#=GF ID   PPR
#=GF AC   PF01535.15
#=GF DE   PPR repeat
#=GF PI   DUF17; 
#=GF AU   Bateman A, Birney E
#=GF SE   Pfam-B_874 (release 4.0)
#=GF GA   25.00 9.30;
#=GF TC   25.00 9.30;
#=GF NC   24.90 9.20;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Pentatricopeptide_repeat
#=GF RN   [1]
#=GF RM   7664742
#=GF RT   The product of the nuclear gene PET309 is required for
#=GF RT   translation of mature mRNA and stability or production of
#=GF RT   intron-containing RNAs derived from the mitochondrial COX1 locus
#=GF RT   of Saccharomyces cerevisiae. 
#=GF RA   Manthey GM, McEwen JE; 
#=GF RL   EMBO J 1995;14:4031-4043.
#=GF RN   [2]
#=GF RM   8039510
#=GF RT   A nuclear mutation in maize blocks the processing and
#=GF RT   translation of several chloroplast mRNAs and provides evidence
#=GF RT   for the differential translation of alternative mRNA forms. 
#=GF RA   Barkan A, Walker M, Nolasco M, Johnson D; 
#=GF RL   EMBO J 1994;13:3170-3181.
#=GF RN   [3]
#=GF RM   10664580
#=GF RT   The PPR motif - a TPR-related motif prevalent in plant
#=GF RT   organellar proteins. 
#=GF RA   Small ID, Peeters I; 
#=GF RL   Trends Biochem Sci 2000;25:45-47.
#=GF DR   INTERPRO; IPR002885;
#=GF CC   This repeat has no known function. It is about 35 amino acids
#=GF CC   long and found in up to 18 copies in some proteins.  This family
#=GF CC   appears to be greatly expanded in plants. This repeat occurs in
#=GF CC   PET309 Swiss:P32522 that may be involved in RNA stabilisation
#=GF CC   [1]. This domain occurs in crp1 that is involved in RNA
#=GF CC   processing [2].  This repeat is associated with a predicted
#=GF CC   plant protein Swiss:O49549 that has a domain organisation
#=GF CC   similar to the human BRCA1 protein. The repeat has been called
#=GF CC   PPR [3].
#=GF SQ   31410
#=GS I1NGQ4_SOYBN/94-122     AC I1NGQ4.1
#=GS D7G0M4_ECTSI/218-247    AC D7G0M4.1
#=GS D7SJ90_VITVI/451-479    AC D7SJ90.1
#=GS PP303_ARATH/312-342     AC Q9XE98.1
#=GS Q9SA46_ARATH/418-447    AC Q9SA46.1
#=GS F6HLP2_VITVI/353-380    AC F6HLP2.1
#=GS G4YIC1_PHYSP/562-586    AC G4YIC1.1
#=GS D7LS93_ARALL/182-210    AC D7LS93.1
#=GS D8T9V4_SELML/235-265    AC D8T9V4.1
#=GS I1KT87_SOYBN/282-312    AC I1KT87.1
#=GS C5WWS7_SORBI/393-419    AC C5WWS7.1
