GenomeNet

Database: Pfam
Entry: Phage_F
LinkDB: Phage_F
Original site: Phage_F 
#=GF ID   Phage_F
#=GF AC   PF02305.15
#=GF DE   Capsid protein (F protein)
#=GF AU   Mian N, Bateman A, Haft D
#=GF SE   Pfam-B_10357 (release 5.2)
#=GF GA   25.00 25.00;
#=GF TC   70.10 26.40;
#=GF NC   19.90 21.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   8642594
#=GF RT   Atomic structure of the degraded procapsid particle of the
#=GF RT   bacteriophage G4: induced structural changes in the presence of
#=GF RT   calcium ions and functional implications. 
#=GF RA   McKenna R, Bowman BR, Ilag LL, Rossmann MG, Fane BA; 
#=GF RL   J Mol Biol 1996;256:736-750.
#=GF DR   INTERPRO; IPR003514;
#=GF DR   SCOP; 2bpa; fa;
#=GF CC   This is a family of proteins from single-stranded DNA
#=GF CC   bacteriophages. Protein F is the major capsid component, sixty
#=GF CC   copies of which are found in the virion.
#=GF SQ   47
#=GS R6P598_9CLOT/15-533       AC R6P598.1
#=GS A0A0E2J4F7_CHLPS/101-340  AC A0A0E2J4F7.1
#=GS CAPSD_BPPHS/2-189         AC P03641.2
#=GS CAPSD_BPPHS/2-189         DR PDB; 1AL0 F; 184-421;
#=GS CAPSD_BPPHS/2-189         DR PDB; 1CD3 F; 184-424;
#=GS CAPSD_BPPHS/2-189         DR PDB; 2BPA 1; 184-424;
#=GS A0A0K8JKK8_9FIRM/2-189    AC A0A0K8JKK8.1
#=GS A0A0E9NSK5_9ASCO/2-242    AC A0A0E9NSK5.1
#=GS D3IGK8_9BACT/248-538      AC D3IGK8.1
#=GS A0A0E2JGJ5_CHLPS/1-107    AC A0A0E2JGJ5.1
#=GS A0A085MQ25_9BILA/1-126    AC A0A085MQ25.1
#=GS U2QNE2_9FIRM/186-225      AC U2QNE2.1
#=GS A0A085MPS3_9BILA/1-65     AC A0A085MPS3.1
#=GS U7UB17_9BURK/2-189        AC U7UB17.1
#=GS A0A090FR40_9RHIZ/2-189    AC A0A090FR40.1
#=GS A0A0M3HGF0_ASCLU/2-188    AC A0A0M3HGF0.1
#=GS W1SBF0_9BACI/185-223      AC W1SBF0.1
#=GS W1SBF0_9BACI/2-189        AC W1SBF0.1
#=GS A0A0N4Z2Y8_PARTI/185-425  AC A0A0N4Z2Y8.1
#=GS A0A095ZKH6_9BACT/8-150    AC A0A095ZKH6.1
#=GS A0A0K8JKK8_9FIRM/185-425  AC A0A0K8JKK8.1
#=GS A0A0N5C5A0_STREA/2-188    AC A0A0N5C5A0.1
#=GS A0A095ZKH6_9BACT/259-551  AC A0A095ZKH6.1
#=GS U2KFM1_9STRE/1-137        AC U2KFM1.1
#=GS U2KFM1_9STRE/134-270      AC U2KFM1.1
#=GS A0A0M3HGF0_ASCLU/185-284  AC A0A0M3HGF0.1
#=GS CAPSD_BPPHM/13-529        AC Q9G059.1
#=GS D1PY00_9BACT/8-127        AC D1PY00.1
#=GS U2QND4_9FIRM/1-210        AC U2QND4.1
#=GS A0A0N4VWW7_HAEPC/1-90     AC A0A0N4VWW7.1
#=GS R6WQK7_9PORP/6-553        AC R6WQK7.1
#=GS D1PY00_9BACT/267-551      AC D1PY00.1
#=GS A0A0N4UTJ4_ENTVE/2-116    AC A0A0N4UTJ4.1
#=GS A0A0F7U3T1_9EURO/2-189    AC A0A0F7U3T1.1
#=GS U2QNE2_9FIRM/2-189        AC U2QNE2.1
#=GS A0A0A1PM56_9FUNG/1-48     AC A0A0A1PM56.1
#=GS A0A090FR40_9RHIZ/185-425  AC A0A090FR40.1
#=GS A0A0N4Z2Y8_PARTI/2-188    AC A0A0N4Z2Y8.1
#=GS U7UB17_9BURK/185-425      AC U7UB17.1
#=GS D3IGK8_9BACT/8-248        AC D3IGK8.1
#=GS U4L5C1_PYROM/1-48         AC U4L5C1.1
