#=GF ID PAS_3
#=GF AC PF08447.6
#=GF DE PAS fold
#=GF AU Bateman A
#=GF SE Pfam-B_64 (Release 18.0)
#=GF GA 25.60 25.60;
#=GF TC 25.60 25.60;
#=GF NC 25.50 25.50;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Domain
#=GF WK PAS domain
#=GF RN [1]
#=GF RM 9301332
#=GF RT PAS domain S-boxes in archaea, bacteria and sensors for oxygen
#=GF RT and redox.
#=GF RA Zhulin IB, Taylor BL, Dixon R;
#=GF RL Trends Biochem Sci 1997;22:331-333.
#=GF RN [2]
#=GF RM 7756254
#=GF RT 1.4 A structure of photoactive yellow protein, a cytosolic
#=GF RT photoreceptor: unusual fold, active site, and chromophore.
#=GF RA Borgstahl GE, Williams DR, Getzoff ED;
#=GF RL Biochemistry 1995;34:6278-6287.
#=GF RN [3]
#=GF RM 9382818
#=GF RT PAS: a multifunctional domain family comes to light.
#=GF RA Ponting CP, Aravind L;
#=GF RL Curr Biol 1997;7:674-677.
#=GF RN [4]
#=GF RM 15009198
#=GF RT The PAS fold: a redefination of the PAS domain based upon
#=GF RT structural prediction.
#=GF RA Hefti MH, Francoijs KJ, de Vries SC, Dixon R, Vervoort J;
#=GF RL Eur J Biochem 2004;271:1198-1208.
#=GF DR INTERPRO; IPR013655;
#=GF DR SCOP; 2phy; fa;
#=GF DR SMART; PAS;
#=GF DR HOMSTRAD; PAS;
#=GF CC The PAS fold corresponds to the structural domain that has
#=GF CC previously been defined as PAS and PAC motifs [4]. The PAS fold
#=GF CC appears in archaea, eubacteria and eukarya.
#=GF SQ 12998
#=GS Q3K458_PSEPF/26-111 AC Q3K458.1
#=GS A5LHG0_PHACA/291-375 AC A5LHG0.1
#=GS G1RUD0_NOMLE/242-329 AC G1RUD0.1
#=GS A3JA31_9ALTE/1-80 AC A3JA31.1
#=GS A9FJB8_SORC5/30-112 AC A9FJB8.1
#=GS B1XLU7_SYNP2/815-902 AC B1XLU7.1
#=GS G6G313_9FIRM/299-385 AC G6G313.1
#=GS Q8XT61_RALSO/408-483 AC Q8XT61.1
#=GS B1C7S8_9FIRM/174-257 AC B1C7S8.1
#=GS Q8YQQ2_NOSS1/118-203 AC Q8YQQ2.1
#=GS H8YXS5_9GAMM/638-723 AC H8YXS5.1
#=GS E6YY68_BARSR/423-513 AC E6YY68.1
#=GS F3C7W6_PSESG/302-389 AC F3C7W6.1
#=GS A3PRE8_RHOS1/433-518 AC A3PRE8.1
#=GS G2ZLA8_9RALS/308-396 AC G2ZLA8.1
#=GS G8X564_FLACA/33-118 AC G8X564.1
#=GS A0YS29_LYNSP/185-273 AC A0YS29.1
#=GS Q8F245_LEPIN/29-110 AC Q8F245.2