#=GS D2DHU1_9LAMI/81-111     AC D2DHU1.1
#=GS B4FDX7_MAIZE/25-55      AC B4FDX7.1
#=GS B9IJY6_POPTR/158-185    AC B9IJY6.1
#=GS I1LIX0_SOYBN/191-221    AC I1LIX0.1
#=GS A2YHI6_ORYSI/166-195    AC A2YHI6.1
#=GS D8S3F3_SELML/98-128     AC D8S3F3.1
#=GS I1JZD0_SOYBN/348-376    AC I1JZD0.1
#=GS I1NXB1_ORYGL/324-350    AC I1NXB1.1
#=GS I1JDZ4_SOYBN/533-561    AC I1JDZ4.1
#=GS A3ANL0_ORYSJ/408-437    AC A3ANL0.1
#=GS B9T1C7_RICCO/348-377    AC B9T1C7.1
#=GS C5YJ88_SORBI/172-198    AC C5YJ88.1
#=GS D8QY09_SELML/228-254    AC D8QY09.1
#=GS B9RWF2_RICCO/266-296    AC B9RWF2.1
#=GS G7ZY78_MEDTR/690-720    AC G7ZY78.1
#=GS D2DHX7_9LAMI/439-469    AC D2DHX7.1
#=GS F6GT82_VITVI/235-265    AC F6GT82.1
#=GS A5C139_VITVI/212-238    AC A5C139.1
#=GS D8SYN8_SELML/340-366    AC D8SYN8.1
#=GS Q5W965_9BRYO/403-430    AC Q5W965.1
#=GS D7MME9_ARALL/178-207    AC D7MME9.1
#=GS D8T6V4_SELML/1-26       AC D8T6V4.1
#=GS PP234_ARATH/417-443     AC Q9LRP6.1
#=GS PP355_ARATH/173-201     AC Q9SZK1.1
#=GS I1P252_ORYGL/486-516    AC I1P252.1
#=GS D8SVQ9_SELML/219-245    AC D8SVQ9.1
#=GS I1HEF5_BRADI/386-413    AC I1HEF5.1
#=GS D8QNI2_SELML/328-358    AC D8QNI2.1
#=GS F6GX26_VITVI/302-331    AC F6GX26.1
#=GS B9RDB0_RICCO/392-417    AC B9RDB0.1
#=GS B8C6M5_THAPS/283-312    AC B8C6M5.1
#=GS G4XE07_LEPVR/346-374    AC G4XE07.1
#=GS D7SHW7_VITVI/224-254    AC D7SHW7.1
#=GS D7MDF3_ARALL/463-493    AC D7MDF3.1
#=GS E9CV78_COCPS/633-661    AC E9CV78.1
#=GS Q8LQG2_ORYSJ/245-275    AC Q8LQG2.1
#=GS PPR86_ARATH/335-365     AC O22714.1
#=GS D8R2Y3_SELML/417-444    AC D8R2Y3.1
#=GS I1MAB4_SOYBN/205-235    AC I1MAB4.1
#=GS D7SXI6_VITVI/289-319    AC D7SXI6.1
#=GS D7M8N4_ARALL/314-344    AC D7M8N4.1
#=GS C5Y600_SORBI/182-212    AC C5Y600.1
#=GS D7KP29_ARALL/239-267    AC D7KP29.1
#=GS A2YND1_ORYSI/46-75      AC A2YND1.1
#=GS D8RKG8_SELML/91-121     AC D8RKG8.1
#=GS I1M1F9_SOYBN/62-88      AC I1M1F9.1
#=GS D8R6R9_SELML/267-296    AC D8R6R9.1
#=GS F6HVR4_VITVI/334-363    AC F6HVR4.1
#=GS Q8LPZ1_ORYSJ/562-588    AC Q8LPZ1.1
#=GS PP197_ARATH/308-338     AC Q7XJN6.1
#=GS D6PQB1_9BRAS/83-108     AC D6PQB1.1
#=GS D8R362_SELML/205-232    AC D8R362.1
#=GS G7IWK2_MEDTR/286-314    AC G7IWK2.1
#=GS B9HVL0_POPTR/400-430    AC B9HVL0.1
