#=GF ID Sigma54_activat
#=GF AC PF00158.21
#=GF DE Sigma-54 interaction domain
#=GF PI sigma54;
#=GF AU Sonnhammer ELL
#=GF SE Prosite
#=GF GA 20.20 20.20;
#=GF TC 20.20 20.20;
#=GF NC 20.10 20.10;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Domain
#=GF RN [1]
#=GF RM 11544185
#=GF RT Binding of transcriptional activators to sigma 54 in the
#=GF RT presence of the transition state analog ADP-aluminum fluoride:
#=GF RT insights into activator mechanochemical action.
#=GF RA Chaney M, Grande R, Wigneshweraraj SR, Cannon W, Casaz P,
#=GF RA Gallegos MT, Schumacher J, Jones S, Elderkin S, Dago AE, Morett
#=GF RA E, Buck M;
#=GF RL Genes Dev 2001;15:2282-2294.
#=GF RN [2]
#=GF RM 12618438
#=GF RT Domain Architectures of sigma(54)-Dependent Transcriptional
#=GF RT Activators.
#=GF RA Studholme DJ, Dixon R;
#=GF RL J Bacteriol 2003;185:1757-1767.
#=GF DR INTERPRO; IPR002078;
#=GF DR PROSITE; PDOC00579;
#=GF DR SCOP; 1l5z; fa;
#=GF SQ 23376
#=GS D3UP10_LISSS/82-254 AC D3UP10.1
#=GS Q1LMF9_RALME/231-398 AC Q1LMF9.1
#=GS C5JB09_9BACT/24-191 AC C5JB09.1
#=GS G7QCE3_9DELT/138-305 AC G7QCE3.1
#=GS F3WHM4_SHIBO/206-366 AC F3WHM4.1
#=GS G4DRB6_9GAMM/216-383 AC G4DRB6.1
#=GS F3I4V6_PSESF/136-303 AC F3I4V6.1
#=GS G1V5Q2_9DELT/340-501 AC G1V5Q2.1
#=GS C5UR66_CLOBO/267-435 AC C5UR66.1
#=GS I0KF59_9BACT/150-317 AC I0KF59.1
#=GS B0QH75_BACAN/369-537 AC B0QH75.1
#=GS H5CKH3_ECOLX/8-175 AC H5CKH3.1
#=GS D2XIS5_9BACT/140-307 AC D2XIS5.1
#=GS G1V3L1_9DELT/149-316 AC G1V3L1.1
#=GS B0UHN0_METS4/139-306 AC B0UHN0.1
#=GS E4TR13_MARTH/143-310 AC E4TR13.1
#=GS C6UQV8_ECO5T/136-303 AC C6UQV8.1
#=GS F4SGR7_ECOLX/330-494 AC F4SGR7.1
#=GS G4DXR1_9GAMM/1-47 AC G4DXR1.1
#=GS C0D8A8_9CLOT/333-488 AC C0D8A8.1
#=GS H2IA48_9VIBR/194-361 AC H2IA48.1
#=GS A5GB16_GEOUR/181-348 AC A5GB16.1
#=GS E1WNM5_BACF6/154-321 AC E1WNM5.1
#=GS G5IQJ6_9ENTE/107-276 AC G5IQJ6.1
#=GS C8S0U1_9RHOB/229-396 AC C8S0U1.1
#=GS H5C518_ECOLX/206-366 AC H5C518.1
#=GS A3GS41_VIBCL/145-309 AC A3GS41.1
#=GS G1V7F0_9DELT/141-308 AC G1V7F0.1
#=GS H0N685_SALET/331-499 AC H0N685.1