#=GS B7KQ06_METC4/327-412 AC B7KQ06.1
#=GS D8FY11_9CYAN/641-731 AC D8FY11.1
#=GS H1XQ64_9BACT/431-518 AC H1XQ64.1
#=GS F0EBQ8_9PSED/165-254 AC F0EBQ8.1
#=GS E9X267_ECOLX/451-537 AC E9X267.1
#=GS A3RNR5_RALSL/194-284 AC A3RNR5.1
#=GS A3QAV6_SHELP/165-253 AC A3QAV6.1
#=GS G4K7W8_9RHIZ/393-483 AC G4K7W8.1
#=GS F4BQC0_CARS1/52-144 AC F4BQC0.1
#=GS A9AWC7_HERA2/194-282 AC A9AWC7.1
#=GS F8FYR5_PSEPU/165-254 AC F8FYR5.1
#=GS G5EAY0_EMENI/77-159 AC G5EAY0.1
#=GS B0SFL7_LEPBA/154-242 AC B0SFL7.1
#=GS D8NG57_RALSL/523-610 AC D8NG57.1
#=GS Q47N53_THEFY/171-254 AC Q47N53.1
#=GS E1T7C1_BURSG/171-257 AC E1T7C1.1
#=GS H8I455_METCZ/664-753 AC H8I455.1
#=GS Q2JZU6_RHIEC/26-115 AC Q2JZU6.1
#=GS C0CYH4_9CLOT/167-253 AC C0CYH4.1
#=GS G3IVE1_9GAMM/497-583 AC G3IVE1.1
#=GS F0RN45_DEIPM/40-125 AC F0RN45.1
#=GS Q3A7T5_PELCD/319-404 AC Q3A7T5.1
#=GS Q18IA7_HALWD/294-382 AC Q18IA7.1
#=GS O66446_AQUAE/1-37 AC O66446.1
#=GS B9M9P6_GEOSF/151-239 AC B9M9P6.1
#=GS D7DYQ3_NOSA0/542-627 AC D7DYQ3.1
#=GS F9UB11_9GAMM/453-542 AC F9UB11.1
#=GS F2NBW1_DESAR/837-927 AC F2NBW1.1
#=GS G6HQ58_9ACTO/254-332 AC G6HQ58.1
#=GS A5IAF0_LEGPC/88-172 AC A5IAF0.1
#=GS F3J3L3_PSEAP/45-132 AC F3J3L3.1
#=GS A9AZL7_HERA2/721-806 AC A9AZL7.1
#=GS H0SDN2_9BRAD/269-357 AC H0SDN2.1
#=GS B8IC46_METNO/329-415 AC B8IC46.1
#=GS C7XDJ6_9PORP/430-506 AC C7XDJ6.1
#=GS E9TE79_ECOLX/243-329 AC E9TE79.1
#=GS E7GKU9_CLOSY/640-729 AC E7GKU9.1
#=GS Q3MH46_ANAVT/350-435 AC Q3MH46.1
#=GS C9YMD2_CLODR/346-435 AC C9YMD2.1
#=GS G2WVI0_VERDV/662-745 AC G2WVI0.1
#=GS G6FZW4_9CYAN/324-411 AC G6FZW4.1
#=GS H0J782_9PSED/454-544 AC H0J782.1
#=GS D2QEH0_SPILD/53-139 AC D2QEH0.1
#=GS H1EG84_ECOLX/451-537 AC H1EG84.1
#=GS C3X511_OXAFO/1431-1498 AC C3X511.1
#=GS D8NDU9_RALSL/469-551 AC D8NDU9.1
#=GS Q8YSG5_NOSS1/587-676 AC Q8YSG5.1
#=GS H0V916_CAVPO/348-435 AC H0V916.1
#=GS D0HAU8_VIBMI/31-116 AC D0HAU8.1
#=GS A7I7Q1_METB6/15-104 AC A7I7Q1.1
#=GS G8QIV9_AZOSU/434-519 AC G8QIV9.1
#=GS B9Y5L2_9FIRM/352-444 AC B9Y5L2.1
#=GS C3X4C3_OXAFO/255-342 AC C3X4C3.1
#=GS I1ACD4_PSEAI/475-562 AC I1ACD4.1
#=GS F5JIH7_9RHIZ/37-129 AC F5JIH7.1