#=GS B8BNU9_ORYSI/138-159    AC B8BNU9.1
#=GS B9HPB6_POPTR/144-174    AC B9HPB6.1
#=GS C0JCR3_9BRAS/52-80      AC C0JCR3.1
#=GS D8RDT9_SELML/7-36       AC D8RDT9.1
#=GS I1L4S9_SOYBN/2-28       AC I1L4S9.1
#=GS I1NJG3_ORYGL/376-393    AC I1NJG3.1
#=GS D8T8L6_SELML/227-256    AC D8T8L6.1
#=GS D7KZF9_ARALL/766-796    AC D7KZF9.1
#=GS I1Q0W4_ORYGL/505-533    AC I1Q0W4.1
#=GS B2ZAT1_9ROSI/388-418    AC B2ZAT1.1
#=GS D8QZG1_SELML/131-161    AC D8QZG1.1
#=GS D8T0S6_SELML/214-240    AC D8T0S6.1
#=GS D8R425_SELML/7-37       AC D8R425.1
#=GS D8S5C3_SELML/42-72      AC D8S5C3.1
#=GS A5DJC1_PICGU/693-723    AC A5DJC1.2
#=GS Q6Z6Q2_ORYSJ/241-271    AC Q6Z6Q2.1
#=GS B9FAS5_ORYSJ/180-206    AC B9FAS5.1
#=GS E2LK35_MONPE/163-191    AC E2LK35.1
#=GS B8ALT6_ORYSI/77-107     AC B8ALT6.1
#=GS I0YUL1_9CHLO/149-172    AC I0YUL1.1
#=GS D8R9H3_SELML/11-40      AC D8R9H3.1
#=GS I1N9C5_SOYBN/178-208    AC I1N9C5.1
#=GS E4URE2_ARTGP/480-508    AC E4URE2.1
#=GS PP378_ARATH/251-281     AC Q9LYU9.1
#=GS I1N2U3_SOYBN/50-74      AC I1N2U3.1
#=GS C1GPD4_PARBA/776-806    AC C1GPD4.1
#=GS F2E1Y1_HORVD/184-214    AC F2E1Y1.1
#=GS I1KBK6_SOYBN/211-241    AC I1KBK6.1
#=GS I1N4H2_SOYBN/353-381    AC I1N4H2.1
#=GS I1H0A4_BRADI/295-319    AC I1H0A4.1
#=GS D8T6N2_SELML/225-253    AC D8T6N2.1
#=GS A5AIB2_VITVI/353-382    AC A5AIB2.1
#=GS I1JG81_SOYBN/250-280    AC I1JG81.1
#=GS C5Y166_SORBI/274-302    AC C5Y166.1
#=GS I1J5R2_SOYBN/374-401    AC I1J5R2.1
#=GS PP261_ARATH/217-247     AC Q9LS72.1
#=GS B6SRM3_MAIZE/393-422    AC B6SRM3.1
#=GS C5YH53_SORBI/218-245    AC C5YH53.1
#=GS A2WSM5_ORYSI/228-256    AC A2WSM5.1
#=GS F6HPG3_VITVI/270-297    AC F6HPG3.1
#=GS PPR66_ARATH/365-395     AC Q9C6R9.1
#=GS A5C8M4_VITVI/360-390    AC A5C8M4.1
#=GS A5BS92_VITVI/607-634    AC A5BS92.1
#=GS H0Z011_TAEGU/951-974    AC H0Z011.1
#=GS I1JS42_SOYBN/407-436    AC I1JS42.1
#=GS F2EEX2_HORVD/170-200    AC F2EEX2.1
#=GS D7LQ58_ARALL/166-193    AC D7LQ58.1
#=GS D7MG22_ARALL/560-590    AC D7MG22.1
#=GS D8R070_SELML/104-133    AC D8R070.1
#=GS C5Z2R1_SORBI/527-553    AC C5Z2R1.1
#=GS I1GNG2_BRADI/256-285    AC I1GNG2.1
#=GS PPR55_ARATH/359-388     AC Q4V389.1
#=GS F6HJT7_VITVI/177-202    AC F6HJT7.1
#=GS D8SYN8_SELML/157-186    AC D8SYN8.1
#=GS D8SLM0_SELML/117-146    AC D8SLM0.1
