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Database: Pfam
Entry: Phage-MuB_C
LinkDB: Phage-MuB_C
Original site: Phage-MuB_C 
#=GF ID   Phage-MuB_C
#=GF AC   PF09077.8
#=GF DE   Mu B transposition protein, C terminal 
#=GF AU   Sammut SJ
#=GF SE   pdb_1f6v
#=GF GA   25.00 25.00;
#=GF TC   34.70 33.50;
#=GF NC   23.10 21.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   11060014
#=GF RT   The solution structure of the C-terminal domain of the Mu B
#=GF RT   transposition protein. 
#=GF RA   Hung LH, Chaconas G, Shaw GS; 
#=GF RL   EMBO J. 2000;19:5625-5634.
#=GF DR   INTERPRO; IPR009084;
#=GF DR   SCOP; 1f6v; fa;
#=GF CC   The C terminal domain of the B transposition protein from
#=GF CC   Bacteriophage Mu comprises four alpha-helices arranged in a
#=GF CC   loosely packed bundle, where helix alpha1 runs parallel to
#=GF CC   alpha3, and anti-parallel to helices alpha2 and alpha4. The
#=GF CC   domain allows for non-specific binding of Mu to double-stranded
#=GF CC   DNA, allowing for integration into the bacterial genome, and
#=GF CC   mediates dimerisation of the protein [1].
#=GF SQ   24
#=GS D3V956_XENNA/236-312      AC D3V956.1
#=GS C9R6S1_AGGAD/222-301      AC C9R6S1.1
#=GS A8LKK5_DINSH/173-248      AC A8LKK5.1
#=GS D2TQ33_CITRI/223-300      AC D2TQ33.1
#=GS B9JYV7_AGRVS/264-340      AC B9JYV7.1
#=GS Q7VPI3_HAEDU/222-301      AC Q7VPI3.1
#=GS B8FGN5_DESAA/239-315      AC B8FGN5.1
#=GS A0A0D5LWN7_9RHIZ/257-333  AC A0A0D5LWN7.1
#=GS I2BC29_SHIBC/226-303      AC I2BC29.1
#=GS A0A090ILC2_9GAMM/240-317  AC A0A090ILC2.1
#=GS B9JYF2_AGRVS/260-336      AC B9JYF2.1
#=GS A0A0C5L7I7_9SPHN/235-313  AC A0A0C5L7I7.1
#=GS M4RAU7_BIBTR/222-301      AC M4RAU7.1
#=GS A7INZ9_XANP2/232-310      AC A7INZ9.1
#=GS U3U117_9ENTR/1-63         AC U3U117.1
#=GS B8GS43_THISH/242-319      AC B8GS43.1
#=GS F4HC55_GALAU/222-301      AC F4HC55.1
#=GS Q8EDT8_SHEON/239-314      AC Q8EDT8.1
#=GS M9WZ10_MANHA/230-308      AC M9WZ10.1
#=GS VPB_HAEIN/222-276         AC P96343.1
#=GS A9ID00_BORPD/240-318      AC A9ID00.1
#=GS A9D2U3_9RHIZ/271-347      AC A9D2U3.1
#=GS M4NG66_9GAMM/238-315      AC M4NG66.1
#=GS TARGB_BPMU/223-300        AC P03763.1
#=GS TARGB_BPMU/223-300        DR PDB; 1F6V A; 2-79;
D3V956_XENNA/236-312                 .SRIAKKVAILKTKKDDVQAISAAWGL..-GQQERALVH..QLAERPGALRTVSHTLRLAAMFARGANETL.SETHIRAAVKDL...
C9R6S1_AGGAD/222-301                 t-RLGHRCPIKASTKGDIKAITEAWGLdsGDKDLMTVLN..NIGTKAGGLRALTQYLRLAAISAKAQGAAI.TLDMILTAQKQM...
A8LKK5_DINSH/173-248                 r-RMVRPVVIRSVPKPDVLAVVRSRGI..TDPAICDALS..VMARRYGGLADVQRTLAQAAKHASSDKI--.AASDVKAAM---lyl
D2TQ33_CITRI/223-300                 .SRLARTKQLRKAKKADVLAIARAWGI..SGEAELAVMQ..AIAEKPGALRVLTHTLNQAWITASGEGAAL.TEKHINAAFKE-v..
B9JYV7_AGRVS/264-340                 .SRIGKRLQRVQPYPEDLQTYIAAWSV..TDPACIKFLM..GIGMKGGAFRQIEKTMRMARMVATGEGTEV.SLKFIQAAWK--n..
Q7VPI3_HAEDU/222-301                 .NRIGKKCQIKASKKGDIKAVAQAWGLdvQDKDLMTVLY..DIGGKAGGLRALTQYLRLAGMTAKGQGTGI.TLDLILTAQAEM...
