GenomeNet

Database: Pfam
Entry: Phage-MuB_C
LinkDB: Phage-MuB_C
Original site: Phage-MuB_C 
#=GF ID   Phage-MuB_C
#=GF AC   PF09077.9
#=GF DE   Mu B transposition protein, C terminal 
#=GF AU   Sammut SJ
#=GF SE   pdb_1f6v
#=GF GA   25.00 25.00;
#=GF TC   30.30 33.50;
#=GF NC   23.10 21.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   11060014
#=GF RT   The solution structure of the C-terminal domain of the Mu B
#=GF RT   transposition protein. 
#=GF RA   Hung LH, Chaconas G, Shaw GS; 
#=GF RL   EMBO J. 2000;19:5625-5634.
#=GF DR   INTERPRO; IPR009084;
#=GF DR   SCOP; 1f6v; fa;
#=GF CC   The C terminal domain of the B transposition protein from
#=GF CC   Bacteriophage Mu comprises four alpha-helices arranged in a
#=GF CC   loosely packed bundle, where helix alpha1 runs parallel to
#=GF CC   alpha3, and anti-parallel to helices alpha2 and alpha4. The
#=GF CC   domain allows for non-specific binding of Mu to double-stranded
#=GF CC   DNA, allowing for integration into the bacterial genome, and
#=GF CC   mediates dimerisation of the protein [1].
#=GF SQ   35
#=GS A0A0F5P8Y7_9SPHN/232-308  AC A0A0F5P8Y7.1
#=GS D2TQ33_CITRI/223-300      AC D2TQ33.1
#=GS J8T6B2_PASMD/58-111       AC J8T6B2.1
#=GS G6XKZ8_9PROT/212-290      AC G6XKZ8.1
#=GS Q7VPI3_HAEDU/222-301      AC Q7VPI3.1
#=GS B8FGN5_DESAA/239-315      AC B8FGN5.1
#=GS Q1JYS0_DESAC/244-321      AC Q1JYS0.1
#=GS F9Q9L3_9PAST/222-301      AC F9Q9L3.1
#=GS I2BC29_SHIBC/226-303      AC I2BC29.1
#=GS M4RAU7_BIBTR/222-301      AC M4RAU7.1
#=GS B8GS43_THISH/242-319      AC B8GS43.1
#=GS H6SNB5_RHOPH/228-305      AC H6SNB5.1
#=GS Q8EDT8_SHEON/239-314      AC Q8EDT8.1
#=GS M9WZ10_MANHA/230-308      AC M9WZ10.1
#=GS F4HC55_GALAU/222-301      AC F4HC55.1
#=GS VPB_HAEIN/222-276         AC P96343.1
#=GS A9ID00_BORPD/240-318      AC A9ID00.1
#=GS D3V956_XENNA/236-312      AC D3V956.1
#=GS C9R6S1_AGGAD/222-301      AC C9R6S1.1
#=GS A8LKK5_DINSH/173-248      AC A8LKK5.1
#=GS K2IXQ7_9GAMM/231-308      AC K2IXQ7.1
#=GS B9JYV7_AGRVS/264-340      AC B9JYV7.1
#=GS A0A0D5LWN7_9RHIZ/257-333  AC A0A0D5LWN7.1
#=GS D5RM54_9PROT/238-316      AC D5RM54.1
#=GS A0A090ILC2_9GAMM/240-317  AC A0A090ILC2.1
#=GS E2CI33_9RHOB/261-338      AC E2CI33.1
#=GS B9JYF2_AGRVS/260-336      AC B9JYF2.1
#=GS A0A0C5L7I7_9SPHN/235-313  AC A0A0C5L7I7.1
#=GS A7INZ9_XANP2/232-310      AC A7INZ9.1
#=GS U3U117_9ENTR/1-63         AC U3U117.1
#=GS F4QGC4_9CAUL/236-315      AC F4QGC4.1
#=GS A9D2U3_HOEPD/271-347      AC A9D2U3.1
#=GS M4NG66_9GAMM/238-315      AC M4NG66.1
#=GS TARGB_BPMU/223-300        AC P03763.1
#=GS TARGB_BPMU/223-300        DR PDB; 1F6V A; 2-79;
#=GS A0A0F5EXB7_AVIPA/223-302  AC A0A0F5EXB7.1
A0A0F5P8Y7_9SPHN/232-308             .SRFSYRHVQYEPLPGDIEALLSAWSV..TDAEQATFLR..KIGALPG..ALRELTHILEIASLTASGAG.QPI.SIAHLRDAAK--r..
