#=GF ID   IBV_3A
#=GF AC   PF03617.8
#=GF DE   IBV 3A protein 
#=GF AU   Finn RD
#=GF SE   Pfam-B_3183 (release 7.0)
#=GF GA   25.00 25.00;
#=GF TC   89.10 89.00;
#=GF NC   18.60 17.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR005214;
#=GF CC   The gene product of gene 3 from Avian infectious bronchitis
#=GF CC   virus. Currently, the function of this protein remains unknown.
#=GF SQ   81
#=GS G3C795_9GAMC/1-57  AC G3C795.1
#=GS F4MIR7_9GAMC/1-57  AC F4MIR7.1
#=GS Q9J3R1_9GAMC/1-57  AC Q9J3R1.1
#=GS Q998S4_CVTKE/1-57  AC Q998S4.1
#=GS B3TD62_CVTKE/1-57  AC B3TD62.1
#=GS Q9J3Q2_9GAMC/1-57  AC Q9J3Q2.1
#=GS B2MWM0_9GAMC/1-52  AC B2MWM0.1
#=GS D0R6R4_9GAMC/1-57  AC D0R6R4.1
#=GS A4ZCJ7_9GAMC/1-57  AC A4ZCJ7.1
#=GS Q9J3Q5_9GAMC/1-57  AC Q9J3Q5.1
#=GS G3C7C0_9GAMC/1-57  AC G3C7C0.1
#=GS B7SXR5_9GAMC/1-57  AC B7SXR5.1
#=GS Q9J4A9_9GAMC/1-57  AC Q9J4A9.1
#=GS Q0ZB53_9GAMC/1-57  AC Q0ZB53.1
#=GS C7S7Z1_9GAMC/1-57  AC C7S7Z1.1
#=GS B7SXN3_9GAMC/1-57  AC B7SXN3.1
#=GS C7DZG6_9GAMC/1-57  AC C7DZG6.1
#=GS O12389_9GAMC/1-57  AC O12389.1
#=GS B2LRZ8_CVTKE/1-57  AC B2LRZ8.1
#=GS B3FHU6_CVTKE/1-57  AC B3FHU6.1
#=GS C7S860_9GAMC/1-57  AC C7S860.1
#=GS A4ZCQ5_9GAMC/1-57  AC A4ZCQ5.1
#=GS F4MIQ7_9GAMC/1-57  AC F4MIQ7.1
#=GS NS3A_IBVU4/1-57    AC P30239.1
#=GS E5RCX3_9GAMC/1-57  AC E5RCX3.1
#=GS C9DSU9_CVTKE/1-57  AC C9DSU9.1
#=GS A5Z154_9GAMC/1-57  AC A5Z154.1
#=GS A4ZCL0_9GAMC/1-57  AC A4ZCL0.1
#=GS A5Z139_9GAMC/1-57  AC A5Z139.1
#=GS Q6DTV1_9GAMC/1-57  AC Q6DTV1.1
#=GS G3C7D3_9GAMC/1-57  AC G3C7D3.1
#=GS NS3A_IBVB/1-57     AC P30237.2
#=GS G3C769_9GAMC/1-57  AC G3C769.1
#=GS D7SC98_9GAMC/1-57  AC D7SC98.1
#=GS NS3A_IBVM/1-57     AC P05137.2
#=GS F5BDC1_9GAMC/1-57  AC F5BDC1.1
#=GS Q0ZB45_9GAMC/1-57  AC Q0ZB45.1
#=GS A5Z162_9GAMC/1-57  AC A5Z162.1
#=GS A5Z115_9GAMC/1-57  AC A5Z115.1
#=GS Q66VA6_9GAMC/1-57  AC Q66VA6.1
#=GS Q5XLA3_9GAMC/1-57  AC Q5XLA3.1
#=GS Q9J4B6_9GAMC/1-57  AC Q9J4B6.1
#=GS Q6DV54_9GAMC/1-57  AC Q6DV54.1
#=GS G0ZGK2_9GAMC/1-56  AC G0ZGK2.1
#=GS A5Z0Z9_9GAMC/1-57  AC A5Z0Z9.1
#=GS A4ZCL8_9GAMC/1-57  AC A4ZCL8.1