B8FGN5_DESAA/239-315                 .SRIGRKLRLKKPSENDIKAICQAMGV..TEPMAQKYCV..EIAHKPEAMRGMIETIQVAALFANGAGQEL.GLKHIKAAWKD-...
A0A0D5LWN7_9RHIZ/257-333             r-RIGKRLNRRQPLRQDLEAFIDAWGV..TDPVAVKTLI..GMGLKGGALGQIDKTLKLAAMLAMANDEPI.NARHVETAWK--n..
I2BC29_SHIBC/226-303                 .SRIAKRVAINKTKKADVTAIADAWHI..TGEKERDLLQ..QIAQKPGALRILSHSLRLAAMTAHGAGHEV.SEGYIRKALRDL...
A0A090ILC2_9GAMM/240-317             .SRIAKKLVIHKVKKRDISDVADAWGL..RGKDERVLIE..QIASKPGGLRTLFQTLRLAAMVAKGQNQTI.NAQHIKYAFNDL...
B9JYF2_AGRVS/260-336                 .SRIGKRLQRVQPYPDDLQTYIAAWNV..TDPACIKFLM..GIGLKGGAFRQIEKTMRMALMVALGAGTEV.GLKDIQAAWK--n..
A0A0C5L7I7_9SPHN/235-313             .SRIAMDHHQDMPRPEDVSVYLDNAGI..ESDDVRQLLSrrALARDSGGLREIQKVIELAHKLAIGEDTVV.ADQHFRDALQ--v..
M4RAU7_BIBTR/222-301                 .SRISKHVSIQKCKKNDVVAIANAWGLdtNDQEMMSLLS..EIGAGGGGLRSLTQTLRLAGIHAKGQDSVI.TRDLVLAAQAEL...
A7INZ9_XANP2/232-310                 .SRVGARFVGASAKARDIEMLIAAWGV..TDEGVTKVLR..AIARKPGALRLVGKTIRAASMYAEAEEIGQiSATHIRQAWSQL...
U3U117_9ENTR/1-63                    m-----------------AAIAAAWGI..TGESELTLVQ..AIAQKAGALRVLSHTLRQAWLMASGDAQAQlGEKYIKAAFRE-v..
B8GS43_THISH/242-319                 .SRQGKWVGIQKTTAKDIAALVAAWHI..DDSRVMDAAQ..EIGSRPGGLRGLTKALRLASMFAAGEGGAM.QREHLVQAWRDL...
F4HC55_GALAU/222-301                 .SRIGNHCGLKASTKGDIKAIASAWGLdiNDKDLMTVLF..DIGGKAGGLRALTQYLRLAGMTAKGQGTAM.TLDLILQAKQQM...
Q8EDT8_SHEON/239-314                 .SRIAKKLSINKTKQADVRAIAKAWNL..QHDAEISLMI..QISEKPGGLRLLSKTLKLAAMFAKGAAI--.TEALLRTAFNEL...
M9WZ10_MANHA/230-308                 .SRSAKRTSIQKTKKEDTQAVAKAWGL.sENQEALKVMQ..AITETGGGLRILTHTLRLAAMVAKDRMIPL.TADLIQLARKDL...
VPB_HAEIN/222-276                    .SRVAKNTSIQKTKKADTQAVAQAWGL.eTDEEALKVMQ..SITETGGGLRILTQT---------------.------------yac
A9ID00_BORPD/240-318                 .SRVAKRVRLSRAKDADVLTLLDAWRI..EDAEARQLCL..GIGRRPGALRGLSQTLRLASMFAATSGAARpTAEHVRDAWQDL...
A9D2U3_9RHIZ/271-347                 r-RIGKRVRLAKPRAEDINALLDAWAI..TDPDTRKVLT..GIGMKDGALGQIDKTLKLASMTAAANGKPV.DAAAVRAAWS--n..
M4NG66_9GAMM/238-315                 .SRVGKRLRLQQSTEADIVALIKAWGI..TDTKCHPTLI..SIARGAGALRTLTKTLRLASMYAAAEGRTV.CCEDVRAAASEL...
TARGB_BPMU/223-300                   .SRIAKRTAINKTKKADVKAIADAWQI..NGEKELELLQ..QIAQKPGALRILNHSLRLAAMTAHGKGERV.NEDYLRQAFREL...
#=GR TARGB_BPMU/223-300        SS    .----TT--SS-SGGGTTHHHHSSSSS..HHHHHHHTTS..-S-HHHHHHHHGGGT-TT-TTS--SSHHHH.HHHTSSXXXXXX...
#=GC SS_cons                         .----TT--SS-SGGGTTHHHHSSSSS..HHHHHHHTTS..-S-HHHHHHHHGGGT-TT-TTS--SSHHHH.HHHTSSXXXXXX...
#=GC seq_cons                        .SRluK+htlppspcsDlpAlssAWGl..s-ppthpllp..sIupKsGuLRtLs+TLRLAuMhApGpupsl.stchlpsAhpp....
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