#=GS Q5UW88_HALMA/1058-1144 AC Q5UW88.1
#=GS C9PI56_VIBFU/25-111 AC C9PI56.1
#=GS F7UUS6_EEGSY/621-709 AC F7UUS6.1
#=GS B0UHL1_METS4/188-274 AC B0UHL1.1
#=GS F3ETS3_9PSED/84-176 AC F3ETS3.1
#=GS Q12XN1_METBU/423-511 AC Q12XN1.1
#=GS E5B5P2_ERWAM/453-539 AC E5B5P2.1
#=GS B5EGR2_GEOBB/159-247 AC B5EGR2.1
#=GS E1XYW0_LEGPN/168-255 AC E1XYW0.1
#=GS Q5V1A8_HALMA/291-374 AC Q5V1A8.1
#=GS G6X1D6_MYCAB/12-99 AC G6X1D6.1
#=GS B8HS57_CYAP4/633-722 AC B8HS57.1
#=GS Q1NIJ8_9DELT/86-175 AC Q1NIJ8.1
#=GS H5L887_ECOLX/451-537 AC H5L887.1
#=GS A3L087_PSEAI/74-164 AC A3L087.1
#=GS Q88HE6_PSEPK/167-254 AC Q88HE6.1
#=GS Q72EW9_DESVH/1019-1103 AC Q72EW9.1
#=GS E3IQ59_DESVR/471-542 AC E3IQ59.1
#=GS B9LC34_CHLSY/39-127 AC B9LC34.1
#=GS E7CH10_GIBMO/123-199 AC E7CH10.1
#=GS G4DPL9_9GAMM/67-135 AC G4DPL9.1
#=GS G9PU36_9BACT/688-776 AC G9PU36.1
#=GS H0RWT1_9BRAD/387-477 AC H0RWT1.1
#=GS C7RTE0_ACCPU/161-250 AC C7RTE0.1
#=GS Q4KER3_PSEF5/151-238 AC Q4KER3.1
#=GS B1M9N2_METRJ/64-153 AC B1M9N2.1
#=GS C7QWH5_CYAP0/605-692 AC C7QWH5.1
#=GS C0PUB9_SALSA/1-83 AC C0PUB9.1
#=GS A1ZWH5_9BACT/385-473 AC A1ZWH5.1
#=GS B8GSM8_THISH/520-607 AC B8GSM8.1
#=GS H1AR43_9FIRM/46-125 AC H1AR43.1
#=GS F0IC17_9FLAO/27-112 AC F0IC17.1
#=GS G8AIF5_AZOBR/255-344 AC G8AIF5.1
#=GS C3X3P6_OXAFO/326-415 AC C3X3P6.1
#=GS E8RHY0_DESPD/481-568 AC E8RHY0.1
#=GS D9Y0P2_9ACTO/39-128 AC D9Y0P2.1
#=GS Q3J1Y6_RHOS4/162-248 AC Q3J1Y6.1
#=GS A9L5B7_SHEB9/845-926 AC A9L5B7.1
#=GS C0QQF1_PERMH/269-357 AC C0QQF1.1
#=GS C6E018_GEOSM/32-118 AC C6E018.1
#=GS F3LVP0_9BURK/55-141 AC F3LVP0.1
#=GS E8WKI9_GEOS8/451-539 AC E8WKI9.1
#=GS C4SQN5_YERFR/192-282 AC C4SQN5.1
#=GS G0LN04_HALWC/292-381 AC G0LN04.1
#=GS G4DC00_9GAMM/677-765 AC G4DC00.1
#=GS E3RNG8_PYRTT/585-669 AC E3RNG8.1
#=GS E4W2F9_BACFG/164-253 AC E4W2F9.1
#=GS Q46B59_METBF/677-764 AC Q46B59.1
#=GS H4Q5W6_ECOLX/30-115 AC H4Q5W6.1
#=GS F7NVY0_9GAMM/562-647 AC F7NVY0.1
#=GS E5KK12_9EURY/693-783 AC E5KK12.1
#=GS H1WEE9_9CYAN/219-308 AC H1WEE9.1
#=GS E0U948_CYAP2/52-141 AC E0U948.1
#=GS H4ZYF2_ECOLX/451-537 AC H4ZYF2.1
#=GS G2H7H4_9DELT/227-317 AC G2H7H4.1