#=GS Q778S5_IBVBC/1-57  AC Q778S5.1
#=GS A5Z1A2_9GAMC/1-57  AC A5Z1A2.1
#=GS NS3A_IBVP3/1-57    AC P30238.1
#=GS Q9J3P9_9GAMC/1-57  AC Q9J3P9.1
#=GS E5D079_9GAMC/1-57  AC E5D079.1
#=GS F6M7B6_9GAMC/1-57  AC F6M7B6.1
#=GS A5Z170_9GAMC/1-57  AC A5Z170.1
#=GS A4ZCM6_9GAMC/1-57  AC A4ZCM6.1
#=GS D0R6Q7_9GAMC/1-57  AC D0R6Q7.1
#=GS B7SXR3_9GAMC/1-57  AC B7SXR3.1
#=GS A4ZCI9_9GAMC/1-57  AC A4ZCI9.1
#=GS A4ZCS1_9GAMC/1-57  AC A4ZCS1.1
#=GS Q706C4_9GAMC/1-57  AC Q706C4.1
#=GS G3C7E5_9GAMC/1-57  AC G3C7E5.1
#=GS Q6VMD3_9GAMC/1-57  AC Q6VMD3.1
#=GS C1IXZ6_9GAMC/1-57  AC C1IXZ6.1
#=GS NS3A_IBVU5/1-57    AC P30240.1
#=GS A5Z194_9GAMC/1-46  AC A5Z194.1
#=GS Q9J3P6_9GAMC/1-57  AC Q9J3P6.1
#=GS E5D068_9GAMC/1-57  AC E5D068.1
#=GS F4MIY7_9GAMC/1-57  AC F4MIY7.1
#=GS C9DST8_CVTKE/1-57  AC C9DST8.1
#=GS Q7T832_9GAMC/1-57  AC Q7T832.1
#=GS Q778S0_IBVBU/1-57  AC Q778S0.1
#=GS Q0ZB61_9GAMC/1-57  AC Q0ZB61.1
#=GS C1KEX1_9GAMC/1-56  AC C1KEX1.1
#=GS A5Z123_9GAMC/1-57  AC A5Z123.1
#=GS A5Z0Z1_9GAMC/1-57  AC A5Z0Z1.1
#=GS Q9J3Q8_9GAMC/1-57  AC Q9J3Q8.1
#=GS B3TD49_CVTKE/1-57  AC B3TD49.1
#=GS Q6R4P4_9GAMC/1-57  AC Q6R4P4.1
#=GS B7SXP9_9GAMC/1-57  AC B7SXP9.1
#=GS Q64FZ3_9GAMC/1-57  AC Q64FZ3.1
#=GS Q5I7K1_9GAMC/1-57  AC Q5I7K1.1
#=GS Q5MAP3_9GAMC/1-57  AC Q5MAP3.1
G3C795_9GAMC/1-57             MIQTPTSFLIVLTLLWCKLVLSCFKECVLALLQLIQVLLQIINSNLQSRLLLWHILD....
F4MIR7_9GAMC/1-57             MIQSPTSFLIVLILLWCKLALSCFKECVVALQQLIQVLLQIINSNLQSRLLLWHSLD....
Q9J3R1_9GAMC/1-57             MIQTPTSFLVVLTLLWCKLVLSCFKECVLALLQLIQVLLQIINSNLQSRLLHWHSLD....
Q998S4_CVTKE/1-57             MIQSPTSFLIVLILLWCKLALSCFKECVIALQQLIQVLLQIINSNLQSRLLLWHSLD....
B3TD62_CVTKE/1-57             MIQSPTSFLIVLTLLWCKLVLSCFKECVLALLQLIQFLLQIINSDLQSRLLLWHRLD....
Q9J3Q2_9GAMC/1-57             MIQSPTSFLIVLTLLWCKLALSCFKECVIALQQLIQVLLQIINSNLQSRLLLWHRLD....
B2MWM0_9GAMC/1-52             MIQNPTSFLVVLILLWCKLLLSC-----IALHQLIQVLLQIINNNLQSRLILWYSLD....
D0R6R4_9GAMC/1-57             MVLNPTSFIIVLILLWCKLVLSCFKECIIALQQLIHVLLQIINSTLQSRLSLWHSLD....
A4ZCJ7_9GAMC/1-57             MLQTPTSFLIVLILLWCKLVLSCIRECVIALHQLTQVLLQIINNNLQSRLILWHSLD....