#=GS U4L5C1_PYROM/46-285       AC U4L5C1.1
#=GS CAPSD_BPCHP/16-593        AC P19192.2
#=GS CAPSD_SPV4/16-550         AC P11333.1
#=GS A0A0A1PM56_9FUNG/46-285   AC A0A0A1PM56.1
#=GS A0A0E2J4F7_CHLPS/2-104    AC A0A0E2J4F7.1
#=GS CAPSD_BPPHS/185-425       AC P03641.2
#=GS CAPSD_BPPHS/185-425       DR PDB; 1AL0 F; 184-421;
#=GS CAPSD_BPPHS/185-425       DR PDB; 1CD3 F; 184-424;
#=GS CAPSD_BPPHS/185-425       DR PDB; 2BPA 1; 184-424;
#=GS D1PVF0_9BACT/230-517      AC D1PVF0.1
#=GS A0A0F7U3T1_9EURO/185-291  AC A0A0F7U3T1.1
#=GS W1SUY7_9BACI/1-212        AC W1SUY7.1
R6P598_9CLOT/15-533                  ................................SRVPQIRKQRSIFPVNFSRKQTQVASYLVPIFYQEVLPGDTWQINLQSFIRLETQLTSPIDNLWVKTYFFFDPHRLQW.ENFPKQHGERKNP..........................NDTIDYLTPTITYPDG-IEYKSLADYLGRTrC..........GIK..........NTKMTSLGHRMYNRIYNAYFRSERLQDSLF--END.........TDEDDRPEN......YKL....VKIGKDRDYFTNCLPDLQLGEQVQIPL....GTRAPILga.....yksASNAEGTENV.....GTLNNIYDNQYQMQS....LYMTKSF.......VNNNQIVYSG....-QE............GLYADLSQAVSATISAMRLAIDTQEILERDNRNGTRYTEQLEGRYGCLNPDLLMYRPQYLGGTSSPLFTTPVVQTSGTgstGQATP.Q........GN..IAGFGTNA..-DRGEVV..RASFG.EFGAIMGLAVIKAIPEYQ.Q.GMGKCWNR-MERY.DYY.YPEF.NGLSDQAVTNSEIFYQ.........AN.EQDDEVF.GYIPRYDDYRTFINEICGELRSEYQYTQDIWHYGE..K..FETLP..KLNDDFIQDK.TNeiVKRTIAVqndeNG.DAEQFLC.DFQFTGSVTRGMPSHAIP--qt..............................................
A0A0E2J4F7_CHLPS/101-340             ...............................t------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTMFTLALVRFPPTAT.K.EIQYLNAKGALTYtDIAgDPVLyGNLPPREISMKDVF--.........RS.GDSSKKF.KIAEG-QWYRYAPSYVSPAY-----HLLEGFPF--..-..IQEPPsgDLQERVLIRH.HD..YDQCFQ-....SV.QLLQWNS.QVKFNVTVYRNLPTTRDSIM................................................
CAPSD_BPPHS/2-189                    ................................SNIQTG-AERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................------------TPLPTVNTTGYIDHAAFL.G..........TINp........dTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------tt..............................................
#=GR CAPSD_BPPHS/2-189         SS    ................................--GGCT-T--EEEE--EEEEEEE-TTEEEEEEEEEE-TT-EEEEEEEEEEEE--BSSS--C-EEEEEEEEEEEGGGTSTTHHHHHHHHGGGS..........................----------------EEE--SSSSSSGGG.T..........S---........TTSEEEHHHHHHHHHHHHHHTS-TTS-----SSGGG.........S-HHHHHS-......---....EE-B-SSSTTTS-C--TT--S------....B------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------TT..............................................
A0A0K8JKK8_9FIRM/2-189               ................................SNIQTG-AERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................------------TPLPTVNTTGYIDHAAFL.G..........TINp........dTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------tt..............................................
