...h+...GGacFsa.pGp...TAshYspssCpGssh.phFp..ss.Qs.....Cus..FGWpSh.IpC...................
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