GenomeNet

Database: Pfam
Entry: Phage-MuB_C
LinkDB: Phage-MuB_C
Original site: Phage-MuB_C 
#=GF ID   Phage-MuB_C
#=GF AC   PF09077.10
#=GF DE   Mu B transposition protein, C terminal 
#=GF AU   Sammut SJ
#=GF SE   pdb_1f6v
#=GF GA   25.00 25.00;
#=GF TC   25.60 28.70;
#=GF NC   23.10 24.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   11060014
#=GF RT   The solution structure of the C-terminal domain of the Mu B
#=GF RT   transposition protein. 
#=GF RA   Hung LH, Chaconas G, Shaw GS; 
#=GF RL   EMBO J. 2000;19:5625-5634.
#=GF DR   INTERPRO; IPR009084;
#=GF DR   SCOP; 1f6v; fa;
#=GF CC   The C terminal domain of the B transposition protein from
#=GF CC   Bacteriophage Mu comprises four alpha-helices arranged in a
#=GF CC   loosely packed bundle, where helix alpha1 runs parallel to
#=GF CC   alpha3, and anti-parallel to helices alpha2 and alpha4. The
#=GF CC   domain allows for non-specific binding of Mu to double-stranded
#=GF CC   DNA, allowing for integration into the bacterial genome, and
#=GF CC   mediates dimerisation of the protein [1].
#=GF SQ   55
#=GS H4F6X0_9RHIZ/257-334      AC H4F6X0.1
#=GS S6FEP4_AVIPA/230-309      AC S6FEP4.1
#=GS W1IPJ6_9GAMM/236-312      AC W1IPJ6.1
#=GS A0A0F5P8Y7_9SPHN/232-308  AC A0A0F5P8Y7.1
#=GS A0A0P8YZP8_9RHOB/147-223  AC A0A0P8YZP8.1
#=GS D2TQ33_CITRI/223-300      AC D2TQ33.1
#=GS J8T6B2_PASMD/58-111       AC J8T6B2.1
#=GS A0A085H929_9GAMM/224-302  AC A0A085H929.1
#=GS G6XKZ8_9PROT/212-290      AC G6XKZ8.1
#=GS A0A0Q8ANK8_9RHIZ/266-342  AC A0A0Q8ANK8.1
#=GS A0A0N8H0T3_9SPHN/239-318  AC A0A0N8H0T3.1
#=GS Q7VPI3_HAEDU/222-301      AC Q7VPI3.1
#=GS B8FGN5_DESAA/239-315      AC B8FGN5.1
#=GS F9Q9L3_9PAST/222-301      AC F9Q9L3.1
#=GS Q1JYS0_DESAC/244-321      AC Q1JYS0.1
#=GS I2BC29_SHIBC/226-303      AC I2BC29.1
#=GS M4RAU7_BIBTR/222-301      AC M4RAU7.1
#=GS B8GS43_THISH/242-319      AC B8GS43.1
#=GS H6SNB5_RHOPH/228-305      AC H6SNB5.1
#=GS F4HC55_GALAU/222-301      AC F4HC55.1
#=GS M9WZ10_MANHA/230-308      AC M9WZ10.1
#=GS Q8EDT8_SHEON/239-314      AC Q8EDT8.1
#=GS VPB_HAEIN/222-276         AC P96343.1
#=GS A9ID00_BORPD/240-318      AC A9ID00.1
#=GS A0A081B6F7_9RHIZ/239-316  AC A0A081B6F7.1
#=GS D3V956_XENNA/236-312      AC D3V956.1
#=GS A0A0P0P1H9_9CAUL/245-327  AC A0A0P0P1H9.1
#=GS A0A080M4X6_9PROT/299-347  AC A0A080M4X6.1
#=GS C9R6S1_AGGAD/222-301      AC C9R6S1.1
#=GS A8LKK5_DINSH/173-248      AC A8LKK5.1
#=GS K2IXQ7_9GAMM/231-308      AC K2IXQ7.1