A0A0E9NSK5_9ASCO/2-242               ..............................tt------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTMFTLALVRFPPTAT.K.EIQYLNAKGALTYtDIAgDPVLyGNLPPREISMKDVF--.........RS.GDSSKKF.KIAEG-QWYRYAPSYVSPAY-----HLLEGFPF--..-..IQEPPsgDLQERVLIRH.HD..YDQCFQ-....SV.QLLQWNS.QVKFNVTVYRNLPTTRDSIM................................................
D3IGK8_9BACT/248-538                 ....dsfssvlqlsdptgsagfsadgnsakln------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-----MASPDVLNVSAIRSAFALDKLLSISMRAGKTYAEQIEAHFGVTVSEGRDGQVYYLGGFDSNVQVGDVTQTSGTt.nPNVSE.V........GNakLAGYLGKItgKGTGSGYgeIQFDAkEPGVLMCIYSVVPAMQYDcM.RLDPFVAK-QTRG.DYF.IPEF.ENLGMQPIVPA--FVS.........LN.RAKDNSY.GWQPRYSEYKTAFDINHGQF--ANGEPLSYWSIAR..ArgSDTLN..TFNVAALKINpHW..LDSVFAV....NY.N-GTEVT.DCMFGYAH------------fniekvsdmtedgm..................................
A0A0E2JGJ5_CHLPS/1-107               ...............................m-----------PHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................------------TPLPTVNTTGYIDHAAFL.G..........TIN..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------pdt.............................................
A0A085MQ25_9BILA/1-126               ................................------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..---YALST..-DSKRLF..TKSFV.EHGWILGLCSVTADLTYQ.Q.GLDKMWSR-FSKY.DFY.WPTF.AHLGEQPVLNKELYCQpdsvkdsatGA.AVNDLPF.GYQERYAEYRYKRSLITGRFRSNSSSPLDSWHLSQ..K..F----..----------.--..-------....--.-------.--------------------g...............................................
U2QNE2_9FIRM/186-225                 ...............................t------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGG--------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------................................................
A0A085MPS3_9BILA/1-65                ................................------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.----MWSR-FSRF.DFC.FPSL.AHLSEQPVYNREIYCQsdsv.igtgGV.PQNDLPF.GYQERYAEYRYKNSKIT------------------..-..-----..----------.--..-------....--.-------.--------------------................................................
U7UB17_9BURK/2-189                   ................................SNIQTG-AERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................------------TPLPTVNTTGYIDHAAFL.G..........TINp........dTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------tt..............................................
A0A090FR40_9RHIZ/2-189               ................................SNIQTG-AERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................------------TPLPTVNTAGYIDHAAFL.G..........TINp........dTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------tt..............................................
A0A0M3HGF0_ASCLU/2-188               ................................SNIQTG-AERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................------------TPLPTVNTAGYIDHAAFL.G..........TINp........dTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------t...............................................
W1SBF0_9BACI/185-223                 ...............................t------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............------TSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSF----------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------................................................
W1SBF0_9BACI/2-189                   ................................SNIQTG-AERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................------------TPLPTVNTAGYIDHAAFL.G..........TINp........dTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------tt..............................................
A0A0N4Z2Y8_PARTI/185-425             ..............................tt------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTMFTLALVRFPPTAT.K.EIQYLNAKGALTYtDIAgDPVLyGNLPPREISMKDVF--.........RS.GDSSKKF.KIAEG-QWYRYAPSYVSPAY-----HLLEGFPF--..-..IQEPPsgDLQERVLIRH.HD..YDQCFQ-....SV.QLLQWNS.QLVL----------------tsvtpassapvlqtpk................................
A0A095ZKH6_9BACT/8-150               .........................ikasran-------RPRNAFDLSQKHLFTAHAGMLLPVMTMDLIPHDHVSIQATDFMRCLPMNSAAFMSMRSVYEFFFVPYSQLW.HPFDQFITGMNDYrs.....................slfSEKYNNKVP---LAVPSFQRKLLSDYF---.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------vapqssdlffkqkdifgyttatn.........................
A0A0K8JKK8_9FIRM/185-425             ..............................tt------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTMFTLALVRFPPTAT.K.EIQYLNAKGALTYtDIAgDPVLyGNLPPREISMKDVF--.........RS.GDSSKKF.KIAEG-QWYRYAPSYVSPAY-----HLLEGFPF--..-..IQEPPsgDLQERVLIRH.HD..YDQCFQ-....SV.QLLQWNS.QVKFNVTVYRNLPTTRDSIM................................................
