GenomeNet

Database: Pfam
Entry: MiAMP1
LinkDB: MiAMP1
Original site: MiAMP1 
#=GF ID   MiAMP1
#=GF AC   PF09117.9
#=GF DE   MiAMP1
#=GF AU   Sammut SJ
#=GF SE   pdb_1c01
#=GF GA   21.80 21.80;
#=GF TC   23.60 24.80;
#=GF NC   21.10 20.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   10543955
#=GF RT   MiAMP1, a novel protein from Macadamia integrifolia adopts a
#=GF RT   Greek key beta-barrel fold unique amongst plant antimicrobial
#=GF RT   proteins. 
#=GF RA   McManus AM, Nielsen KJ, Marcus JP, Harrison SJ, Green JL,
#=GF RA   Manners JM, Craik DJ; 
#=GF RL   J Mol Biol. 1999;293:629-638.
#=GF DR   INTERPRO; IPR015201;
#=GF DR   SCOP; 1c01; fa;
#=GF CC   MiAMP1 is a highly basic protein from the nut kernel of
#=GF CC   Macadamia integrifolia which inhibits the growth of several
#=GF CC   microbial plant pathogens in vitro while having no effect on
#=GF CC   mammalian or plant cells. It consists of eight beta-strands
#=GF CC   which are arranged in two Greek key motifs. These Greek key
#=GF CC   motifs then associate to form a Greek key beta-barrel [1].
#=GF SQ   32
#=GS W1PA47_AMBTC/23-98       AC W1PA47.1
#=GS A1C8X8_ASPCL/16-97       AC A1C8X8.1
#=GS A0A096TRQ6_MAIZE/41-115  AC A0A096TRQ6.1
#=GS A0A096S4P8_MAIZE/39-116  AC A0A096S4P8.1
#=GS A1DAA4_NEOFI/16-96       AC A1DAA4.1
#=GS D8SEX8_SELML/7-84        AC D8SEX8.1
#=GS I1J0X4_BRADI/23-100      AC I1J0X4.1
#=GS A0A0K8LD30_9EURO/16-97   AC A0A0K8LD30.1
#=GS D8SEX7_SELML/24-101      AC D8SEX7.1
#=GS D8SHV4_SELML/5-79        AC D8SHV4.1
#=GS D8SEX4_SELML/20-97       AC D8SEX4.1
#=GS D8TDT8_SELML/26-103      AC D8TDT8.1
#=GS W5BA18_WHEAT/23-97       AC W5BA18.1
#=GS K3YCJ0_SETIT/42-120      AC K3YCJ0.1
#=GS D8SHW0_SELML/24-72       AC D8SHW0.1
#=GS C4JS23_UNCRE/16-93       AC C4JS23.1
#=GS D8SEX2_SELML/7-84        AC D8SEX2.1
#=GS A0A0K9XM69_9ACTN/40-117  AC A0A0K9XM69.1
#=GS D8SHV7_SELML/24-73       AC D8SHV7.1
#=GS W1PCM8_AMBTC/29-104      AC W1PCM8.1
#=GS K3YCT3_SETIT/30-104      AC K3YCT3.1
#=GS Q4WB16_ASPFU/16-96       AC Q4WB16.2
#=GS A0A0S7E3S9_9EURO/16-96   AC A0A0S7E3S9.1
#=GS D8SEX5_SELML/24-101      AC D8SEX5.1
#=GS C5YEJ2_SORBI/38-112      AC C5YEJ2.1
#=GS D8R277_SELML/25-108      AC D8R277.1
#=GS W5ARA3_WHEAT/23-97       AC W5ARA3.1
#=GS D8SF19_SELML/7-84        AC D8SF19.1
#=GS D8RFF7_SELML/11-74       AC D8RFF7.1
#=GS K3YBS0_SETIT/62-118      AC K3YBS0.1
#=GS D8QT03_SELML/20-103      AC D8QT03.1
#=GS D8SEX3_SELML/24-98       AC D8SEX3.1
W1PA47_AMBTC/23-98                  .....SSLTVWAGPGCN....N.R.A.ERYSKCGCS..GIH...LK...GGYEFVY.NGQ...TAALYNQPDCKGVA.HTRFG..SGARS.....CNA..FGWKSMFIQC......................