#=GS B9JYV7_AGRVS/264-340      AC B9JYV7.1
#=GS A0A0P7ZYF5_9RHOB/166-244  AC A0A0P7ZYF5.1
#=GS A0A0D6NT51_9PROT/188-261  AC A0A0D6NT51.1
#=GS T0IT41_9SPHN/234-312      AC T0IT41.1
#=GS A0A0D5LWN7_9RHIZ/257-333  AC A0A0D5LWN7.1
#=GS A0A071M5D7_9ENTR/143-220  AC A0A071M5D7.1
#=GS D5RM54_9PROT/238-316      AC D5RM54.1
#=GS A0A090ILC2_9GAMM/240-317  AC A0A090ILC2.1
#=GS E2CI33_9RHOB/261-338      AC E2CI33.1
#=GS B9JYF2_AGRVS/260-336      AC B9JYF2.1
#=GS S6EDS3_AVIPA/230-309      AC S6EDS3.1
#=GS A0A0C5L7I7_9SPHN/235-313  AC A0A0C5L7I7.1
#=GS A7INZ9_XANP2/232-310      AC A7INZ9.1
#=GS A0A0B3RY51_9RHOB/185-260  AC A0A0B3RY51.1
#=GS A0A0S6X0P8_9SPHN/240-317  AC A0A0S6X0P8.1
#=GS U3U117_9ENTR/1-63         AC U3U117.1
#=GS F4QGC4_9CAUL/236-315      AC F4QGC4.1
#=GS A0A0Q7YAJ9_9RHIZ/256-332  AC A0A0Q7YAJ9.1
#=GS A9D2U3_HOEPD/271-347      AC A9D2U3.1
#=GS A0A0P7KPJ3_9RHOB/255-331  AC A0A0P7KPJ3.1
#=GS S6EPM8_AVIPA/222-301      AC S6EPM8.1
#=GS TARGB_BPMU/223-300        AC P03763.1
#=GS TARGB_BPMU/223-300        DR PDB; 1F6V A; 2-79;
#=GS M4NG66_9GAMM/238-315      AC M4NG66.1
#=GS A0A0F5EXB7_AVIPA/223-302  AC A0A0F5EXB7.1
H4F6X0_9RHIZ/257-334                 ....t-RFDRRLKREKDPVQDAAMLIRAW.....GI..EEKDCVTFLH..GIAT.KP..G..ALRNIDRTIKAAMMAALGNG.EEL.TMNYLVASWR--nr.....
S6FEP4_AVIPA/230-309                 .....SRSAKNESIQHCKKEDIVAIANAW.....QLdtTDKKLISLLA..ETGK.RG..G..GLRILTQVLRLAWFSANGDN.KRL.DYDYILAAKNEL.......
W1IPJ6_9GAMM/236-312                 .....SRIAKKVAILKTKKDDVQAISAAW.....GL..-GQQERALVH..QLAE.RP..G..ALRTVSHTLRLAAMFASGAN.ESL.SEKHIRAAVKDL.......
A0A0F5P8Y7_9SPHN/232-308             .....SRFSYRHVQYEPLPGDIEALLSAW.....SV..TDAEQATFLR..KIGA.LP..G..ALRELTHILEIASLTASGAG.QPI.SIAHLRDAAK--r......
A0A0P8YZP8_9RHOB/147-223             ....r-RVMARTTAMKVYEEDIPTFLDAW.....GL..EDSALRTAAT..IILK.KP..G..AYGSLTETLVAASMIARGNN.RSL.TVDDLRAAYR--r......
D2TQ33_CITRI/223-300                 .....SRLARTKQLRKAKKADVLAIARAW.....GI..SGEAELAVMQ..AIAE.KP..G..ALRVLTHTLNQAWITASGEG.AAL.TEKHINAAFKE-v......
J8T6B2_PASMD/58-111                  .....SRIAKNTSIQKTKQADTKAVATAW.....GL.nEDEEALKVMQ..SITE.TG..G..GLRILTQTLR----------.---.------------.......
A0A085H929_9GAMM/224-302             .....SRVARFKRIGRASIADVDAIAKAW.....GL..GGKEELAAVQ..EITS.QP..G..ALRILSHTINQAWITAQGMG.QGTlSAEHIKATYKSM.......
G6XKZ8_9PROT/212-290                 .....SRIGMRKNRKQPQVKDTRAIFDAW.....GI..DDANLFQLCR..WIAG.QP..G..GLRSMNKTLRYAWMIAASDE.RNQiTERDIQSAWSSL.......