#=GS I1JN46_SOYBN/378-402    AC I1JN46.1
#=GS Q0IV66_ORYSJ/791-818    AC Q0IV66.2
#=GS I1HT64_BRADI/241-270    AC I1HT64.1
#=GS I1JVY3_SOYBN/212-242    AC I1JVY3.1
#=GS I1K977_SOYBN/69-98      AC I1K977.1
#=GS G7JZ42_MEDTR/371-397    AC G7JZ42.1
#=GS B9ICN8_POPTR/232-262    AC B9ICN8.1
#=GS I1PC10_ORYGL/513-540    AC I1PC10.1
#=GS O04624_ARATH/746-776    AC O04624.1
#=GS B9S4A9_RICCO/331-361    AC B9S4A9.1
#=GS Q69K58_ORYSJ/623-653    AC Q69K58.1
#=GS D8RRS8_SELML/102-130    AC D8RRS8.1
#=GS B9T392_RICCO/248-278    AC B9T392.1
#=GS B9S2E1_RICCO/170-197    AC B9S2E1.1
#=GS G7ICI7_MEDTR/239-269    AC G7ICI7.1
#=GS D8SM24_SELML/241-271    AC D8SM24.1
#=GS D8RQT4_SELML/476-506    AC D8RQT4.1
#=GS I1LSZ5_SOYBN/105-133    AC I1LSZ5.1
#=GS D2DI33_9LAMI/300-327    AC D2DI33.1
#=GS B4FYY0_MAIZE/143-165    AC B4FYY0.1
#=GS A5AYV4_VITVI/555-585    AC A5AYV4.1
#=GS I1PA56_ORYGL/495-521    AC I1PA56.1
#=GS B9RIL4_RICCO/168-198    AC B9RIL4.1
#=GS D8QWJ6_SELML/602-629    AC D8QWJ6.1
#=GS PP192_ARATH/324-354     AC Q9ZUT4.1
#=GS D8S3F3_SELML/36-66      AC D8S3F3.1
#=GS C0P3Q9_MAIZE/329-358    AC C0P3Q9.1
#=GS D8T241_SELML/102-126    AC D8T241.1
#=GS H3GC87_PHYRM/276-306    AC H3GC87.1
#=GS D8R6N8_SELML/38-61      AC D8R6N8.1
#=GS B9G2C6_ORYSJ/550-577    AC B9G2C6.1
#=GS F6HKM6_VITVI/148-176    AC F6HKM6.1
#=GS F4PDE7_BATDJ/592-621    AC F4PDE7.1
#=GS F6HQW5_VITVI/339-369    AC F6HQW5.1
#=GS F5CAD7_FUNHY/139-166    AC F5CAD7.1
#=GS C5YH53_SORBI/144-174    AC C5YH53.1
#=GS D8S997_SELML/24-54      AC D8S997.1
#=GS D8SC15_SELML/6-31       AC D8SC15.1
#=GS D8SZ55_SELML/29-59      AC D8SZ55.1
#=GS D7M586_ARALL/595-619    AC D7M586.1
#=GS D8R9S8_SELML/8-28       AC D8R9S8.1
#=GS Q65XK6_ORYSJ/351-381    AC Q65XK6.1
#=GS D8SDV8_SELML/204-234    AC D8SDV8.1
#=GS G4XE06_LEPSV/104-129    AC G4XE06.1
#=GS PP319_ARATH/323-350     AC Q0WNP3.1
#=GS PP131_ARATH/212-242     AC A3KPF8.1
#=GS F2EH25_HORVD/513-542    AC F2EH25.1
#=GS D2DI75_9LAMI/290-319    AC D2DI75.1
#=GS D8SZL1_SELML/77-107     AC D8SZL1.1
#=GS D8QNH1_SELML/56-85      AC D8QNH1.1
#=GS B9H819_POPTR/265-295    AC B9H819.1
#=GS D8SNT4_SELML/1559-1587  AC D8SNT4.1
#=GS A2Z1D1_ORYSI/578-605    AC A2Z1D1.1
#=GS A2ZJL4_ORYSI/345-375    AC A2ZJL4.1