#=GS B8HKH1_CYAP4/205-293 AC B8HKH1.1
#=GS Q8G1T8_BRUSU/279-364 AC Q8G1T8.1
#=GS F7EJW9_MACMU/346-431 AC F7EJW9.1
#=GS F7HC48_CALJA/343-430 AC F7HC48.1
#=GS H0PYF2_9RHOO/311-397 AC H0PYF2.1
#=GS D4JW02_9FIRM/198-276 AC D4JW02.1
#=GS Q4KIV4_PSEF5/457-541 AC Q4KIV4.2
#=GS H4TTA6_ECOLX/30-115 AC H4TTA6.1
#=GS E4TUS1_MARTH/29-110 AC E4TUS1.1
#=GS Q07ZS0_SHEFN/32-122 AC Q07ZS0.1
#=GS D5QTN3_METTR/189-277 AC D5QTN3.1
#=GS B7K4M3_CYAP8/171-263 AC B7K4M3.1
#=GS A3WTL6_9BRAD/446-535 AC A3WTL6.1
#=GS A4G434_HERAR/53-142 AC A4G434.1
#=GS B9Y3Y9_9FIRM/171-259 AC B9Y3Y9.1
#=GS A5ZIV3_9BACE/292-380 AC A5ZIV3.1
#=GS H2RPZ2_TAKRU/242-329 AC H2RPZ2.1
#=GS A6C319_9PLAN/189-279 AC A6C319.1
#=GS H1MZ72_9PLAN/27-113 AC H1MZ72.1
#=GS A4C9D0_9GAMM/850-935 AC A4C9D0.1
#=GS D4HWP4_ERWAC/326-413 AC D4HWP4.1
#=GS F3M7M8_9BACL/275-362 AC F3M7M8.1
#=GS A4C531_9GAMM/186-275 AC A4C531.1
#=GS D8IWV3_HERSS/185-273 AC D8IWV3.1
#=GS B9XPI7_9BACT/267-355 AC B9XPI7.1
#=GS C4XKH6_DESMR/378-463 AC C4XKH6.1
#=GS Q8PTE2_METMA/222-309 AC Q8PTE2.1
#=GS E1RWU8_ECOUM/30-115 AC E1RWU8.1
#=GS A4YPC2_BRASO/349-436 AC A4YPC2.1
#=GS A6S501_BOTFB/9-91 AC A6S501.1
#=GS A3QFN9_SHELP/795-867 AC A3QFN9.1
#=GS F0T626_METSL/175-250 AC F0T626.1
#=GS H7EUA5_PSEST/332-419 AC H7EUA5.1
#=GS F6D0G4_MARPP/140-230 AC F6D0G4.1
#=GS I0K5L9_9BACT/72-155 AC I0K5L9.1
#=GS D2R4X7_PIRSD/232-319 AC D2R4X7.1
#=GS E4QPD0_METS6/46-133 AC E4QPD0.1
#=GS C4WQB7_9RHIZ/816-907 AC C4WQB7.1
#=GS F5UJC3_9CYAN/895-977 AC F5UJC3.1
#=GS G7QFX3_LEPII/30-109 AC G7QFX3.1
#=GS D5S2M6_CLODI/676-760 AC D5S2M6.1
#=GS A5W088_PSEP1/43-128 AC A5W088.1
#=GS E1YXH6_9BACE/447-523 AC E1YXH6.1
#=GS F6G916_RALS8/154-244 AC F6G916.1
#=GS C7RPS9_ACCPU/679-762 AC C7RPS9.1
#=GS D8FYT0_9CYAN/352-441 AC D8FYT0.1
#=GS E6WZF7_NITSE/35-123 AC E6WZF7.1
#=GS E6XP92_SHEP2/277-367 AC E6XP92.1
#=GS D6TQ87_9CHLR/295-383 AC D6TQ87.1
#=GS Q9AAL1_CAUCR/236-325 AC Q9AAL1.1
#=GS F7XL59_METZD/275-349 AC F7XL59.1
#=GS G4E2F1_9GAMM/470-556 AC G4E2F1.1
#=GS Q0FXH0_9RHIZ/168-257 AC Q0FXH0.1
#=GS C7LQZ9_DESBD/338-428 AC C7LQZ9.1
#=GS A8RR33_9CLOT/61-131 AC A8RR33.1