A0A0Q8ANK8_9RHIZ/266-342             ....r-RIGKRLLRNKPYMDDLRTFISAW.....GV..SDPDAVKFLI..GVGN.KG..G..ALGQIDKTVKLASMLATGCG.EPI.SLKHLQGAWK--n......
A0A0N8H0T3_9SPHN/239-318             ....r-RISHRHIQKVPTEGDVETFCDAW.....GI..KQGDMRGYLR..RIAL.TPhaG..GLGECQQLIEAASLIADGED.REFlSVTDLRDAQ---ma.....
Q7VPI3_HAEDU/222-301                 .....NRIGKKCQIKASKKGDIKAVAQAW.....GLdvQDKDLMTVLY..DIGG.KA..G..GLRALTQYLRLAGMTAKGQG.TGI.TLDLILTAQAEM.......
B8FGN5_DESAA/239-315                 .....SRIGRKLRLKKPSENDIKAICQAM.....GV..TEPMAQKYCV..EIAH.KP..E..AMRGMIETIQVAALFANGAG.QEL.GLKHIKAAWKD-.......
F9Q9L3_9PAST/222-301                 .....SRIGNNCGVKASTKGDIKAIAQAW.....GLdiADKDLMTVLY..DIGG.KA..G..GLRALTQYLRLAGMTAKGQG.TVI.TLDLILTAQAQM.......
Q1JYS0_DESAC/244-321                 .....SRLGKRLRLNKPRKEDVVAVANSF.....SV..AGDQEQKALY..EISQ.KP..G..ALRGVVKTLRLATMFAAGDN.EAV.QLEHIRAAWHDL.......
I2BC29_SHIBC/226-303                 .....SRIAKRVAINKTKKADVTAIADAW.....HI..TGEKERDLLQ..QIAQ.KP..G..ALRILSHSLRLAAMTAHGAG.HEV.SEGYIRKALRDL.......
M4RAU7_BIBTR/222-301                 .....SRISKHVSIQKCKKNDVVAIANAW.....GLdtNDQEMMSLLS..EIGA.GG..G..GLRSLTQTLRLAGIHAKGQD.SVI.TRDLVLAAQAEL.......
B8GS43_THISH/242-319                 .....SRQGKWVGIQKTTAKDIAALVAAW.....HI..DDSRVMDAAQ..EIGS.RP..G..GLRGLTKALRLASMFAAGEG.GAM.QREHLVQAWRDL.......
H6SNB5_RHOPH/228-305                 .....SRLGRRVTLGKPSRPDVSALASGF.....GI..TGREEADLLY..SLSQ.YP..G..GLRCVVKVIRLALLTALGTD.TPA.SMKRLAAAWSEL.......
F4HC55_GALAU/222-301                 .....SRIGNHCGLKASTKGDIKAIASAW.....GLdiNDKDLMTVLF..DIGG.KA..G..GLRALTQYLRLAGMTAKGQG.TAM.TLDLILQAKQQM.......
M9WZ10_MANHA/230-308                 .....SRSAKRTSIQKTKKEDTQAVAKAW.....GL.sENQEALKVMQ..AITE.TG..G..GLRILTHTLRLAAMVAKDRM.IPL.TADLIQLARKDL.......
Q8EDT8_SHEON/239-314                 .....SRIAKKLSINKTKQADVRAIAKAW.....NL..QHDAEISLMI..QISE.KP..G..GLRLLSKTLKLAAMFAKGAA.I--.TEALLRTAFNEL.......
VPB_HAEIN/222-276                    .....SRVAKNTSIQKTKKADTQAVAQAW.....GL.eTDEEALKVMQ..SITE.TG..G..GLRILTQT------------.---.------------yac....
A9ID00_BORPD/240-318                 .....SRVAKRVRLSRAKDADVLTLLDAW.....RI..EDAEARQLCL..GIGR.RP..G..ALRGLSQTLRLASMFAATSG.AARpTAEHVRDAWQDL.......
A0A081B6F7_9RHIZ/239-316             .....SRVGVRVTQARPKAKDICAIIDAW.....KI..TEDEEVRLLK..AIGR.KP..G..ALRGLTKCLQLATVLASGEG.EER.NLKHIKAAFER-l......