#=GS Q8YR90_NOSS1/164-308 AC Q8YR90.1
#=GS H5A039_ECOLX/136-303 AC H5A039.1
#=GS A4G8Q2_HERAR/145-312 AC A4G8Q2.2
#=GS Q0AAS6_ALHEH/121-288 AC Q0AAS6.1
#=GS F3J3H9_PSEAP/127-294 AC F3J3H9.1
#=GS H3PQT9_BRUAO/144-311 AC H3PQT9.1
#=GS C9PJN0_VIBFU/142-309 AC C9PJN0.1
#=GS A5ZCL2_9BACE/157-324 AC A5ZCL2.1
#=GS G2FP41_9FIRM/267-435 AC G2FP41.1
#=GS Q8PPN1_XANAC/348-516 AC Q8PPN1.1
#=GS B4X9W0_BACTK/139-307 AC B4X9W0.1
#=GS G2ZJJ8_9RALS/147-314 AC G2ZJJ8.1
#=GS D7ZUG3_ECOLX/347-514 AC D7ZUG3.1
#=GS E1JYE9_DESFR/195-348 AC E1JYE9.1
#=GS Q986R6_RHILO/146-313 AC Q986R6.1
#=GS G0A8J9_COLFT/350-518 AC G0A8J9.1
#=GS F3J7M7_PSEAP/141-199 AC F3J7M7.1
#=GS C2YAA4_BACCE/170-336 AC C2YAA4.1
#=GS E1D5X9_VIBPA/130-296 AC E1D5X9.1
#=GS F2ZT93_9PSED/310-478 AC F2ZT93.1
#=GS D7AFS6_GEOSK/144-311 AC D7AFS6.1
#=GS B8F9P9_DESAA/195-362 AC B8F9P9.1
#=GS G5QW85_SALSE/102-278 AC G5QW85.1
#=GS H4SR56_ECOLX/8-175 AC H4SR56.1
#=GS C1A5W0_GEMAT/166-334 AC C1A5W0.1
#=GS D3SPH1_THEAH/195-362 AC D3SPH1.1
#=GS G6GLB0_9FIRM/389-556 AC G6GLB0.1
#=GS F3H2C1_PSESX/1-103 AC F3H2C1.1
#=GS G7WCE7_DESOD/140-307 AC G7WCE7.1
#=GS G6B1K7_9BACT/15-182 AC G6B1K7.1
#=GS A7ZLD1_ECO24/8-175 AC A7ZLD1.1
#=GS G9UZZ4_SALMO/13-180 AC G9UZZ4.1
#=GS E8B2F6_SALMO/111-281 AC E8B2F6.1
#=GS E7W757_SALMO/137-304 AC E7W757.1
#=GS B3QPX9_CHLP8/7-174 AC B3QPX9.1
#=GS C2UUZ8_BACCE/154-320 AC C2UUZ8.1
#=GS C3E4I9_BACTU/237-405 AC C3E4I9.1
#=GS E6T132_SHEB6/141-308 AC E6T132.1
#=GS A4Y0H3_PSEMY/28-193 AC A4Y0H3.1
#=GS Q3J1V9_RHOS4/120-287 AC Q3J1V9.1
#=GS H5E8J6_ECOLX/140-307 AC H5E8J6.1
#=GS B2JYK8_YERPB/141-308 AC B2JYK8.1
#=GS C9L145_9BACE/142-309 AC C9L145.1
#=GS E3IM83_DESVR/142-309 AC E3IM83.1
#=GS D5D6J7_ECOKI/141-308 AC D5D6J7.1
#=GS Q5LCL5_BACFN/154-321 AC Q5LCL5.1
#=GS C6BM51_RALP1/154-320 AC C6BM51.1
#=GS F2LCG2_BURGS/172-339 AC F2LCG2.1
#=GS E7JQV7_ECOLX/8-175 AC E7JQV7.1
#=GS C3F6J2_BACTU/369-537 AC C3F6J2.1
#=GS C4HJX9_YERPE/137-304 AC C4HJX9.1
#=GS A8A3K9_ECOHS/381-548 AC A8A3K9.1
#=GS H1LPD6_9PAST/15-177 AC H1LPD6.1