A0A0N5C5A0_STREA/2-188               ................................SNIQTG-AERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................------------TPLPTVNTTGYIDHAAFL.G..........TINp........dTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------t...............................................
A0A095ZKH6_9BACT/259-551             ....qsiwsfvntpgysdsltidsdtnavnlh------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............------SDSGLLTVSSIRNAFALDKLLRITQRAGKTYAEQIKAHFGYEVSEGRDGRVNYLGGFDSNIQVGDVTQMSGT...-TASP.EsgvsikhgGY..LGRVTGKA..QGSGSGH..IEFDAhEHGVLMCIYSLVPDMQYD.AtRLDPFVTK-LSRG.DFF.IPEF.EDLGMQPLQTRFIS--.........DS.GKQTEKFkGWQPRYSEYKTALDINHGQF--ANGQPLSYWSVGRgrS..GETLD..TFNIASLKINpKW..LDSIFAVn.ynGT.QLTDCVFgGCQFNIQKVSDMS-------esgepri.........................................
U2KFM1_9STRE/1-137                   ................................---------------------------------------------------LSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................------------TPLPTVNTTGYIDHAAFL.G..........TINp........dTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------t...............................................
U2KFM1_9STRE/134-270                 ..............................tt------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTMFTLALVRFPPTAT.K.EIQYLNAKGALTYtDIAgDPVL.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------y...............................................
A0A0M3HGF0_ASCLU/185-284             ..............................tt------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTM-------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------................................................
CAPSD_BPPHM/13-529                   ................................AQIPSVHTTRSKFNRSFGTKDTFKFDDLTPIFIDEILPGDTINMNTKTFIRLATQVVPVMDRMMLDFYFFFVPCRLVW.DNWEKFNGAQDNP..........................SDSTDYLIPTITAPAGGFENMSIYDHFGIP.T..........QVA..........NLEINALPFRAYNLIYNDWFRDQNLIGKIAVPKGD.........--GPDNHAD......YQL....LKAAKPHDYFTSALPWPQKGMAVEMPI....GNSAPITyv......pnAGNGPYPHFNwvqtpGGPGNNGALSQVTFGgqkaISAAGND.......P------IGY....DPQ...........gTLIADLSSATAATINQLRQAMMMQSLLELDARGGTRYVEILKSHFNVISLDFRLQRPEYLSGGTIDLQQNPVPQTSSS...TTDSP.Q........GN..LAAFSTAS.eFGNKIGF..SKSFV.EHGYVLGFIRARGQVTYQ.Q.GLHKMWSR-QTRW.DFF.WPKF.QELGEQAILNKEIYAQ.........GN.ATDSEIF.GYQERYGEYRFRPSEIKGQFRSNFAESLDVWHLAE..Y..FTVKP..SLNKTFIESN.TP..IERSLVVt..rPD.Y-PDLIG.DFWFDYTHVRPMVTYGVPA-t...............................................
D1PY00_9BACT/8-127                   ........................ikatrpnr--------NRNAFDLSQRHLFTAHAGMLLPVLNLDLIPHDHVEINAQDFMRTLPMNTAAFASMRGVYEFFFVPYHQLW.AQFDQFITGMNDF..........................HSSANKSIQGGTSPL---------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------qvpyfnvdsvfnsl..................................
U2QND4_9FIRM/1-210                   ................................------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............------------------------------------YHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTMFTLALVRFPPTAT.K.EIQYLNAKGALTYtDIAgDPVLyGNLPPREISMKDVF--.........RS.GDSSKKF.KIAEG-QWYRYAPSYVSPAY-----HLLEGFPF--..-..IQEPPsgDLQERVLIRH.HD..YDQCFQ-....SV.QLLQWNS.QVKFNVTVYRNLPTTRDSIM................................................
A0A0N4VWW7_HAEPC/1-90                ...............................m-----------PHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................T-----------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------plptvnt.........................................
