GenomeNet

Database: Pfam
Entry: Phage_connector
LinkDB: Phage_connector
Original site: Phage_connector 
#=GF ID   Phage_connector
#=GF AC   PF05352.10
#=GF DE   Phage Connector (GP10)
#=GF AU   Finn RD
#=GF SE   Pfam-B_13828 (release 7.8)
#=GF GA   25.00 25.00;
#=GF TC   36.90 36.90;
#=GF NC   20.10 19.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   11526317
#=GF RT   Structure determination of the head-tail connector of
#=GF RT   bacteriophage phi29. 
#=GF RA   Simpson AA, Leiman PG, Tao Y, He Y, Badasso MO, Jardine PJ,
#=GF RA   Anderson DL, Rossmann MG; 
#=GF RL   Acta Crystallogr D Biol Crystallogr 2001;57:1260-1269.
#=GF RN   [2]
#=GF RM   11130079
#=GF RT   Structure of the bacteriophage phi29 DNA packaging motor. 
#=GF RA   Simpson AA, Tao Y, Leiman PG, Badasso MO, He Y, Jardine PJ,
#=GF RA   Olson NH, Morais MC, Grimes S, Anderson DL, Baker TS, Rossmann
#=GF RA   MG; 
#=GF RL   Nature 2000;408:745-750.
#=GF DR   INTERPRO; IPR008016;
#=GF DR   SCOP; 1jnb; fa;
#=GF CC   The head-tail connector of bacteriophage 29 is composed of 12 
#=GF CC   36  kDa subunits with 12 fold symmetry. It is the central
#=GF CC   component  of a rotary motor that packages the genomic dsDNA
#=GF CC   into pre-formed  proheads. This motor consists of the head-tail
#=GF CC   connector, surrounded  by a 29-encoded, 174-base, RNA and a
#=GF CC   viral ATPase protein [1,2].
#=GF SQ   7
#=GS R5FZI8_9ACTN/28-289         AC R5FZI8.1
#=GS B3VMP6_BPPH2/8-285          AC B3VMP6.1
#=GS A0A0G0CNQ9_9BACT/3-282      AC A0A0G0CNQ9.1
#=GS A0A0L0BZH8_LUCCU/897-1174   AC A0A0L0BZH8.1
#=GS A0A0L0CP37_LUCCU/1058-1312  AC A0A0L0CP37.1
#=GS A0A077ZM51_TRITR/843-1104   AC A0A077ZM51.1
#=GS PORTL_BP44A/6-229           AC Q859K6.1
R5FZI8_9ACTN/28-289                    ............................................siltstqln---------------..--Q.IYQCYFMNIAATVFE.WEN..LPDTVDADFLEFALIQDGKAAFCNDRDRGFLGLRAADQ.SVLNLYGYPVKINGYGINFNQEYN------------ADEF...VLIKNNPM.WTPTLFYINYFV.DKIAKTQQI.IDINVNAQKTPVILKGTANQKLALANLFAKYDGSQGYIFIDKD..NDfNDC..FGS.VNTGAPLVAKDL...YTLLESYKAEFLSFLGVNNVQNEKAERLITDEVNANNQFVSINLETMLYERKNACKQINERF.G.LNISVKPRV---qse....
B3VMP6_BPPH2/8-285                     .....................................................TYRSINEIQRQKRNR..WFI.HYLNYLQSLAYQLFE.WEN..LPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALS.GQRDVYNQATVFRAASPVYQKEFKLYNYR---DMKEEDMG...VVIYNNDM.AFPTTPTLELFA.AELAELKEI.ISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEA..LD.SDS..IEV.FKTDAPYVVDKL...NAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELY.G.LNVKVKFRYDIV.......