#=GS D0WVQ0_VIBAL/129-296 AC D0WVQ0.1
#=GS F7L2J6_9FUSO/134-301 AC F7L2J6.1
#=GS G4E576_9GAMM/143-310 AC G4E576.1
#=GS C8TMP4_ECO26/141-308 AC C8TMP4.1
#=GS F5MCY3_ECOLX/301-465 AC F5MCY3.1
#=GS F8C4Y3_THESO/142-309 AC F8C4Y3.1
#=GS H5CQF4_ECOLX/187-354 AC H5CQF4.1
#=GS C9UED0_BRUAO/142-305 AC C9UED0.1
#=GS Q0APQ1_MARMM/142-306 AC Q0APQ1.1
#=GS E4U6G2_OCEP5/164-247 AC E4U6G2.1
#=GS A5GCC3_GEOUR/577-749 AC A5GCC3.1
#=GS B7MIN8_ECO45/136-303 AC B7MIN8.1
#=GS C5BT95_TERTT/215-382 AC C5BT95.1
#=GS C3HN89_BACTU/369-537 AC C3HN89.1
#=GS E7A7B8_HAEIF/15-177 AC E7A7B8.1
#=GS C1DF92_AZOVD/349-517 AC C1DF92.1
#=GS D3P308_AZOS1/150-317 AC D3P308.1
#=GS C6YDH5_VIBCL/132-298 AC C6YDH5.1
#=GS E9ZE63_ESCFE/376-543 AC E9ZE63.1
#=GS E3FVG3_STIAD/146-313 AC E3FVG3.1
#=GS D9YEL2_9DELT/123-290 AC D9YEL2.1
#=GS Q3BZ50_XANC5/143-309 AC Q3BZ50.1
#=GS C4AXF9_BURML/144-320 AC C4AXF9.1
#=GS B4BRJ0_9BACI/142-304 AC B4BRJ0.1
#=GS H1RA30_SALMO/111-281 AC H1RA30.1
#=GS B7RSR7_9GAMM/155-319 AC B7RSR7.1
#=GS H8FQC3_RHOMO/148-315 AC H8FQC3.1
#=GS A4LNV2_BURPE/141-308 AC A4LNV2.1
#=GS E8F2Q3_SALMO/331-499 AC E8F2Q3.1
#=GS Q8KQ40_THIDE/3-170 AC Q8KQ40.1
#=GS F8ZEQ1_VIBCL/145-309 AC F8ZEQ1.1
#=GS B0UGT0_METS4/145-312 AC B0UGT0.1
#=GS NTRXL_RICTY/143-307 AC Q68WH4.1
#=GS D6Z1P1_DESAT/140-306 AC D6Z1P1.1
#=GS F3L0K7_9GAMM/246-413 AC F3L0K7.1
#=GS H6QIR1_RICMA/143-308 AC H6QIR1.1
#=GS B4X5Q8_9GAMM/136-303 AC B4X5Q8.1
#=GS G8MHE7_9BURK/125-294 AC G8MHE7.1
#=GS Q5I6M6_SYNP2/162-313 AC Q5I6M6.1
#=GS E4IV75_ENTFC/109-285 AC E4IV75.1
#=GS Q81ZE3_BACAN/148-316 AC Q81ZE3.1
#=GS A6L5X2_BACV8/145-312 AC A6L5X2.1
#=GS Q1D0K5_MYXXD/306-472 AC Q1D0K5.1
#=GS Q88CY1_PSEPK/141-308 AC Q88CY1.1
#=GS H8N0R8_CORCM/146-313 AC H8N0R8.1
#=GS A9CEZ3_AGRT5/145-313 AC A9CEZ3.1
#=GS Q2IQU1_ANADE/244-411 AC Q2IQU1.1
#=GS G2JJ58_ACIBA/122-289 AC G2JJ58.1
#=GS A3WM94_9GAMM/203-370 AC A3WM94.1
#=GS B0PHS8_9FIRM/304-472 AC B0PHS8.1
#=GS G6I1U0_9FIRM/385-553 AC G6I1U0.1
#=GS D7B6Y7_NOCDD/170-252 AC D7B6Y7.1
#=GS C7BGU1_PHOAA/143-310 AC C7BGU1.1
#=GS F3U1Q8_RHOSH/332-483 AC F3U1Q8.1