D2TQ33_CITRI/223-300                 .SRLARTKQLRKAKKADVLAIARAWGI..SGEAELAVMQ..AIAEKPG..ALRVLTHTLNQAWITASGEG.AAL.TEKHINAAFKE-v..
J8T6B2_PASMD/58-111                  .SRIAKNTSIQKTKQADTKAVATAWGL.nEDEEALKVMQ..SITETGG..GLRILTQTLR----------.---.------------...
G6XKZ8_9PROT/212-290                 .SRIGMRKNRKQPQVKDTRAIFDAWGI..DDANLFQLCR..WIAGQPG..GLRSMNKTLRYAWMIAASDE.RNQiTERDIQSAWSSL...
Q7VPI3_HAEDU/222-301                 .NRIGKKCQIKASKKGDIKAVAQAWGLdvQDKDLMTVLY..DIGGKAG..GLRALTQYLRLAGMTAKGQG.TGI.TLDLILTAQAEM...
B8FGN5_DESAA/239-315                 .SRIGRKLRLKKPSENDIKAICQAMGV..TEPMAQKYCV..EIAHKPE..AMRGMIETIQVAALFANGAG.QEL.GLKHIKAAWKD-...
Q1JYS0_DESAC/244-321                 .SRLGKRLRLNKPRKEDVVAVANSFSV..AGDQEQKALY..EISQKPG..ALRGVVKTLRLATMFAAGDN.EAV.QLEHIRAAWHDL...
F9Q9L3_9PAST/222-301                 .SRIGNNCGVKASTKGDIKAIAQAWGLdiADKDLMTVLY..DIGGKAG..GLRALTQYLRLAGMTAKGQG.TVI.TLDLILTAQAQM...
I2BC29_SHIBC/226-303                 .SRIAKRVAINKTKKADVTAIADAWHI..TGEKERDLLQ..QIAQKPG..ALRILSHSLRLAAMTAHGAG.HEV.SEGYIRKALRDL...
M4RAU7_BIBTR/222-301                 .SRISKHVSIQKCKKNDVVAIANAWGLdtNDQEMMSLLS..EIGAGGG..GLRSLTQTLRLAGIHAKGQD.SVI.TRDLVLAAQAEL...
B8GS43_THISH/242-319                 .SRQGKWVGIQKTTAKDIAALVAAWHI..DDSRVMDAAQ..EIGSRPG..GLRGLTKALRLASMFAAGEG.GAM.QREHLVQAWRDL...
H6SNB5_RHOPH/228-305                 .SRLGRRVTLGKPSRPDVSALASGFGI..TGREEADLLY..SLSQYPG..GLRCVVKVIRLALLTALGTD.TPA.SMKRLAAAWSEL...
Q8EDT8_SHEON/239-314                 .SRIAKKLSINKTKQADVRAIAKAWNL..QHDAEISLMI..QISEKPG..GLRLLSKTLKLAAMFAKGAA.I--.TEALLRTAFNEL...
M9WZ10_MANHA/230-308                 .SRSAKRTSIQKTKKEDTQAVAKAWGL.sENQEALKVMQ..AITETGG..GLRILTHTLRLAAMVAKDRM.IPL.TADLIQLARKDL...
F4HC55_GALAU/222-301                 .SRIGNHCGLKASTKGDIKAIASAWGLdiNDKDLMTVLF..DIGGKAG..GLRALTQYLRLAGMTAKGQG.TAM.TLDLILQAKQQM...
VPB_HAEIN/222-276                    .SRVAKNTSIQKTKKADTQAVAQAWGL.eTDEEALKVMQ..SITETGG..GLRILTQT------------.---.------------yac
A9ID00_BORPD/240-318                 .SRVAKRVRLSRAKDADVLTLLDAWRI..EDAEARQLCL..GIGRRPG..ALRGLSQTLRLASMFAATSG.AARpTAEHVRDAWQDL...
D3V956_XENNA/236-312                 .SRIAKKVAILKTKKDDVQAISAAWGL..-GQQERALVH..QLAERPG..ALRTVSHTLRLAAMFARGAN.ETL.SETHIRAAVKDL...
C9R6S1_AGGAD/222-301                 t-RLGHRCPIKASTKGDIKAITEAWGLdsGDKDLMTVLN..NIGTKAG..GLRALTQYLRLAAISAKAQG.AAI.TLDMILTAQKQM...