#=GS I1E2G1_9GAMM/31-116 AC I1E2G1.1
#=GS B8HYG0_CYAP4/587-677 AC B8HYG0.1
#=GS B1ZBV2_METPB/474-561 AC B1ZBV2.1
#=GS Q315P5_DESDG/54-138 AC Q315P5.1
#=GS B2T286_BURPP/205-293 AC B2T286.1
#=GS F5UIB5_9CYAN/1062-1144 AC F5UIB5.1
#=GS Q8TPA1_METAC/331-418 AC Q8TPA1.1
#=GS Q3KF26_PSEPF/52-140 AC Q3KF26.1
#=GS C7SHV9_GAVIM/87-172 AC C7SHV9.1
#=GS E3CYK3_9BACT/224-314 AC E3CYK3.1
#=GS H1W8W8_9CYAN/949-1037 AC H1W8W8.1
#=GS H1KK85_METEX/46-133 AC H1KK85.1
#=GS G3TEX6_LOXAF/278-362 AC G3TEX6.1
#=GS Q2G4X1_NOVAD/153-239 AC Q2G4X1.1
#=GS Q4ZNN3_PSEU2/111-203 AC Q4ZNN3.1
#=GS F5UMN5_9CYAN/264-356 AC F5UMN5.1
#=GS Q76EQ6_PHONG/290-375 AC Q76EQ6.1
#=GS F8H7L4_PSEUT/305-383 AC F8H7L4.1
#=GS B7K8A3_CYAP7/185-274 AC B7K8A3.1
#=GS G8MNL1_9BURK/1000-1082 AC G8MNL1.1
#=GS A6CEY2_9PLAN/1162-1247 AC A6CEY2.1
#=GS D4GWW5_HALVD/377-458 AC D4GWW5.1
#=GS F7RVJ5_9GAMM/459-548 AC F7RVJ5.1
#=GS E2XQ65_PSEFL/246-338 AC E2XQ65.1
#=GS G1V1B9_9DELT/149-240 AC G1V1B9.1
#=GS E6YQ14_9RHIZ/280-365 AC E6YQ14.1
#=GS C6B0P6_RHILS/178-265 AC C6B0P6.1
#=GS Q6DLX3_MOUSE/291-377 AC Q6DLX3.1
#=GS E6T162_SHEB6/353-443 AC E6T162.1
#=GS F6AI68_PSEF1/477-564 AC F6AI68.1
#=GS H1YJ35_9GAMM/277-367 AC H1YJ35.1
#=GS D0S1X9_ACICA/309-382 AC D0S1X9.1
#=GS Q5P6E5_AROAE/272-361 AC Q5P6E5.1
#=GS H4MBC6_ECOLX/281-367 AC H4MBC6.1
#=GS Q8YLM6_NOSS1/60-145 AC Q8YLM6.1
#=GS O15984_BOMMO/359-447 AC O15984.1
#=GS B4VKU2_9CYAN/694-782 AC B4VKU2.1
#=GS E4LRN2_9CLOT/209-297 AC E4LRN2.1
#=GS F3JL36_PSESX/30-115 AC F3JL36.1
#=GS D9SDN5_GALCS/174-263 AC D9SDN5.1
#=GS B3EJ88_CHLPB/34-124 AC B3EJ88.1
#=GS B0SM70_LEPBP/439-525 AC B0SM70.1
#=GS H4RH61_ECOLX/281-367 AC H4RH61.1
#=GS H3BFZ4_LATCH/99-186 AC H3BFZ4.1
#=GS D8J0E6_HERSS/203-293 AC D8J0E6.1
#=GS A6C251_9PLAN/1954-2046 AC A6C251.1
#=GS H3B852_LATCH/242-329 AC H3B852.1
#=GS H1Y0T6_9SPHI/161-250 AC H1Y0T6.1
#=GS Q15TM1_PSEA6/457-543 AC Q15TM1.1
#=GS B5EES8_GEOBB/96-184 AC B5EES8.1
#=GS D4Z759_SPHJU/165-250 AC D4Z759.1
#=GS C1CV04_DEIDV/486-565 AC C1CV04.1
#=GS B3I2U4_ECOLX/451-537 AC B3I2U4.1
#=GS A0YJW5_LYNSP/721-806 AC A0YJW5.1
#=GS G7DIH3_BRAJP/419-508 AC G7DIH3.1