A1C8X8_ASPCL/16-97                  tivyp-----YTSASCG...vS.T.V.GKITSCGCTnmGAN...YK..iTGAKLDF.QKA...TAPFYQGKDCKGAFiSKALD..---QS.....CVElpVGWSS-----fgsvkih...............
A0A096TRQ6_MAIZE/41-115             .....SSLTTWSAAGCS....G.D.T.SIVGSCGCT..DLA...FY...AGQEFYY.RGE...TATLYTGTGCTGTP.YQVFE..DT-QA.....CGD..FGWRSINIDC......................
A0A096S4P8_MAIZE/39-116             .....SYLTSWGGPGCTtgtkG.H.I.ASAGSCGCN..HLR...FH...GGHEFNF.RGE...TATLYSQPGCVGTP.YQVFE..DT-QA.....CGD..FGWHRVNI--l.....................
A1DAA4_NEOFI/16-96                  tivyp-----YTSASCG....G.EtV.GKITSCGCT..NMS...RNykiKGAKLNF.QKA...TASFYKGRDCEGVR.ISKAS..D--QT.....CVKlpVGWES-----fgsvri................
D8SEX8_SELML/7-84                   .....SYFDAWAGPGCN....N.R.L.ERYSACGCTnvGAS...QH...GGYSFAY.QGQ...TAAAYNTANCQGVA.HTRFS..GSVQD.....CSG..FGWNSFFIQC......................
I1J0X4_BRADI/23-100                 .....SYLTSWDGPACTt.nsG.R.M.SSVGTCGCS..PVR...FH...GGHEFNY.RGE...TATLYSEHGCAGTP.YQVFE..DT-QA.....CGD..FGWRSIHIDC......................
A0A0K8LD30_9EURO/16-97              tivyp-----YTSASCG....G.DyV.GRITACGCT..NMN...RNydiKGIKLDF.QRA...TASFYKGRDCQGVR.ISKAS..D--QT.....CVHlpVGWES-----fgsvnih...............
D8SEX7_SELML/24-101                 .....SYFDTWAGPGCN....N.R.L.ERYSACGCTnvGAS...QH...GGYSFGY.QGQ...TAAAYNTANCQGVA.HTRFS..GSVQD.....CSG..FGWNSFFIQC......................
D8SHV4_SELML/5-79                   .....SYFDAWAGPGGN....N.R.L.ERYRACGCTnvGAS...QH...GGYSVVY.LGH...AAAAYNTANCQGVA.QRWFR..---RH.....CSG..FRWNSIFIQC......................
D8SEX4_SELML/20-97                  .....SYFDTWAGPGCN....N.Q.R.VRYSACGCTnvGAS...QH...GGYSFGY.QGQ...TAAAYNTANCQGVA.QTRFS..ASVQD.....CSG..FGWNSFFIQC......................
D8TDT8_SELML/26-103                 .....STFVTFQSPDCT....N.R.V.-LVTRCGCN..NLD...AS...VGYGFEW.HKQresTANLYNQPDCKGSP.HTSLD..SSVSA.....CGP..IGWKSIEISC......................
W5BA18_WHEAT/23-97                  .....SYFSSWDGPACT....G.R.M.SSAGSCGCS..PVH...FH...GGHEFNF.RGE...TATLYSEHGCAGTP.YQVFE..DT-QA.....CGD..FGWRSIHIDC......................
K3YCJ0_SETIT/42-120                 .....SYLTSWGGPGCTpgeqG.H.M.ASVGSCGCN..HVR...FH...GGHEFNF.RGE...KATLYPKPGCAGTP.YEVFE..DT-RA.....CGD..FGWHSIHIDC......................
D8SHW0_SELML/24-72                  .....SYFDAWAGPGCN....N.R.L.ERYSACGCT..NVG...AS...-------.---...--------------.-----..-----.....---..----------rarllrpttrqtakvwrrhg..
C4JS23_UNCRE/16-93                  tivyp-----YESSSCR....GsS.V.GRISACGCT..NMG...ANydiRAVKLNF.QQA...TASFYKEKNCVGVR.FSKAS..D--QS.....CAKppVGWGTI----gs....................
D8SEX2_SELML/7-84                   .....SFFDAWAGPGCN....N.V.L.ERYSACGCTnvRAS...QH...GGYSFVY.QGQ...TAAAYNTANCRGVA.HTRFS..RSVQD.....CSG..FGWNSFFIQC......................
