GenomeNet

Database: Pfam
Entry: Packaging_FI
LinkDB: Packaging_FI
Original site: Packaging_FI 
#=GF ID   Packaging_FI
#=GF AC   PF14000.4
#=GF DE   DNA packaging protein FI
#=GF AU   Bateman A
#=GF SE   Jackhmmer:B2PPD2
#=GF GA   27.00 27.00;
#=GF TC   38.00 42.30;
#=GF NC   24.10 21.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   8468297
#=GF RT   Sites and gene products involved in lambdoid phage DNA
#=GF RT   packaging.
#=GF RA   Smith MP, Feiss M;
#=GF RL   J Bacteriol. 1993;175:2393-2399.
#=GF DR   INTERPRO; IPR025147;
#=GF CC   This family includes the lambda phage DNA-packaging protein FI.
#=GF CC   Proteins in this family are typically between 124 and 140 amino
#=GF CC   acids in length.  There is a conserved EEE sequence motif.
#=GF SQ   10
#=GS X1WK63_ACYPI/80-190   AC X1WK63.1
#=GS X1WR78_ACYPI/3-57     AC X1WR78.1
#=GS FI_LAMBD/2-129        AC P03709.1
#=GS FI_LAMBD/2-129        DR PDB; 2LSM A; 72-129;
#=GS X1XJK9_ACYPI/10-95    AC X1XJK9.1
#=GS J9JUN9_ACYPI/332-421  AC J9JUN9.2
#=GS I6HDW7_SHIFL/3-125    AC I6HDW7.1
#=GS O64323_BPN15/3-141    AC O64323.1
#=GS I6H7W5_SHIFL/3-130    AC I6H7W5.1
#=GS Q8ZMZ9_SALTY/3-116    AC Q8ZMZ9.1
#=GS J9KTE3_ACYPI/13-92    AC J9KTE3.2
X1WK63_ACYPI/80-190              .........EKKKLIARLNDLGTQLNREVSTYGTIHELTMRIADLEEELDgdasSIDgENGEKNAPD.STDS..TDSTDSdVD----G...TEKVK...TEAVTTDDRVSVKTLVTLHINALHATRNESVSIV----------------------......................................
X1WR78_ACYPI/3-57                .........KKENLIARLNDLGTHLSREVSSSGFIQELTMRIAELEKELD....-GD.---------.----..------.-------...-----...--------------------------------------------------------assidapifagv..........................
FI_LAMBD/2-129                   .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD.ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTDALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA......................................
#=GR FI_LAMBD/2-129        SS    .........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXX.XXXXXXXXX.XXXXXXXXXXXX.XXXXX--...-----...------S--EEEEESS-B---EE-SSSS-EES-B-TT-EEEE-HHHHHHHHHTTSE......................................
X1XJK9_ACYPI/10-95               .evprlekn-----------------------------------------....---.------A--.----..PDSTDR.TDCTDSDvdgTEKVK...TEAVTTDDRVSVETLVTLHIYALPATRNESVSIVEPGDVIRVTDGEANDLISRALA......................................
J9JUN9_ACYPI/332-421             .........EKEKLIARLNDLGTQLNGKVSTNGTIQELTMRIDELEKELDgdacSID.VSNS-----.----..------.-------...-----...--------------------------------------------------------nnpftdinlpcnpilgdtlsidsinladndfenvlfss
I6HDW7_SHIFL/3-125               .........TKEENLKRLCELAERLGREPDVSGSAADIAQRVAELEEELG....DAG.EVAEPDTYSpSKDD.pTAHKG-.-ESVPEQ...PGIVT...---GDETGQVTVVALATLHTK-----CNGSVIFVSPGTSFRVSAEVAASMAAGGLA......................................
O64323_BPN15/3-141               .........EKEKLIARLNELGTQLNREVSTSGTIQELTMRIAELEEELDgdatSVDgESGGQNAAD.STDS..TDSTDS.TDSTDSD...VADVEkvkSEAGTNGDQVSVETLATLHVEALHATRNEPVSIVEPGVIIRVSEQDADELISKGLA......................................
I6H7W5_SHIFL/3-130               ........k-KDDNLKRLRELAASLGREPDISGSAADIAQRVAELEEELA....NMD.DTDIRDKSA.HPENalTGHENE.VISAQPE...TVIQN...-----MDDLVTVVALVTLHTDALHATRDEPLAFVPPGMAFRVFAGVAAGMTERGLA......................................
Q8ZMZ9_SALTY/3-116               .........TKEENIQRLRELATRLGRDPDVSGSAAELSQRVMEWEEEAE....---.---------.----..AEHLPA.VEN-DSD...ESIVP...PGIGQRSERVLIRALRTLHICAIDPDSNRELDMVMAGNPARISQHDVDELIAAGLI......................................
J9KTE3_ACYPI/13-92               nnthydldg--------------------------------------DAI....SIDgENGEKNAPD.STDS..TDSTDSdVD----G...TEKVK...TDAVTTDDRVSVETLVTLHINALHATRND---------------------------lfipida...............................
#=GC SS_cons                     .........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXX.XXXXXXXXX.XXXXXXXXXXXX.XXXXX--...-----...------S--EEEEESS-B---EE-SSSS-EES-B-TT-EEEE-HHHHHHHHHTTSE......................................
#=GC seq_cons                    .........pK-c.ItRLp-LuspLsR-sssoGohtELs.RlAELEEEL-....shD.-sst.ss...p.-s..Tsppsp.s-s...s...sthVp......spps-pVoV.sLsTLHhpALcATRN-slshV.sG..hRl.tt.ssthhttuLh......................................
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