D3V956_XENNA/236-312                 .....SRIAKKVAILKTKKDDVQAISAAW.....GL..-GQQERALVH..QLAE.RP..G..ALRTVSHTLRLAAMFARGAN.ETL.SETHIRAAVKDL.......
A0A0P0P1H9_9CAUL/245-327             .....SRVAQRRVILKPDPRDVSAYAQAWadangEV..LTKRELDFLQ..AIAA.RP..G..GLRNVEMTFEGALLVSLNSD.RPL.NVEHLQGAFAQL.......
A0A080M4X6_9PROT/299-347             .tlpa-----------LTREDVLTVAAAW.....GV..TGVEERAYCL..KAAA.QP..G..ALRNLSNIFRL---------.---.------------sl.....
C9R6S1_AGGAD/222-301                 ....t-RLGHRCPIKASTKGDIKAITEAW.....GLdsGDKDLMTVLN..NIGT.KA..G..GLRALTQYLRLAAISAKAQG.AAI.TLDMILTAQKQM.......
A8LKK5_DINSH/173-248                 ....r-RMVRPVVIRSVPKPDVLAVVRSR.....GI..TDPAICDALS..VMAR.RY..G..GLADVQRTLAQAAKHASSDK.I--.AASDVKAAM---lyl....
K2IXQ7_9GAMM/231-308                 .....SRIAKKMGVHKAKQTDVKAIAAAW.....GI..SGNGELALLQ..QIAE.RP..G..ALRILNQTLRLAAMLAGGSD.QSL.GEQHIRAAFKDL.......
B9JYV7_AGRVS/264-340                 .....SRIGKRLQRVQPYPEDLQTYIAAW.....SV..TDPACIKFLM..GIGM.KG..G..AFRQIEKTMRMARMVATGEG.TEV.SLKFIQAAWK--n......
A0A0P7ZYF5_9RHOB/166-244             srvha---SRPVIIKQASRADVACLVDGT.....AF..ATDAAIKLLH..AVAQvRD..G..GLRNVEAAMHQATLFAGADR.P--.TVEHLAWAIRDL.......
A0A0D6NT51_9PROT/188-261             ....g-RLGQKMVNLAISEEDVRAVCKHL.....NI..MGEKEFALLY..RVGR.ER..G..GLHNIKRVVEMAEQIADGKH.ITL.S-----------tlktsia
T0IT41_9SPHN/234-312                 .....SRISKRIVQDRPEEGDVTAFCDAW.....KL..FDPGIRKLLM..DVAL.MPgsG..ALREIRQIIENASMAASEDG.GKL.ELAHVRWAVED-.......
A0A0D5LWN7_9RHIZ/257-333             ....r-RIGKRLNRRQPLRQDLEAFIDAW.....GV..TDPVAVKTLI..GMGL.KG..G..ALGQIDKTLKLAAMLAMAND.EPI.NARHVETAWK--n......
A0A071M5D7_9ENTR/143-220             .....SRVAKKVVINNIKAGDVDAFCDAW.....NV..AGKDERQLLK..AIAK.RP..G..ALRSLSHILPLAHIYASGKG.EPV.NTGHIHSAMLEL.......
D5RM54_9PROT/238-316                 .....SRLGMRIRKVRPTPGDIDAVLNAW.....KV..EDQQSRRVLH..VIGK.RP..G..ALRNVVKTLKLAHIRASGDGlTEI.SAPMLDWAWSR-l......
A0A090ILC2_9GAMM/240-317             .....SRIAKKLVIHKVKKRDISDVADAW.....GL..RGKDERVLIE..QIAS.KP..G..GLRTLFQTLRLAAMVAKGQN.QTI.NAQHIKYAFNDL.......
E2CI33_9RHOB/261-338                 .....SRFGKRISREKPYPEDINMFIKAW.....DI..EEPKAVAMLR..GIAR.KG..G..ALRQIDKTMKLASMLAIGDG.SNLvSVEHIEQAWT--n......
B9JYF2_AGRVS/260-336                 .....SRIGKRLQRVQPYPDDLQTYIAAW.....NV..TDPACIKFLM..GIGL.KG..G..AFRQIEKTMRMALMVALGAG.TEV.GLKDIQAAWK--n......
S6EDS3_AVIPA/230-309                 .....SRSAKNESIQHCKKEDIVAIANAW.....QLdtTDKKLISLLA..ETGK.RG..G..GLRILTQVLRLAWFSANGDN.KRL.DYDYILAAKNEL.......