R6WQK7_9PORP/6-553                   ............................nsir----MKRPRRNAFNLSYESKLTLNMGELVPIMCMPVVSGDKFRVKTESLVRLAPLVAPMMHRVNVFTHYFFVPNRLVW.NEWEDFITKGVDGedmpm................fpkiqINQDSHLVSSASLIKEYFGDSSLWDYLGLP.TlsacgnksydV-Vngv...kvpsGFQVSALPFRAYQLIYNEYYRDQNLTEPIDFTLGSg......ttVGGDQLMAL......MSL....RRRAWEKDYFTSALPWLQRGPEVTVPVq.gaGGSMDVV.........yERQSDSQKWV....dSSGREFENGHAYDIT....MARANDPns..almVAVNGGTNNR....APEld.......pngTLKVNVD-EMGININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGRMPISVSEVLQTSST...DETSP.Q........AN..MAGHGISA..-GINNGF..KHYFE.EHGYIIGIMSITPRSGYQ.Q.GVPRDFTK-FDNM.DFY.FPEF.AHLSEQEIKNQELFVS.........EDaAYNNGTF.GYTPRYAEYKYHPSEAHGDFRG----NLSFWHLNR..I..FEDKP..NLNTTFVE-C.KP..SNRVFAT....SEtEDDKFWV.QMYQDVKALRLMPKYGTPML................................................
D1PY00_9BACT/267-551                 ....iaprdyvksdgsnftrvnfgvdtdsseg------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............----------DFSVSSLRAAFAVDKLLSVTMRAGKTFQDQMRAHYGVEIPDSRDGRVNYLGGFDSDMQVSDVTQTSGTt.aTEYKPeA........GY..LGRVAGKG..TGSGRGR..IVFDAkEHGVLMCIYSLVPQIQYDcT.RLDPMVDK-LDRF.DYF.TPEF.ENLGMQPLNSSYISSF........cTT.DPKNPVL.GYQPRYSEYKTALDVNHGQF--AQSDALSSWSVSRfrR..WTTFP..QLE-------.--..-------....--.-------.--------------------iadfkidpgclnsifpvdyngteandcvyggcnfnivkvsdmsvdgmp
A0A0N4UTJ4_ENTVE/2-116               ................................SNIQTG-AERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................------------TPLPTVNTTGYIDHAAFL.G..........TIN..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------pd..............................................
A0A0F7U3T1_9EURO/2-189               ................................SNIQTG-AERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................------------TPLPTVNTTGYIDHAAFL.G..........TINp........dTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------tt..............................................
U2QNE2_9FIRM/2-189                   ................................SNIQTG-AERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................------------TPLPTVNTTGYIDHAAFL.G..........TINp........dTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------tt..............................................
A0A0A1PM56_9FUNG/1-48                ................................------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........------------------------MPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------t...............................................
A0A090FR40_9RHIZ/185-425             ..............................tt------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTMFTLALVRFPPTAT.K.EIQYLNAKGALTYtDIAgDPVLyGNLPPREISMKDVF--.........RS.GDSSKKF.KIAEG-QWYRYAPSYVSPAY-----HLLEGFPF--..-..IQEPPsgDLQERVLIRH.HD..YDQCFQ-....SV.QLLQWNS.QVKFNVTVYRNLPTTRDSIM................................................
A0A0N4Z2Y8_PARTI/2-188               ................................SNIQTG-AERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYgEQWIKFMKDGVNA..........................------------TPLPTVNTTGYIDHAAFL.G..........TINp........dTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------t...............................................
U7UB17_9BURK/185-425                 ..............................tt------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTMFTLALVRFPPTAT.K.EIQYLNAKGALTYtDIAgDPVLyGNLPPREISMKDVF--.........RS.GDSSKKF.KIAEG-QWYRYAPSYVSPAY-----HLLEGFPF--..-..IQEPPsgDLQERVLIRH.HD..YDQCFQ-....SV.QLLQWNS.QVKFNVTVYRNLPTTRDSIM................................................
D3IGK8_9BACT/8-248                   ........................qikpsran-------RPRSAFDLSQKHLYTAPAGALLPVLSVDLMFHDHIRIQAQDFMRTMPMNSAAFISMRGVYEFFFVPYSQLW.HPYDQFITSMNDYrssvvssaagdkaldsvpnvkladmyKFVRERTDKDIFGYPHSNNSCRLMDLLGYG.K..........PITssktpvpllyTGNVNLFRLLAYNKIYSDYYRNTTYEG-VDVYSFNidhkkgtfvPTADEFKKY......LNL....HYRNAPLDFYTNLRPTP----------....-------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------lftigsd.........................................