#=GS D8TAA5_SELML/555-584    AC D8TAA5.1
#=GS I1GUA1_BRADI/358-385    AC I1GUA1.1
#=GS C5XUS3_SORBI/347-377    AC C5XUS3.1
#=GS D8R9H2_SELML/178-208    AC D8R9H2.1
#=GS B8APA3_ORYSI/1068-1095  AC B8APA3.1
#=GS D0FV64_ERWPE/418-446    AC D0FV64.1
#=GS C5WML0_SORBI/212-240    AC C5WML0.1
#=GS I1J9V5_SOYBN/142-172    AC I1J9V5.1
#=GS A5C1S9_VITVI/872-902    AC A5C1S9.1
#=GS B9G7S3_ORYSJ/495-525    AC B9G7S3.1
#=GS C5XWB7_SORBI/702-732    AC C5XWB7.1
#=GS Q69JJ5_ORYSJ/72-102     AC Q69JJ5.1
#=GS G7KQC4_MEDTR/320-338    AC G7KQC4.1
#=GS D7KX06_ARALL/1101-1128  AC D7KX06.1
#=GS F6GWJ6_VITVI/372-402    AC F6GWJ6.1
#=GS I1JBP1_SOYBN/155-185    AC I1JBP1.1
#=GS PP181_ARATH/358-388     AC P93005.1
#=GS D9ZR54_ARALL/45-75      AC D9ZR54.1
#=GS Q0DLJ0_ORYSJ/505-534    AC Q0DLJ0.1
#=GS D8RKJ5_SELML/91-120     AC D8RKJ5.1
#=GS I1QJW2_ORYGL/289-318    AC I1QJW2.1
#=GS D8SD02_SELML/351-378    AC D8SD02.1
#=GS I1NFE9_SOYBN/110-140    AC I1NFE9.1
#=GS I1IFQ4_BRADI/113-139    AC I1IFQ4.1
#=GS Q6ZLQ1_ORYSJ/287-317    AC Q6ZLQ1.1
#=GS H9MAE8_PINRA/7-34       AC H9MAE8.1
#=GS D8RT97_SELML/210-239    AC D8RT97.1
#=GS D8R6E5_SELML/1-28       AC D8R6E5.1
#=GS I1PSF6_ORYGL/290-320    AC I1PSF6.1
#=GS Q0DXS6_ORYSJ/529-559    AC Q0DXS6.1
#=GS A2YVI3_ORYSI/163-190    AC A2YVI3.1
#=GS D7LJ24_ARALL/63-93      AC D7LJ24.1
#=GS D2DHV4_9LAMI/404-434    AC D2DHV4.1
#=GS F6GSR2_VITVI/145-175    AC F6GSR2.1
#=GS A2XX70_ORYSI/356-383    AC A2XX70.1
#=GS F2E5B8_HORVD/305-335    AC F2E5B8.1
#=GS D8SGW2_SELML/179-206    AC D8SGW2.1
#=GS A3B7Q9_ORYSJ/406-430    AC A3B7Q9.1
#=GS I1JNP1_SOYBN/100-130    AC I1JNP1.1
#=GS D8S3G4_SELML/267-296    AC D8S3G4.1
#=GS D2DI00_9LAMI/1-30       AC D2DI00.1
#=GS C5XMG5_SORBI/145-171    AC C5XMG5.1
#=GS H2KWB6_ORYSJ/239-269    AC H2KWB6.1
#=GS Q7XHP5_ORYSJ/450-479    AC Q7XHP5.1
#=GS D7LGC7_ARALL/616-646    AC D7LGC7.1
#=GS G0T1N2_RHOG2/1119-1149  AC G0T1N2.1
#=GS I1MTV7_SOYBN/321-349    AC I1MTV7.1
#=GS I1MLB3_SOYBN/218-244    AC I1MLB3.1
#=GS B8BCQ1_ORYSI/145-174    AC B8BCQ1.1
#=GS B9IIE6_POPTR/392-421    AC B9IIE6.1
#=GS D7MA46_ARALL/84-108     AC D7MA46.1
#=GS I1HSS5_BRADI/265-292    AC I1HSS5.1
#=GS I1LIG7_SOYBN/192-222    AC I1LIG7.1
#=GS I1LEM8_SOYBN/558-587    AC I1LEM8.1
#=GS B9FZW1_ORYSJ/99-129     AC B9FZW1.1