A0A0C5L7I7_9SPHN/235-313             .....SRIAMDHHQDMPRPEDVSVYLDNA.....GI..ESDDVRQLLSrrALAR.DS..G..GLREIQKVIELAHKLAIGED.TVV.ADQHFRDALQ--v......
A7INZ9_XANP2/232-310                 .....SRVGARFVGASAKARDIEMLIAAW.....GV..TDEGVTKVLR..AIAR.KP..G..ALRLVGKTIRAASMYAEAEE.IGQiSATHIRQAWSQL.......
A0A0B3RY51_9RHOB/185-260             .....SRIIRPVVIPHVSRADLAAVLEGT.....AF..MQSEMINTLH..KMCV.LK..G..GLRHVEKVTRHAQRFAGGAT.P--.TLAHLEAAISDM.......
A0A0S6X0P8_9SPHN/240-317             .....SRVGMRLIRMLPLQADMDALAQAW.....NI..HGPREIAQIR..KVAS.LP..G..GLRNATKMLELGAMMAASEN.APL.AADHMQDAWAQL.......
U3U117_9ENTR/1-63                    ....m-----------------AAIAAAW.....GI..TGESELTLVQ..AIAQ.KA..G..ALRVLSHTLRQAWLMASGDA.QAQlGEKYIKAAFRE-v......
F4QGC4_9CAUL/236-315                 .....SRIAKREIFRSPVGYDIKMMLEAW.....EV..TDSIEIAFLT..SIAM.RP..GggALRQMSRVLELATWMARGEK.AKR.DLRYIKEAADDL.......
A0A0Q7YAJ9_9RHIZ/256-332             ....r-RIGKHLKRQKPYAEDIASYIAAW.....GI..SDPDSVKLLT..GIGL.KG..G..ALGQIDKTMKLATMIAIGED.RDV.TVKDIEAAWK--n......
A9D2U3_HOEPD/271-347                 ....r-RIGKRVRLAKPRAEDINALLDAW.....AI..TDPDTRKVLT..GIGM.KD..G..ALGQIDKTLKLASMTAAANG.KPV.DAAAVRAAWS--n......
A0A0P7KPJ3_9RHOB/255-331             ....r-RVGNRLSVMKPYAEDIETFLNAW.....GI..EDPELRKVGT..KIAQ.KP..G..ALGSLIQTLKAASMIANGMG.VSL.TPEILRAAY---er.....
S6EPM8_AVIPA/222-301                 .....SRSAKNESIQHCKKEDIVAIANAW.....QLdtTDKKLISLLA..ETGK.RG..G..GLRILTQVLRLAWFSANGDN.KRL.DYDYILAAKNEL.......
TARGB_BPMU/223-300                   .....SRIAKRTAINKTKKADVKAIADAW.....QI..NGEKELELLQ..QIAQ.KP..G..ALRILNHSLRLAAMTAHGKG.ERV.NEDYLRQAFREL.......
#=GR TARGB_BPMU/223-300        SS    .....-----TT--SS-SGGGTTHHHHSS.....SS..SSSHHHHHHH..TTSS.S-..S..-HHHHHHHHGGGT-TT-TTS.--S.SHHHHHHHHTSS.......
M4NG66_9GAMM/238-315                 .....SRVGKRLRLQQSTEADIVALIKAW.....GI..TDTKCHPTLI..SIAR.GA..G..ALRTLTKTLRLASMYAAAEG.RTV.CCEDVRAAASEL.......
A0A0F5EXB7_AVIPA/223-302             .....SRSAKNESIQHCKKEDIVAIANAW.....QLdtTDKKLISLLA..ETGK.RG..G..GLRILTQVLRLAWFSANGDN.KRL.DYDYILAAKNEL.......
#=GC SS_cons                         .....-----TT--SS-SGGGTTHHHHSS.....SS..SSSHHHHHHH..TTSS.S-..S..-HHHHHHHHGGGT-TT-TTS.--S.SHHHHHHHHTSS.......
#=GC seq_cons                        .....SRlu++hslp+spptDlpAlssAW.....ul..s-pcthslLp..pIup.+s..G..uLRtls+oL+LAshhApGps.psl.shcalpsAhpp........
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