Q9J3Q5_9GAMC/1-57             MIQSPTSFLIVLILLWCKLVLGCSKECVLALQQLIQILLQIINSNLQSRLLLWHSLD....
G3C7C0_9GAMC/1-57             MIQSPTSFLIVLILLWCKLVLSCFREFIIALQQLTQVLLQIIDSNLQSKLTLWHSLD....
B7SXR5_9GAMC/1-57             MIQNPTSFLVVLILLWCKLALSCFKECVIALQQLIQVLLQIINSSLQSRLTLLHSLD....
Q9J4A9_9GAMC/1-57             MIQSPTSFLIVLILLWCKLVLSCFREFIIALQQLTQVLLQIIDSNLQSRLTLWHSLD....
Q0ZB53_9GAMC/1-57             MIQSPTSFLIVLILLWCKLALSCFKECIIALQQLIQVLLQIINSSLQSRLTLLHSLD....
C7S7Z1_9GAMC/1-57             MVQTPASFVIVLILLWFKLVLSCFRECVVTLQQLIQVLLQIINNNLRSRLLLLHSLD....
B7SXN3_9GAMC/1-57             MIQAPTSFVILLILLWFKLVLSCFRECVIALQLLIQVLLQIINNNLHSRLLLQHSLD....
C7DZG6_9GAMC/1-57             MIQSPTSFLIVLILLWCKLALSCFKECVIALQQLIQVLLQIINSSLQSRLTLLHSLD....
O12389_9GAMC/1-57             MIHTPISFLIVLTLLWCKLVLSCFKECVLALLQVIQVLLQIISNNLQSRLLLWHSLD....
B2LRZ8_CVTKE/1-57             MSQSPTSFVIVLILLWFKLVLSCFRECVLTLQQLVQVLLQIINSNLQSRLTLLHSLD....
B3FHU6_CVTKE/1-57             MIQTPTSFLIVLILLWFKLVLSCFKECVLALLQLIQVLLQIINSNLQARLLLWHSLD....
C7S860_9GAMC/1-57             MIQSPTSFLIVLILLWCKLVLSCFREFIIALQQLTQVLLQIIDSNLQSRLTLCHSLD....
A4ZCQ5_9GAMC/1-57             MIQNPTSFLVVLILLWCKLALSCIKECVIALHQLIQVLLQIINNNLQSRLILWHSLD....
F4MIQ7_9GAMC/1-57             MIQNPTSFLIVLTLLWCKLVLSCFKECVLALLQLIQVLLQIINSNLQSRLLLWHSLD....
NS3A_IBVU4/1-57               MIQSPTSFLIVLVLLWCKLVISCFRECFVALHQLVQVLLQIINSNLQSRLLLWHSLD....
E5RCX3_9GAMC/1-57             MVQTPASFVILLILLWFKLALSCFRECVVALQQLIQVLLQIINNNLRSRMLLWHSLD....
C9DSU9_CVTKE/1-57             MIQTPTSFLIVLILLWCKLVLSCFKECVLALLQLIQVLLQIINSNLQARLLLWHSLD....
A5Z154_9GAMC/1-57             MIQNPTSFLIVLILLWFKLVLSCFRECVLALLQLIQVLHQIINSNLQSRLLLWHSLD....
A4ZCL0_9GAMC/1-57             MIQNPTSFLVVLTLLWCKLVLSCIRECVIALHQLIQVVLQIVNNNLQSRLILWHSLD....
A5Z139_9GAMC/1-57             MIQTPTSFVIVLILLWFKLALSCFRECVVTLQQLIQVLLQIINNNLRSRLLLWHSLD....
Q6DTV1_9GAMC/1-57             MIQNPTSFLIVLILLWFKLVLSCFRECVLALLQLIQVLLQIINSNLQSRLLLWHSLD....
G3C7D3_9GAMC/1-57             MIQSPTSFLIVLTLLWCKLALSCLRECLVALQQLIHVLLQIINSTLQSRLLLLHSLD....
NS3A_IBVB/1-57                MIQSPTSFLIVLILLWCKLVLSCFREFIIALQQLIQVLLQIINSNLQSRLTLWHSLD....
G3C769_9GAMC/1-57             MIQNPKSFLIVLVLLWCKLALSCFKECVVALQQLIQVLLQIINSNLQSRLLLWHSLD....
D7SC98_9GAMC/1-57             MVQTPASFVILLIFLWFKLALSCFSECIVALQHLIQVLLQIINNNLQSRLLLWHSLD....