A0A0K9XM69_9ACTN/40-117             .....SSFVAYEGTSFS....G.R.S.ADINGCGFH..QIP...FH...GSYKWVP.RGQ...DGRMHNAADGRDPV.HTVLR..SNRDAe...qSTP..FGWQSLYIVC......................
D8SHV7_SELML/24-73                  .....SYFDAWAGPGCN....N.R.L.ERYSACGCT..NVG...A-...-------.---...--------------.-----..-----.....---..----------srarllrpttwqtakvwrrhgl
W1PCM8_AMBTC/29-104                 .....SHFTVWAGPGCN....N.R.A.ERVSKCGCS..AIK...QK...GGYQFVY.TGQ...TAALYNQGNCQGVA.HTRFG..SGASS.....CSA..FGWRSIFIQC......................
K3YCT3_SETIT/30-104                 .....SHLTSWAGPGCS....G.Q.T.AIAGSCGCS..NLQ...FY...DGQEKSY.QGQ...TARLYTETGCAGTS.YLVFE..DT-QA.....CGD..FGWRSISIDC......................
Q4WB16_ASPFU/16-96                  tivyp-----YTSASCS....G.StV.GKITSCGCT..NMSgnyKI...KGAKLDF.QKA...TASFYKGRNCEGVR.ISKAS..--DQS.....CVKlpVGWES-----fgsvri................
A0A0S7E3S9_9EURO/16-96              tivyp-----FTSASCG....G.D.TvGKITSCGCT..NMS...RNykiKGAKLDF.QKA...TASFYKGRDCEGVR.IS--K..DSDQR.....CVKlpVGWES-----fgsvri................
D8SEX5_SELML/24-101                 .....SYFDTWAGPGCN....N.Q.R.VRYSACGCTnvGAS...QH...GGYSFGY.QGQ...TAAAYNTANCQGVA.QTRFS..ASVQD.....CSG..FGWNSFFIQC......................
C5YEJ2_SORBI/38-112                 .....SSLTTWSGADCS....G.D.T.STIGACGCT..DLV...FY...AGQEFYY.RGQ...TATLYTGTGCAGTP.YQVFE..DT-QA.....CGD..FGWRSINIHC......................
D8R277_SELML/25-108                 .....SYFDVYLGPGCH....N.D.M.QHYSVCGCLniHPS...YH...GGFKFVY.EGQ...RIRTFNQPFCQDEV.STIIS..TIREAttmysCNQ.vFQFQSIFFQC......................
W5ARA3_WHEAT/23-97                  .....SYFSSWDGPACT....G.R.M.SSAGTCGCS..PVH...FH...GGHEFNF.RGE...TATLYSEHGCAGTP.YQVFE..DT-QA.....CGD..FGWRSIHIDC......................
D8SF19_SELML/7-84                   .....SFFDAWAGPGCN....N.R.L.ERYRACGCNnvGAS...QH...GGYSFAY.QGQ...TAAAYNTANCRGVA.HTRFS..SSVQD.....CSG..FGWRSIFIQC......................
D8RFF7_SELML/11-74                  .....SYLDTYSGLHCD....K.N.T.RRYDSCGCNniDFK...QQ...KGYKFVYtNGQ...SATAYSGTRCQKRA.GVSFD..-----.....---..----------rnd...................
K3YBS0_SETIT/62-118                 rvlrs------------....-.-.-.---------..DLQ...FY...GGQDF--.QGE...TATFYTETGCAGTP.YQVIGgfEGTQF.....CGD..FGWRSINIDC......................
D8QT03_SELML/20-103                 .....SYFDVYFGPGCH....N.D.M.QHYSVCGCLniHPS...YH...GGFKFVY.EGQ...PIRTYNQPFCQDEV.STTIS..TIRQAttmysCNQ.vFQFQSIFFQC......................
D8SEX3_SELML/24-98                  .....SYFDAWAGPGCN....N.W.L.ERYRACGCTnvGAS...QH...GGYSVAY.LGH...AAAAYNTANCQGVA.QRWFR..---RH.....CSG..FRWNSIFIQC......................
#=GC seq_cons                       .....SahssWsGPuCs....s.c.h.t+huuCGCo..shs...ha...uGacFsa.pGp...TAshYspssCpGss.hphhp..ss.Qs.....Cus..FGWpSh.IpC......................
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