A8LKK5_DINSH/173-248                 r-RMVRPVVIRSVPKPDVLAVVRSRGI..TDPAICDALS..VMARRYG..GLADVQRTLAQAAKHASSDK.I--.AASDVKAAM---lyl
K2IXQ7_9GAMM/231-308                 .SRIAKKMGVHKAKQTDVKAIAAAWGI..SGNGELALLQ..QIAERPG..ALRILNQTLRLAAMLAGGSD.QSL.GEQHIRAAFKDL...
B9JYV7_AGRVS/264-340                 .SRIGKRLQRVQPYPEDLQTYIAAWSV..TDPACIKFLM..GIGMKGG..AFRQIEKTMRMARMVATGEG.TEV.SLKFIQAAWK--n..
A0A0D5LWN7_9RHIZ/257-333             r-RIGKRLNRRQPLRQDLEAFIDAWGV..TDPVAVKTLI..GMGLKGG..ALGQIDKTLKLAAMLAMAND.EPI.NARHVETAWK--n..
D5RM54_9PROT/238-316                 .SRLGMRIRKVRPTPGDIDAVLNAWKV..EDQQSRRVLH..VIGKRPG..ALRNVVKTLKLAHIRASGDGlTEI.SAPMLDWAWSR-l..
A0A090ILC2_9GAMM/240-317             .SRIAKKLVIHKVKKRDISDVADAWGL..RGKDERVLIE..QIASKPG..GLRTLFQTLRLAAMVAKGQN.QTI.NAQHIKYAFNDL...
E2CI33_9RHOB/261-338                 .SRFGKRISREKPYPEDINMFIKAWDI..EEPKAVAMLR..GIARKGG..ALRQIDKTMKLASMLAIGDG.SNLvSVEHIEQAWT--n..
B9JYF2_AGRVS/260-336                 .SRIGKRLQRVQPYPDDLQTYIAAWNV..TDPACIKFLM..GIGLKGG..AFRQIEKTMRMALMVALGAG.TEV.GLKDIQAAWK--n..
A0A0C5L7I7_9SPHN/235-313             .SRIAMDHHQDMPRPEDVSVYLDNAGI..ESDDVRQLLSrrALARDSG..GLREIQKVIELAHKLAIGED.TVV.ADQHFRDALQ--v..
A7INZ9_XANP2/232-310                 .SRVGARFVGASAKARDIEMLIAAWGV..TDEGVTKVLR..AIARKPG..ALRLVGKTIRAASMYAEAEE.IGQiSATHIRQAWSQL...
U3U117_9ENTR/1-63                    m-----------------AAIAAAWGI..TGESELTLVQ..AIAQKAG..ALRVLSHTLRQAWLMASGDA.QAQlGEKYIKAAFRE-v..
F4QGC4_9CAUL/236-315                 .SRIAKREIFRSPVGYDIKMMLEAWEV..TDSIEIAFLT..SIAMRPGggALRQMSRVLELATWMARGEK.AKR.DLRYIKEAADDL...
A9D2U3_HOEPD/271-347                 r-RIGKRVRLAKPRAEDINALLDAWAI..TDPDTRKVLT..GIGMKDG..ALGQIDKTLKLASMTAAANG.KPV.DAAAVRAAWS--n..
M4NG66_9GAMM/238-315                 .SRVGKRLRLQQSTEADIVALIKAWGI..TDTKCHPTLI..SIARGAG..ALRTLTKTLRLASMYAAAEG.RTV.CCEDVRAAASEL...
TARGB_BPMU/223-300                   .SRIAKRTAINKTKKADVKAIADAWQI..NGEKELELLQ..QIAQKPG..ALRILNHSLRLAAMTAHGKG.ERV.NEDYLRQAFREL...
#=GR TARGB_BPMU/223-300        SS    .-----TT--SS-SGGGTTHHHHSSSS..SSSHHHHHHH..TTSSS-S..-HHHHHHHHGGGT-TT-TTS.--S.SHHHHHHHHTSS...
A0A0F5EXB7_AVIPA/223-302             .SRSAKNESIQHCKKEDIVAIANAWQLdtTDKKLISLLA..ETGKRGG..GLRILTQVLRLAWFSANGDN.KRL.DYDYILAAKNEL...
#=GC SS_cons                         .-----TT--SS-SGGGTTHHHHSSSS..SSSHHHHHHH..TTSSS-S..-HHHHHHHHGGGT-TT-TTS.--S.SHHHHHHHHTSS...
#=GC seq_cons                        .SRluK+hslpcsppsDlpAlssAWGl..sDppthplLp..sIup+sG..uLRtls+TLRLAuMhApGps.psl.shchlpsAhpph...
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