NS3A_IBVM/1-57                MIQSPTSFLIVLILLWCKLVLSCFREFIIALQQLIQVLLQIINSNLQPRLTLCHSLD....
F5BDC1_9GAMC/1-57             MIQNPTSFLVVLILLWLKLVLSCFKECVLALLQLIQVLLQIITNNLRFRLLLWHSLD....
Q0ZB45_9GAMC/1-57             MIQAPTSFVILLILLWFKLVLSCFRECVIALQQLIQVLLQIINNNLHSRLLLQHSLD....
A5Z162_9GAMC/1-57             MVQNPTSFLIVLVLLWFKLVLSCCRECVLALLQLIQVLLQIINNNLQSRLLLWHSLD....
A5Z115_9GAMC/1-57             MIQTPTSFVIVLILLWFKLALSCFRECVVALQQLIQVLLQIINNNLQSRLILWHSLD....
Q66VA6_9GAMC/1-57             MIQSPTSFLIVLILLWCKLVLSCFREFIIALQQLIQVLLQIINSNLQPRLTLCHSLD....
Q5XLA3_9GAMC/1-57             MIQSPTSFLIVLIFLWCKLALSCFKECVIALQQLIQVLFQIINSNLQSRLLLWHSLD....
Q9J4B6_9GAMC/1-57             MIQRPTSFLIVLIFLGCKLVLSCFKECVIALQQLIQVLLQIISNNLQSRLLLLHSLD....
Q6DV54_9GAMC/1-57             MIQSPTSFLIVLIFLWCKLVLSCFREFIIALQQLIQVLLQIINSNLQPRLTLCHSLD....
G0ZGK2_9GAMC/1-56             MIQSPTSFLIVLIFLWCKLVLSGFREFIIALSQLTQVLLQIIDSNLQPRLT-CHSLD....
A5Z0Z9_9GAMC/1-57             MIQSPTSFLIVLILLWCKLALSCFKECVIALQQLIQVLLQIINSILQSRLTLLHSLD....
A4ZCL8_9GAMC/1-57             MIQNPTSFLVVLILLWCKLLLSCIKECVIALHQLIQVLLQIINNNLQSRLILWYGLD....
Q778S5_IBVBC/1-57             MIQSPTSFLIVLILLWCKLVLSCFREFIIALQQLIQVLLQIINSNLQSRLTLWHSLD....
A5Z1A2_9GAMC/1-57             MIQNPTSFLIVLILLWFKLVLSCFRECVLALLQLIQVLLQIINSNLQSRLLFWDSLD....
NS3A_IBVP3/1-57               MIQSPTSFLIVLILLWCKLVLSCFIECLVALQQLIHVLLQIINSNLQSRLLLWHSLD....
Q9J3P9_9GAMC/1-57             MIQSPTSFLIVLILLWCKLVLGCSKECVLALLQLIQILLQIINSNLQSRLLLWHSLD....
E5D079_9GAMC/1-57             MIQSPTSFLIVLIFLWCKLALSCFKECVXALXQLIQVLLQIINSNLQSRLLLWHSLD....
F6M7B6_9GAMC/1-57             MLQTPTSFLIVLILLWYKLVLSCIRECVITLHQLIQVLLQIISTNLQSRLILWHSLD....
A5Z170_9GAMC/1-57             MVQTPASFVILLIFLWFKLALSCCSECIVALQQLIQVLLQIVNNNLQSRLLLWHSLD....
A4ZCM6_9GAMC/1-57             MIQNPTSFLVVLILLWCKLLLSCIKECVIALHQLIQVLLQIINNNLQSRLILWYSLD....
D0R6Q7_9GAMC/1-57             MIQKPTSFLIVLILLWFKLVLSCFRECVLALLQLIRVLLQIINSNLQSRMLLWHSLD....
B7SXR3_9GAMC/1-57             MIQAPTSFVILLILLWFKLVLSCLRECVIALQQLIQVLLQIINSNLHSRLLLQHSLD....
A4ZCI9_9GAMC/1-57             MLQTPTSFLIVLILLWCKLVLSCIRECVIALHQLIQVLLQIINNNLQSRLILWHSLD....
A4ZCS1_9GAMC/1-57             MIQNPTSFLIVLILLWCKLALSCIKECVIALHQLIQVLLQIINSNLQSRLLLWHSLD....