U4L5C1_PYROM/1-48                    ................................------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........------------------------MPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------t...............................................
U4L5C1_PYROM/46-285                  ...............................t------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTMFTLALVRFPPTAT.K.EIQYLNAKGALTYtDIAgDPVLyGNLPPREISMKDVF--.........RS.GDSSKKF.KIAEG-QWYRYAPSYVSPAY-----HLLEGFPF--..-..IQEPPsgDLQERVLIRH.HD..YDQCFQ-....SV.QLLQWNS.QVKFNVTVYRNLPTTRDSIM................................................
CAPSD_BPCHP/16-593                   ................................SEVPTATIRRSSFDRSHGYKTTFDMDYLVPFFVDEVLPGDTFSLSETHLCRLTTLVQPIMDNIQLTTQFFFVPNRLLW.DNWESFITGGDEPvaw....................tstNPANEYFVPQVTSPDGGYAENSIYDYFGLP.T..........KVA..........NYRHQVLPLRAYNLIFNEYYRDENLQESLPVWTGDadp..kvdpTTGEESQEDdavpyvYKL....MRRNKRYDYFTSALPGLQKGPSVGIGItggdSGRLPVHglairsylddSSDDQFSFGVsyvnaSQKWFTADGRLTSGMgsvpVGTTGNFpi..dnvVYPSYFGTTVaqtgSPSssstppfvkgdfPVYVDLAASSSVTINSLRNAITLQQWFEKSARYGSRYVESVQGHFGVHLGDYRAQRPIYLGGSKSYVSVNPVVQNSST...DSVSP.Q........GN..LSAYALST..-DTKHLF..TKSFV.EHGFVIGLLSATADLTYQ.Q.GLERQWSR-FSRY.DYY.WPTF.AHLGEQPVYNKEIYCQsdtv.mdpsGS.AVNDVPF.GYQERYAEYRYKPSKVTGLFRSNATGTLDSWHLSQ..N..FANLP..TLNETFIQSN.TP..IDRALAV....PD.Q-PDFIC.DFYFNYRCIRPMPVYSVPGL................................................
CAPSD_SPV4/16-550                    ................................SMFKGNHIPRSKIHIPHKTIRAFNVGEIIPIYQTPVYPGEHIKMDLTSLYRPSTFIVPPMDDLIVDTYAFAVPWRIVW.KDLEKFFGENSDS.........................wDVKNAPPVPDIVAPSGGWDYGTLADHFGIT.P..........KVP..........GIRVKSLRFRAYAKIINDWFRDQNLSSECALTLDSsn....sqgSNGSNQVTD......IQLggkpYIANKYHDYFTSCLPAPQKGAPTTLNV....GGMAPVT..........TKFRDVPNLS.....GTPLIFRDNKGRTIK....TGQLGIGpvdagflVAQNTAQAANgeraIPS............NLWADLSNATGISISDLRLAITYQHYKEMDARGGTRYVEFTLNHFGVHTADARLQRSEFLGGHSQSLLVQSVPQTSST..vEKMTP.Q........GN..LAAFSETM..IQNNYLV..NKTFT.EHSYIIVLAVVRYKHTYQ.Q.GIEADWFRGQDKF.DMY.DPLL.ANISEQPVKNREIMVQ.........GN.SQDNEIF.GFQEAWADLRFKPNSVAGVMRSSHPQSLDYWHFAD..H..YAQLP..KLSSEWLKEDyKN..VDRTLALk..aSD.NTPQLRV.DFMFNTIAEKPMPLYSTPGL................................................
A0A0A1PM56_9FUNG/46-285              ...............................t------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTMFTLALVRFPPTAT.K.EIQYLNAKGALTYtDIAgDPVLyGNLPPREISMKDVF--.........RS.GDSSKKF.KIAEG-QWYRYAPSYVSPAY-----HLLEGFPF--..-..IQEPPsgDLQERVLIRH.HD..YDQCFQ-....SV.QLLQWNS.QVKFNVTVYRNLPTTRDSIM................................................
A0A0E2J4F7_CHLPS/2-104               ..........................kdgvna------------------------------------------------------------------------------.-------------..........................------------TPLPTVNTAGYIDHAAFL.G..........TINp........dTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNE.........LNQDDARYG......---....FRCCHLKNIWTAPLP-PETELSRQMTT....S------..........----------.....---------------....-------.......----------....---............------------------------------------------------------------------------------...-----.-........--..--------..-------..-----.------------------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------tt..............................................