#=GS Q3J9X1_NITOC/143-310 AC Q3J9X1.1
#=GS F2NCS4_DESAR/144-311 AC F2NCS4.1
#=GS E3FZ16_STIAD/148-315 AC E3FZ16.1
#=GS Q0HNN6_SHESM/293-461 AC Q0HNN6.1
#=GS E0HZ78_9BACT/119-281 AC E0HZ78.1
#=GS C8WT15_ALIAD/138-287 AC C8WT15.1
#=GS F4V4R9_ECOLX/149-316 AC F4V4R9.1
#=GS E6HSZ4_ENTFL/75-245 AC E6HSZ4.1
#=GS A4BJ92_9GAMM/9-176 AC A4BJ92.1
#=GS B5BVQ0_SALET/141-308 AC B5BVQ0.1
#=GS Q9KE65_BACHD/153-321 AC Q9KE65.1
#=GS Q6VMS5_MYXXA/1-167 AC Q6VMS5.1
#=GS B8J2L7_DESDA/143-310 AC B8J2L7.1
#=GS I0MUX9_SALET/151-317 AC I0MUX9.1
#=GS G9WCR7_SALET/142-309 AC G9WCR7.1
#=GS Q3SKC8_THIDA/135-302 AC Q3SKC8.1
#=GS A1HNH8_9FIRM/322-490 AC A1HNH8.1
#=GS G5N9F0_SALET/331-499 AC G5N9F0.1
#=GS Q489D8_COLP3/145-312 AC Q489D8.1
#=GS E7SNK5_SHIDY/206-366 AC E7SNK5.1
#=GS C7LR24_DESBD/138-305 AC C7LR24.1
#=GS H5GFA6_ECOLX/381-548 AC H5GFA6.1
#=GS C3HJG8_BACTU/308-476 AC C3HJG8.1
#=GS B5EMU0_ACIF5/133-300 AC B5EMU0.1
#=GS B7LTF0_ESCF3/133-301 AC B7LTF0.1
#=GS C1DDK3_AZOVD/158-326 AC C1DDK3.1
#=GS F2K944_PSEBN/146-313 AC F2K944.1
#=GS B7WU78_COMTE/161-328 AC B7WU78.1
#=GS F4DMH1_PSEMN/310-477 AC F4DMH1.1
#=GS G4EP72_BACIU/143-309 AC G4EP72.1
#=GS H1EBU9_ECOLX/327-491 AC H1EBU9.1
#=GS H5E6S0_ECOLX/16-186 AC H5E6S0.1
#=GS D2ELN8_PEDAC/103-278 AC D2ELN8.1
#=GS G4Q105_ECOLX/272-440 AC G4Q105.1
#=GS D2AHC5_SHIF2/136-303 AC D2AHC5.1
#=GS E3FTF6_STIAD/302-468 AC E3FTF6.1
#=GS C0VHF4_9GAMM/140-307 AC C0VHF4.1
#=GS B5EP07_ACIF5/165-332 AC B5EP07.1
#=GS A7HV61_PARL1/120-287 AC A7HV61.1
#=GS F9B4Q2_VIBCL/280-448 AC F9B4Q2.1
#=GS G1Z8N1_ECOLX/381-548 AC G1Z8N1.1
#=GS G5SMZ8_9BACT/132-299 AC G5SMZ8.1
#=GS B3ZA27_BACCE/152-318 AC B3ZA27.1
#=GS I0VTH0_ECOLX/304-471 AC I0VTH0.1
#=GS I0AIL0_9BACT/269-436 AC I0AIL0.1
#=GS F9ZB38_ODOSD/13-180 AC F9ZB38.1
#=GS G0DQT7_9GAMM/10-177 AC G0DQT7.1
#=GS B1LQ51_ECOSM/381-548 AC B1LQ51.1
#=GS E8EEF8_SALMO/187-354 AC E8EEF8.1
#=GS F4NLY1_9ENTR/15-184 AC F4NLY1.1
#=GS F2HWQ1_BRUMM/144-308 AC F2HWQ1.1
#=GS A8FXE6_SHESH/150-317 AC A8FXE6.1
#=GS C3K8C1_PSEFS/31-197 AC C3K8C1.1
#=GS C4HSQ2_YERPE/143-310 AC C4HSQ2.1