Q706C4_9GAMC/1-57             MIQSPTSFLILLTLLWCKLVIICFSEYLVALQQLIQVLLQIVNSNLQSRLLLWHSP-a...
G3C7E5_9GAMC/1-57             MIQSPTSFLIVLTLLWCKLALSCLRECLVALQQLIHVLLQIINSNLQSRLLLLHSLD....
Q6VMD3_9GAMC/1-57             MVQTPASFVILSIFLWFKLALSCFSECIVALQQLIQVLLQIINNNLQSRLLLWHSLD....
C1IXZ6_9GAMC/1-57             MIQSPTSFLIVLTLLWCKLVLSCFKECVLALLQLIQVLLKVISSNLQSRLLLWHSLD....
NS3A_IBVU5/1-57               MIQSPTSFLIVLILLWCKLVISCFRECIVALQQLIQVLLQIINSNLQSRLLLWHSLD....
A5Z194_9GAMC/1-46             MIQKPTSFLIVLILLWFKLVLSCFRECVLALLQLIRVLLQIINN-------------vr..
Q9J3P6_9GAMC/1-57             MIQTPTSFLIGLTLLWCKIVLSCFKECVLALLQLIQVLLQIINSNLQSRLLLWHSLD....
E5D068_9GAMC/1-57             MIQTPTSFLIVLIFLWCKLALSCFKECVIALQQLIQVLLQIINSNLQSRLLLWHSLD....
F4MIY7_9GAMC/1-57             MIQSPTSFLIVLILLWCKLVLSCFREFIIALQQLIQVLLQIINSNLQSRLTLWHSLD....
C9DST8_CVTKE/1-57             MIQTPTSFLIVLTLLWCKLVLSCFSECVVALQQLIQVLLQIINSNLQPRLTLCHSLD....
Q7T832_9GAMC/1-57             MIQNPTSFLIVLILLWFKLVLSCFRDCVLALLQLIQVLLQIINSNLQSRLLLWHSLD....
Q778S0_IBVBU/1-57             MIQSPTSFLIVLILLWCKLVLSCFREFIIALQQLIQVLLQIINSNLQSRLTLWHSLD....
Q0ZB61_9GAMC/1-57             MIQTPTSFVILLILLWFKLVLSCFRECVITLQQLIQVLLQIINNNLQTRLFLQHSLD....
C1KEX1_9GAMC/1-56             MIQNPTSFLIVLILLWFKLVLSCFRECVLALLQLIQVLLQIINSNLQSRLLF-----gtar
A5Z123_9GAMC/1-57             MIQSPTSFLIVLIFLWCKLVLSCFREFIIALQQLIQVLLQIINSNLQTRLTLCHSLD....
A5Z0Z1_9GAMC/1-57             MVQTPASFVILLILLWFKLALSCFRECVVALQQLIQVLLQIINNNLRSRLLLWHSLD....
Q9J3Q8_9GAMC/1-57             MIQSPTSFLIVLTLLWCKLALSCFKECVIALQQLIQVLLQIINSNLQSRLLLWHSLD....
B3TD49_CVTKE/1-57             MIQTPTSFLIVLILLWCKLVLSCFKECVLTLQQLIQVLLQIINSNLQSRLLLWHSLD....
Q6R4P4_9GAMC/1-57             MIQTPTSFLIVLTLLWCKLVLSCFKECVLALLQLIQVLLQIINSNLQSRLLLWHSLD....
B7SXP9_9GAMC/1-57             MIQTPTSFVILLILLWFKLVLSCFRECVIALQQLIQVLLQIINNNLHSRLLLQHSLD....
Q64FZ3_9GAMC/1-57             MIQNPTSFLIVLILLWFKLVLSCFRECVLALLQLIQVLLQIINSNLQSRLLLWHSLD....
Q5I7K1_9GAMC/1-57             MIQSPTSFLIVLIFLWCKLALSCFKECVIALQQLIQVLLQIINSNLQSRLLLWHSLD....
Q5MAP3_9GAMC/1-57             MIQNPTSFLVVLILLWLKLVLSCFKECVLALLQLIQVLLQIINSNLQSRLLLWHSLD....
#=GC seq_cons                 MIQoPTSFLIVLILLWCKLVLSCF+ECVlALpQLIQVLLQIINSNLQSRLLLWHSLD....
//