#=GS Q3B4C7_PELLD/401-489 AC Q3B4C7.1
#=GS Q7NND9_GLOVI/27-113 AC Q7NND9.1
#=GS C6H2N4_AJECH/140-218 AC C6H2N4.1
#=GS G9QYA7_9FIRM/626-715 AC G9QYA7.1
#=GS A9D412_9RHIZ/280-367 AC A9D412.1
#=GS Q7NF64_GLOVI/29-113 AC Q7NF64.1
#=GS Q4ZVJ6_PSEU2/441-531 AC Q4ZVJ6.1
#=GS C6WTL1_METML/308-398 AC C6WTL1.1
#=GS F4BU67_METCG/669-757 AC F4BU67.1
#=GS E8WTF4_GEOS8/399-488 AC E8WTF4.1
#=GS H1MY03_9PLAN/879-966 AC H1MY03.1
#=GS E6T420_SHEB6/605-695 AC E6T420.1
#=GS A4U0T5_9PROT/350-428 AC A4U0T5.1
#=GS B5WB58_9BURK/260-348 AC B5WB58.1
#=GS E8HWM1_ECOLX/76-162 AC E8HWM1.1
#=GS A0YMD3_LYNSP/390-477 AC A0YMD3.1
#=GS D0FZF5_9MURI/295-381 AC D0FZF5.1
#=GS D6TV15_9CHLR/405-492 AC D6TV15.1
#=GS G2A1Y2_ECOLX/451-537 AC G2A1Y2.1
#=GS C6AVN5_RHILS/168-253 AC C6AVN5.1
#=GS Q8DKI3_THEEB/382-467 AC Q8DKI3.1
#=GS D5S234_CLODI/177-266 AC D5S234.1
#=GS F3JW92_PSESZ/246-336 AC F3JW92.1
#=GS H0QUE2_ARTGO/285-372 AC H0QUE2.1
#=GS Q4KBF9_PSEF5/30-115 AC Q4KBF9.1
#=GS A0YLU5_LYNSP/290-376 AC A0YLU5.1
#=GS D3BD44_POLPA/481-553 AC D3BD44.1
#=GS H1P387_9BACT/888-973 AC H1P387.1
#=GS B8HUG4_CYAP4/38-117 AC B8HUG4.1
#=GS G5FGF7_9CLOT/158-247 AC G5FGF7.1
#=GS D6SLB4_9DELT/428-515 AC D6SLB4.1
#=GS G0B5X0_SERSA/1522-1609 AC G0B5X0.1
#=GS A9DDZ3_9RHIZ/209-297 AC A9DDZ3.1
#=GS A4JR91_BURVG/336-423 AC A4JR91.1
#=GS D7J2W0_9BACE/169-260 AC D7J2W0.1
#=GS Q7NUQ4_CHRVO/432-519 AC Q7NUQ4.1
#=GS F3K5I2_PSESZ/48-138 AC F3K5I2.1
#=GS D6TUY2_9CHLR/277-364 AC D6TUY2.1
#=GS F9ZVU6_METMM/301-385 AC F9ZVU6.1
#=GS A7BRU5_9GAMM/175-263 AC A7BRU5.1
#=GS Q8Z0B6_NOSS1/216-302 AC Q8Z0B6.1
#=GS I1BSJ3_RHIO9/52-135 AC I1BSJ3.1
#=GS Q6N829_RHOPA/329-415 AC Q6N829.1
#=GS B4WC56_9CAUL/598-683 AC B4WC56.1
#=GS D2R8R4_PIRSD/424-511 AC D2R8R4.1
#=GS B7K0E1_CYAP8/166-251 AC B7K0E1.1
#=GS D4XP92_ACIHA/308-384 AC D4XP92.1
#=GS H1G018_9GAMM/690-778 AC H1G018.1
#=GS D9QF52_BRESC/427-516 AC D9QF52.1
#=GS Q3AQD1_CHLCH/289-377 AC Q3AQD1.1
#=GS B9LXG8_HALLT/38-116 AC B9LXG8.1
#=GS F5K0C4_PSEAI/335-418 AC F5K0C4.1
#=GS B9LXG6_HALLT/532-622 AC B9LXG6.1
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#=G