#=GS D5EQM8_CORAD/218-385 AC D5EQM8.1
#=GS E8DGT5_SALMO/141-308 AC E8DGT5.1
#=GS B7I9V6_ACIB5/128-295 AC B7I9V6.1
#=GS B5FD84_VIBFM/203-370 AC B5FD84.1
#=GS B9MFM3_ACIET/155-322 AC B9MFM3.1
#=GS C9YQ89_CLODR/332-500 AC C9YQ89.1
#=GS Q2RKJ6_MOOTA/320-488 AC Q2RKJ6.1
#=GS H5HAA3_ECOLX/347-514 AC H5HAA3.1
#=GS F8ZNZ8_VIBCL/145-309 AC F8ZNZ8.1
#=GS G9TJB3_SALMO/137-304 AC G9TJB3.1
#=GS B7MUG3_ECO81/206-366 AC B7MUG3.1
#=GS C4XQZ8_DESMR/191-339 AC C4XQZ8.1
#=GS Q06573_PSEUF/235-402 AC Q06573.2
#=GS G6ZIG5_VIBCL/141-308 AC G6ZIG5.1
#=GS Q0B928_BURCM/38-205 AC Q0B928.1
#=GS A4MY41_HAEIF/1-55 AC A4MY41.1
#=GS D0YWX9_LISDA/7-174 AC D0YWX9.1
#=GS F3I6Z6_PSESF/131-297 AC F3I6Z6.1
#=GS C4I3U7_BURPE/141-308 AC C4I3U7.1
#=GS F5YM41_TREPZ/87-262 AC F5YM41.1
#=GS A9FLX9_SORC5/138-305 AC A9FLX9.1
#=GS E0GFJ2_ENTFL/75-245 AC E0GFJ2.1
#=GS G7LWB6_9ENTR/205-372 AC G7LWB6.1
#=GS F4VZ88_ECOLX/272-440 AC F4VZ88.1
#=GS F3K4K5_PSESZ/1-133 AC F3K4K5.1
#=GS F2IFT9_FLUTR/161-328 AC F2IFT9.1
#=GS B5EJI5_ACIF5/138-305 AC B5EJI5.1
#=GS F1ZYX1_THEET/347-514 AC F1ZYX1.1
#=GS B4UFM6_ANASK/23-215 AC B4UFM6.1
#=GS F9ARC6_VIBCL/130-296 AC F9ARC6.1
#=GS Q1IUS1_KORVE/170-337 AC Q1IUS1.1
#=GS C3ICC4_BACTU/373-540 AC C3ICC4.1
#=GS D4HYF1_ERWAC/136-303 AC D4HYF1.1
#=GS B5Q0I7_SALHA/331-499 AC B5Q0I7.1
#=GS F5M480_RHOSH/179-345 AC F5M480.1
#=GS PRPR_SALTY/221-397 AC P74839.1
#=GS H4LX49_ECOLX/187-354 AC H4LX49.1
#=GS Q3Y2J4_ENTFC/83-253 AC Q3Y2J4.1
#=GS G0BNP6_9ENTR/337-501 AC G0BNP6.1
#=GS D1JU82_9BACE/133-300 AC D1JU82.1
#=GS H1D3R4_9FUSO/134-301 AC H1D3R4.1
#=GS C3RJL5_9FIRM/88-247 AC C3RJL5.1
#=GS H4I484_ECOLX/141-308 AC H4I484.1
#=GS G9VST2_SALMO/151-317 AC G9VST2.1
#=GS H0L701_SALMO/331-499 AC H0L701.1
#=GS H5VRC1_SALSE/90-266 AC H5VRC1.1
#=GS F8GRL7_CUPNN/326-494 AC F8GRL7.1
#=GS B3IJ25_ECOLX/218-394 AC B3IJ25.1
#=GS Q314Z8_DESDG/465-632 AC Q314Z8.1
#=GS G9WC29_SALET/111-168 AC G9WC29.1
#=GS E5AU32_BURRH/344-512 AC E5AU32.1
#=GS G9XU38_DESHA/266-434 AC G9XU38.1
#=GS G7W5T0_DESOD/283-451 AC G7W5T0.1
#=GS C0Q2T6_SALPC/141-308 AC C0Q2T6.1