CAPSD_BPPHS/185-425                  ..............................tt------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTMFTLALVRFPPTAT.K.EIQYLNAKGALTYtDIAgDPVLyGNLPPREISMKDVF--.........RS.GDSSKKF.KIAEG-QWYRYAPSYVSPAY-----HLLEGFPF--..-..IQEPPsgDLQERVLIRH.HD..YDQCFQ-....SV.QLLQWNS.QVKFNVTVYRNLPTTRDSIM................................................
#=GR CAPSD_BPPHS/185-425       SS    ..............................--------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------BTTB--HHHHHHHHHHHHHHHHHHHS-SSHHHHHHHTT----TTTT-T--EEEEEEEEEE--EEEE--STT...-----.-........-C..SS-EEEE-.EEEEEEEE..EEEE--SSEEEEEEEEEE----BS.S.B--HHHHSSS--HHHHS--HHHHHTS--EEEEGGGTB--.........TT.--TT-EE.EE-TT-GGGT-------CCC-----TT-SSS-S--..-..B-S---SSTTTTTB--T.CC..CGGGBS-....--.TT-SEEE.EEEEEEEEEE----CCCCC-................................................
D1PVF0_9BACT/230-517                 hlnfdrdqyadqsksnftqlnfpvdvdnnlgy------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-----------FSVSSLRSAFAVDKLLSVTMRAGKTFQDQMRAHYGVEIPDSRDGRVNYLGGFDSDLQVSDVTQTSGTt.aTEYKPeA........GY..LGRIAGKG..TGSGRGR..IVFDAkEHGVLMCIYSLVPQIQYDcT.RLDPMVDK-LDRF.DFF.TPEF.ENLGMQPLNSSYISSF........cTP.DPKNPVL.GYQPRYSEYKTALDINHGQF--AQNDALSSWSVSRfrR..WTTFP..QLE-------.--..-------....--.-------.--------------------iadfkidpgclnsvfpvefngtestdcvfggcnfnivkvsdmsvdgmp
A0A0F7U3T1_9EURO/185-291             ..............................tt------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............-------STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTMFTLALV-------.-.-------------.---.----.----------------.........--.-------.-----------------------------------..-..-----..----------.--..-------....--.-------.--------------------l...............................................
W1SUY7_9BACI/1-212                   ................................------------------------------------------------------------------------------.-------------..........................------------------------------.-..........---..........-----------------------------------.........---------......---....---------------------------....-------..........----------.....---------------....-------.......----------....---............----------------------------------QRFHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT...-----.-........-S..LGQFSGRV.qQTYKHSV..PRFFVpEHGTMFTLALVRFPPTAT.K.EIQYLNAKGALTYtDIAgDPVLyGNLPPREISMKDVF--.........RS.GDSSKKF.KIAEG-QWYRYAPSYVSPAY-----HLLEGFPF--..-..IQEPPsgDLQERVLIRH.HD..YDQCFQ-....SV.QLLQWNS.QVKFNVTVYRNLPTTRDSIM................................................
#=GC SS_cons                         ..............................----GGCT-T--EEEE--EEEEEEE-TTEEEEEEEEEE-TT-EEEEEEEEEEEE--BSSS--C-EEEEEEEEEEEGGGTSTTHHHHHHHHGGGS..........................----------------EEE--SSSSSSGGG.T..........S--.........TTSEEEHHHHHHHHHHHHHHTS-TTS-----SSGGG.........S-HHHHHS-......---....EE-B-SSSTTTS-C--TT--S------....B------..........----------.....---------------....-------.......----------....---............-------BTTB--HHHHHHHHHHHHHHHHHHHS-SSHHHHHHHTT----TTTT-T--EEEEEEEEEE--EEEE--STT...-----.-........-C..SS-EEEE-.EEEEEEEE..EEEE--SSEEEEEEEEEE----BS.S.B--HHHHSSS--HHHHS--HHHHHTS--EEEEGGGTB--.........TT.--TT-EE.EE-TT-GGGT-------CCC-----TT-SSS-S--..-..B-S---SSTTTTTB--T.CC..CGGGBS-....--.TT-SEEE.EEEEEEEEEE----CCCCC-TT..............................................
#=GC seq_cons                        .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
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