A0A0G0CNQ9_9BACT/3-282                 ................................................raski-----RKSEENQQNKvdWLRsQLMNIWQNKATSIFQ.WEGegITPFVS-QQIERRLYEDGSVVLFKDDDGVVKVYRWAMD.GGLNGYGLPVSWRVFGMNGTSE----QFS-----RSEKDS...VLIWNDLN.RMATASYIKFIIdYKLINIEDT.IDTQLNAHKIPFVFTGNKSQLLTFENVFKKVSGGVPVIYMNEAspLN.NAE..FQL.FPTNVTFVADQL...KQLRHDYEDDMMDYLGLCYVGIEKKERLITSEAEGTEDSSNSSFASRYGQRKRACEEWNKIYpD.MKLKVKLNE---gll....
A0A0L0BZH8_LUCCU/897-1174              ..............................................nyalsng-------IMAIYTNR..WRN.HYRDYLFLLTTQLFE.WEN..LPPTVDPRFIEVELHTRGFVSFFKDPTLSYIAVGGAMS.GQLDHYNLPTYFQATAPNYNKSFRLYNYS---DMNEKNMG...VLICNNDL.RYPTTGTIDMFA.EELAEIKAI.TRVNLNAQKTPVLIAVDDLNKLSMLNIYNQYEGNAPAIVTSKE..AN.LES..IKV.FKTDAPYVVDKI...NTQRMAIWNEFMTFLGIQNTNNEKRERMVEDEVNSNNGQVENSTNIMLKSREEAVKKINELY.G.LDIKVKLRKE--rt.....
A0A0L0CP37_LUCCU/1058-1312             ...............................................eesmil---------------..---.-------QLYCSRYT.WTC..NDDKIPTDFIEYMLFYNGMLAFFHHDDFGWLLLPCSV-.MSIDVYGRPNALNVTLPDASGSITIQDFV----LLRDNPA...LNVPH---.-----QLVQYYA.RMIGDTART.LDVYVRAMKKPLLIDADFKSKQTAKEFSKSLLANENVITLDRK..YL.KDT..AQLnITQDTSHNAEDLkgiQMYKASLYNECIAKLGITTPTIVKQAQVNQDEINKNDAMTNVILNGTLECRQRASKLIFEKSqGaINLSCQLCE---qid....
A0A077ZM51_TRITR/843-1104              .................................qlkdaqcyvkqiraeyarti---------------..---.----------DQFFDmVEG..LPVEADARWLALKLFELGSVAFFYDEDAGEYACMQYLSmGVFDGYGNPTKITVYSP-------WTHYN---KVLEKGQF...VIIWDNYL.RVNNYQSFIGLA.YRLTRLDGT.IDVNCTAQKTPVVVACNENSQLSMKNMIAKVDADEPYIPVSKK..FN.TDD..IQA.IQLNAPFVALDL...LEAQQRLYNQGNSMLGITSVIAQKKERMITSEVESSNADALANRRSRTMARDYATEQIRDIF.G.INVR--------wffdd..
PORTL_BP44A/6-229                      vnntyfnqapnfssnfnfqfqkrltkediyfivpdylipddclqihklydncm---------------..---.---------------.---..--------------------------------------.---------------------------------------SgnfVVMQNKPIqYNSDIEIIEHYT.DELAEVALSrFSLIMQAKF--SKIFKSEINDESINQLVSEIYNGAPFVKMSPM..FN.ADDdiIDL.TSNSVIPALTEM...KREYQNKISELSNYLGINSLAVDKESGVSDEEAKSNRGFTTSNSNIYLKGRE-PITFLSKRY.G.LDIK--------pyyddet
#=GC seq_cons                          .................................................sphh.............................hhsphFp.WEs..lssplsspalEhtLap.G.luFapD.shuhhsh.tuhp.u.hshYs.Pshhpshu.shptp....pa.......pcs.u...VlIhNs.h.hhsshthlphas.tcLuclpth.lclphsApKpPllltsscpspLohpplhsphpustPhIhhsct..hs.sDs..hpl.hpssssaVsccL...pp.ppshhsEhhsaLGIssssh-KcERhls-ElpuNss.spsshsshLtsRcpAscpIs-ha.G.lsl+sp.p.....h.....
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