#=GS D2DHV7_9LAMI/292-322    AC D2DHV7.1
#=GS D8RIA9_SELML/159-189    AC D8RIA9.1
#=GS D7M1A5_ARALL/250-279    AC D7M1A5.1
#=GS B9S9V6_RICCO/801-831    AC B9S9V6.1
#=GS I1IIR9_BRADI/145-175    AC I1IIR9.1
#=GS B9IK04_POPTR/484-512    AC B9IK04.1
#=GS D7M3C7_ARALL/192-220    AC D7M3C7.1
#=GS Q0J5U1_ORYSJ/519-549    AC Q0J5U1.1
#=GS G7JGW9_MEDTR/279-306    AC G7JGW9.1
#=GS C1N9Q9_MICPC/752-781    AC C1N9Q9.1
#=GS B9SD07_RICCO/268-295    AC B9SD07.1
#=GS B2B2P1_PODAN/633-660    AC B2B2P1.1
#=GS G4XDY5_AETGR/191-218    AC G4XDY5.1
#=GS A4S8Y0_OSTLU/30-50      AC A4S8Y0.1
#=GS D8RNJ8_SELML/55-85      AC D8RNJ8.1
#=GS I1LWL1_SOYBN/449-479    AC I1LWL1.1
#=GS B9GYF9_POPTR/97-123     AC B9GYF9.1
#=GS D2DHV6_9LAMI/439-469    AC D2DHV6.1
#=GS I1KHW8_SOYBN/164-194    AC I1KHW8.1
#=GS B9NAD9_POPTR/210-238    AC B9NAD9.1
#=GS B4FB32_MAIZE/81-111     AC B4FB32.1
#=GS C6TJI2_SOYBN/120-150    AC C6TJI2.1
#=GS C5Z3R2_SORBI/74-98      AC C5Z3R2.1
#=GS G8Y276_PICSO/332-358    AC G8Y276.1
#=GS D8SY21_SELML/173-203    AC D8SY21.1
#=GS B9N762_POPTR/288-316    AC B9N762.1
#=GS D8QWS0_SELML/27-57      AC D8QWS0.1
#=GS A9PHB6_POPTR/335-364    AC A9PHB6.1
#=GS B9ICU2_POPTR/48-75      AC B9ICU2.1
#=GS D8TEK9_SELML/320-350    AC D8TEK9.1
#=GS I1PSE7_ORYGL/304-329    AC I1PSE7.1
#=GS F6GTR8_VITVI/160-190    AC F6GTR8.1
#=GS B9IK55_POPTR/168-198    AC B9IK55.1
#=GS D7M3D7_ARALL/339-368    AC D7M3D7.1
#=GS B9GBQ2_ORYSJ/164-188    AC B9GBQ2.1
#=GS E0CQN7_VITVI/590-617    AC E0CQN7.1
#=GS D7MKK8_ARALL/42-66      AC D7MKK8.1
#=GS A2ZRG3_ORYSJ/1-27       AC A2ZRG3.1
#=GS G8JBG5_ORYPU/43-70      AC G8JBG5.1
#=GS F6HIZ1_VITVI/89-118     AC F6HIZ1.1
#=GS A5AR37_VITVI/1072-1102  AC A5AR37.1
#=GS D8SKW7_SELML/193-223    AC D8SKW7.1
#=GS E1C9W7_PHYPA/57-87      AC E1C9W7.1
#=GS PP413_ARATH/271-300     AC Q8L844.1
#=GS B9S769_RICCO/560-590    AC B9S769.1
#=GS I1N685_SOYBN/119-149    AC I1N685.1
#=GS PP119_ARATH/313-341     AC Q9CA73.1
#=GS C7FD07_ARALP/1-28       AC C7FD07.1
#=GS C7FBB6_ARATH/102-130    AC C7FBB6.1
#=GS I1KS45_SOYBN/718-747    AC I1KS45.1
#=GS B9SPW3_RICCO/261-291    AC B9SPW3.1
#=GS Q8LQE8_ORYSJ/132-160    AC Q8LQE8.1
#=GS F0WE43_9STRA/308-331    AC F0WE43.1
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