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Database: Pfam
Entry: Packaging_FI
LinkDB: Packaging_FI
Original site: Packaging_FI 
#=GF ID   Packaging_FI
#=GF AC   PF14000.5
#=GF DE   DNA packaging protein FI
#=GF AU   Bateman A
#=GF SE   Jackhmmer:B2PPD2
#=GF GA   27.00 27.00;
#=GF TC   28.40 37.80;
#=GF NC   24.10 25.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   8468297
#=GF RT   Sites and gene products involved in lambdoid phage DNA
#=GF RT   packaging.
#=GF RA   Smith MP, Feiss M;
#=GF RL   J Bacteriol. 1993;175:2393-2399.
#=GF DR   INTERPRO; IPR025147;
#=GF CC   This family includes the lambda phage DNA-packaging protein FI.
#=GF CC   Proteins in this family are typically between 124 and 140 amino
#=GF CC   acids in length.  There is a conserved EEE sequence motif.
#=GF SQ   17
#=GS A0A0T7RUN8_SALET/3-121   AC A0A0T7RUN8.1
#=GS X1WK63_ACYPI/80-190      AC X1WK63.1
#=GS A0A083ZYT0_9GAMM/2-129   AC A0A083ZYT0.1
#=GS A0A0B8YBC3_9SPHI/15-142  AC A0A0B8YBC3.1
#=GS J9JUN9_ACYPI/332-421     AC J9JUN9.2
#=GS X1XJK9_ACYPI/10-95       AC X1XJK9.1
#=GS D3AUQ2_9CLOT/15-142      AC D3AUQ2.1
#=GS O64323_BPN15/3-141       AC O64323.1
#=GS A0A066UJV0_9GAMM/2-129   AC A0A066UJV0.1
#=GS J9KTE3_ACYPI/13-92       AC J9KTE3.2
#=GS X1WR78_ACYPI/3-57        AC X1WR78.1
#=GS FI_LAMBD/2-129           AC P03709.1
#=GS FI_LAMBD/2-129           DR PDB; 2LSM A; 72-129;
#=GS A0A0J5KR44_PLUGE/2-125   AC A0A0J5KR44.1
#=GS A0A021X5Z3_9RHIZ/2-129   AC A0A021X5Z3.1
#=GS R8AR53_PLESH/3-60        AC R8AR53.1
#=GS Q8ZMZ9_SALTY/3-116       AC Q8ZMZ9.1
#=GS V5AZG1_9GAMM/2-129       AC V5AZG1.1
A0A0T7RUN8_SALET/3-121              .........TKEENVARLQVLAVQLGREADISGSAAEIRQRVAEWEEEAG....---.---GM---SDKED..DETTAE.VSRDEPE...SAKSN...---TYFSEFVLIRAVRTLHIDALAADSDRVLDTVPAGDSARIPAIYVDELAGDGLI......................................
X1WK63_ACYPI/80-190                 .........EKKKLIARLNDLGTQLNREVSTYGTIHELTMRIADLEEELDgdasSIDgENGEKNAPDSTDS..TDSTDSdVD----G...TEKVK...TEAVTTDDRVSVKTLVTLHINALHATRNESVSIV----------------------......................................
A0A083ZYT0_9GAMM/2-129              .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD.ETAGQDTPLSRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTDALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA......................................
A0A0B8YBC3_9SPHI/15-142             .........TKNELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD.ETAGQDTPLSRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTDALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA......................................
J9JUN9_ACYPI/332-421                .........EKEKLIARLNDLGTQLNGKVSTNGTIQELTMRIDELEKELDgdacSID.VSNS---------..------.-------...-----...--------------------------------------------------------nnpftdinlpcnpilgdtlsidsinladndfenvlfss
X1XJK9_ACYPI/10-95                  .evprlekn-----------------------------------------....---.------A------..PDSTDR.TDCTDSDvdgTEKVK...TEAVTTDDRVSVETLVTLHIYALPATRNESVSIVEPGDVIRVTDGEANDLISRALA......................................
D3AUQ2_9CLOT/15-142                 .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD.ETAGQDTPLSRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTDALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA......................................
O64323_BPN15/3-141                  .........EKEKLIARLNELGTQLNREVSTSGTIQELTMRIAELEEELDgdatSVDgESGGQNAADSTDS..TDSTDS.TDSTDSD...VADVEkvkSEAGTNGDQVSVETLATLHVEALHATRNEPVSIVEPGVIIRVSEQDADELISKGLA......................................
A0A066UJV0_9GAMM/2-129              .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD.ETAGQDTPLSRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTDALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA......................................
J9KTE3_ACYPI/13-92                  nnthydldg--------------------------------------DAI....SIDgENGEKNAPDSTDS..TDSTDSdVD----G...TEKVK...TDAVTTDDRVSVETLVTLHINALHATRND---------------------------lfipida...............................
X1WR78_ACYPI/3-57                   .........KKENLIARLNDLGTHLSREVSSSGFIQELTMRIAELEKELD....-GD.-------------..------.-------...-----...--------------------------------------------------------assidapifagv..........................
FI_LAMBD/2-129                      .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD.ETAGQDTPLSRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTDALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA......................................
#=GR FI_LAMBD/2-129           SS    .........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXX.XXXXXXXXXXXXXXXXXXXXX.XXXXX--...-----...------S--EEEEESS-B---EE-SSSS-EES-B-TT-EEEE-HHHHHHHHHTTSE......................................
A0A0J5KR44_PLUGE/2-125              .........TKEELIARLKALAEQLGRDVNLTGSKEDLAMRVAELEEEIG....--D.EGDGESDAGDNEQ..AGGETT.AQA----...TGSVP...KGNV-QDSLIRIKTLFSLHVEAWHELSDEPMSLVEPGVVVRVSPADAQELFTRKLA......................................
A0A021X5Z3_9RHIZ/2-129              .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD.ETAGQDTPLSRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTDALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA......................................
R8AR53_PLESH/3-60                   .........QKEELITQLNALSEQLGRKLPVTGSLADLQQRVREAQEELA....EMD.DV-----------..------.-------...-----...--------------------------------------------------------prvsgeksaakg..........................
Q8ZMZ9_SALTY/3-116                  .........TKEENIQRLRELATRLGRDPDVSGSAAELSQRVMEWEEEAE....---.-------------..AEHLPA.VEN-DSD...ESIVP...PGIGQRSERVLIRALRTLHICAIDPDSNRELDMVMAGNPARISQHDVDELIAAGLI......................................
V5AZG1_9GAMM/2-129                  .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD.ETAGQDTPLSRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTDALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA......................................
#=GC SS_cons                        .........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXX.XXXXXXXXXXXXXXXXXXXXX.XXXXX--...-----...------S--EEEEESS-B---EE-SSSS-EES-B-TT-EEEE-HHHHHHHHHTTSE......................................
#=GC seq_cons                       .........pK-ELIARLpsLGpQLsR-VSloGohpELshRVAELcEELD....shD.Essupsss.sp-s..ssppsp.Vss.ps-...Tshlc........ss-hVoVhsLspLHhsALHATRsEsluhV.sGsshRlott.ssEhhtcuLh......................................
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