#=GS D6Z3F2_DESAT/144-311 AC D6Z3F2.1
#=GS F2NGT4_DESAR/137-304 AC F2NGT4.1
#=GS H5JGJ0_ECOLX/327-491 AC H5JGJ0.1
#=GS B2IE22_BEII9/221-388 AC B2IE22.1
#=GS A1SZE8_PSYIN/317-485 AC A1SZE8.1
#=GS G4DMD3_9GAMM/9-176 AC G4DMD3.1
#=GS G5N829_SALET/141-221 AC G5N829.1
#=GS A9GA77_SORC5/1407-1574 AC A9GA77.1
#=GS F2K921_PSEBN/207-375 AC F2K921.1
#=GS Q57KR4_SALCH/418-585 AC Q57KR4.1
#=GS F1ZUS1_THEET/90-263 AC F1ZUS1.1
#=GS Q1PYM7_9BACT/147-316 AC Q1PYM7.1
#=GS G2AYS7_ECOLX/262-430 AC G2AYS7.1
#=GS C3K167_PSEFS/144-311 AC C3K167.1
#=GS A8GSR8_RICRS/143-306 AC A8GSR8.1
#=GS B6ZWR3_ECO57/136-303 AC B6ZWR3.1
#=GS F3ET44_9PSED/144-311 AC F3ET44.1
#=GS E2YT46_ENTFL/106-280 AC E2YT46.1
#=GS G0GS52_KLEPN/102-278 AC G0GS52.1
#=GS A4G4U8_HERAR/184-351 AC A4G4U8.2
#=GS Q1VC81_VIBAL/282-450 AC Q1VC81.1
#=GS A3L5W4_PSEAI/146-312 AC A3L5W4.1
#=GS B3XBS7_ECOLX/327-491 AC B3XBS7.1
#=GS A1TYE9_MARAV/142-309 AC A1TYE9.1
#=GS Q3B5Z9_PELLD/143-310 AC Q3B5Z9.1
#=GS G9YXK7_9FIRM/192-357 AC G9YXK7.1
#=GS G7AYN5_VIBCL/280-448 AC G7AYN5.1
#=GS B1Q9M1_CLOBO/82-256 AC B1Q9M1.1
#=GS F2LMJ5_BURGS/11-178 AC F2LMJ5.1
#=GS Q53E02_MYXXA/207-374 AC Q53E02.1
#=GS Q9K8Q5_BACHD/141-308 AC Q9K8Q5.1
#=GS B8KA97_VIBPA/147-314 AC B8KA97.1
#=GS D5DZX9_BACMQ/143-309 AC D5DZX9.1
#=GS C9PDC6_VIBFU/129-295 AC C9PDC6.1
#=GS A3XS06_9VIBR/265-433 AC A3XS06.1
#=GS D4VKA9_9BACE/157-324 AC D4VKA9.1
#=GS E3GQE4_EUBLK/360-527 AC E3GQE4.1
#=GS H8MGI6_CORCM/203-370 AC H8MGI6.1
#=GS B3CGW7_9BACE/141-308 AC B3CGW7.1
#=GS Q9KBP6_BACHD/244-412 AC Q9KBP6.1
#=GS F4C7Q5_SPHS2/554-721 AC F4C7Q5.1
#=GS D1RKZ8_LEGLO/129-295 AC D1RKZ8.1
#=GS E8G8M7_SALMO/206-366 AC E8G8M7.1
#=GS A8U6I0_9LACT/115-287 AC A8U6I0.1
#=GS C6E6L8_GEOSM/170-338 AC C6E6L8.1
#=GS Q7UT14_RHOBA/433-600 AC Q7UT14.1
#=GS H0LP98_SALMO/331-499 AC H0LP98.1
#=GS G6XLW1_9PROT/142-306 AC G6XLW1.1
#=GS O31393_BACME/78-246 AC O31393.1
#=GS G8AF95_AZOBR/145-312 AC G8AF95.1
#=GS G8U4R2_BACCE/80-250 AC G8U4R2.1
#=GS G4RCQ4_PELHB/145-312 AC G4RCQ4.1
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