GenomeNet

Database: Pfam
Entry: Phytoreo_Pns
LinkDB: Phytoreo_Pns
Original site: Phytoreo_Pns 
#=GF ID   Phytoreo_Pns
#=GF AC   PF05451.7
#=GF DE   Phytoreovirus nonstructural protein Pns10/11
#=GF AU   Moxon SJ
#=GF SE   Pfam-B_15695 (release 8.0)
#=GF GA   20.00 20.00;
#=GF TC   20.40 241.30;
#=GF NC   19.50 19.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   10949951
#=GF RT   Sequence analysis of Pns11, a nonstructural protein of rice gall
#=GF RT   dwarf virus, and its expression and detection in infected rice
#=GF RT   plants and vector insects. 
#=GF RA   Moriyasu Y, Ishikawa K, Kikuchi A, Imanishi S, Tomita S, Akutsu
#=GF RA   K, Omura T; 
#=GF RL   Virus Genes 2000;20:237-241.
#=GF DR   INTERPRO; IPR008777;
#=GF CC   This family consists of Phytoreovirus nonstructural proteins
#=GF CC   Pns10 and Pns11. Genome segment S11 of rice gall dwarf virus
#=GF CC   (RGDV), a member of Phytoreovirus encodes a putative protein of
#=GF CC   40 kDa that exhibits approximately 37% homology at the amino
#=GF CC   acid level to the nonstructural proteins Pns10 of rice dwarf and
#=GF CC   wound tumour viruses, which are other members of Phytoreovirus
#=GF CC   [1].
#=GF SQ   12
#=GS A2RQI6_9REOV/1-337  AC A2RQI6.1
#=GS VSR_RGDV/1-352      AC Q9JGV3.1
#=GS VSR_RDVF/1-348      AC Q85434.1
#=GS E2E3H0_9REOV/1-357  AC E2E3H0.1
#=GS E2E2F2_9REOV/1-357  AC E2E2F2.1
#=GS C1JAW7_9REOV/1-356  AC C1JAW7.1
#=GS A5HIX9_RGDV/1-351   AC A5HIX9.1
#=GS VSR_RDVO/1-348      AC P16594.1
#=GS VSR_WTV/1-343       AC P13094.1
#=GS B5G4T6_RGDV/1-351   AC B5G4T6.1
#=GS VSR_RDVA/1-348      AC Q85447.1
#=GS Q6Q4H6_RGDV/1-351   AC Q6Q4H6.1
A2RQI6_9REOV/1-337             MDVNTEGFVSLNVKTVVEEKGHEIVMKYDALKRLNL....RD--FESNISTAAMNTVNSFSYKREAWIASDVKERDI-GANTMKAAIFVPGSVLANGMMPKDLVPYGHLVTVLIPVPDIFMLVDNESCLV-NTLRVPISAFICVRILNTLRIEVIGSEYDSYYYCSTSRYGKNLIKMSPSIPASLRDVRVSLNELAVVAFRECHDYVVRIV-KLLTQPPQGFIPKSHVLRINMCYWYGNVRDswlkqPCQQRPA-..NTFTYDDRTNVLHRRTMFSASDSFSYSILWRGWD-RYKEFLSQDQVSKFLRYIAPGGPMNTYIMTYPSTFEEGVVYLQYRWWtP--.-----..----------------yveqsscqt..
VSR_RGDV/1-352                 MDADTERVIKLHVDLIKNHQVYGVLTKFDAIRKLRL....TADGNSNNASRAALSKLQELASSGEAYVVSDLASRTVETSDIVKAVIFTPHSVISRGKLIKDIIPYGVMAAAIVYVPETITILDSIQFYGENHVSRPYSMVVLIDACKEIGTEVVGSDYDTYYYCQAPEYGKNLLKMGTMRPNLPAIIRLSMGDLCYGAAISSHTMAAKYLPSYLTRLPNGFTPKSHLLKIYLVLEMEQFKE.....IVQEMMAK..GGHEYNDSKNLLSRTTMFNPDHAYTHIIFWRGWSSTYKEFLSQDQLTTFTGRPGVAGDLGVWTFSIPSMFNDGRVYIRYKFF.PLH.AKKRE..HNSGKGISLYPDLESL...........
VSR_RDVF/1-348                 MEVDTATFVRLHHELLCAHEGPSIISKFDAIKKVKLgtlaNQSGGANNITEAFFDKLRNFERKSEAYLASDLAEREL-TRDTHKAIVFVTKSVLLGGKSLKDLLPYGVIVCAFIFIPETASVLDNVRVMIGNQ-KRPLTVALIKYMAKSLNCDLVGDSYDTFYYCNSSAYGKNLISVSENDFSNPQRALLSVGDLCYQAARSIHVAAANYI-RIFDRMPPGFQPSKHLFRIIGVLDMETLKT.....MVTSNIARepGMFSHDNVKDVLHRTGVFSPNHHFSAVILWRGWASTYAYMFNQEQLNMLSGTSGLAGDFGKYKLTYGSTFDEGVIHVQSQFVtPEA.VRKR-..-------NIYPDLSAL...........
E2E3H0_9REOV/1-357             MDVESSRVLNLHSGFLEKLAGHEIITKVDAIKRFKI....EGLQGGNNVSVAALEKLRDYANKGQGYVISDIQERTT-GDGVYKSLIFMRRSILSSGKSIKDVLPYGMMVGVLVFLPETAGILDDIPMVISTS-KKPMTICIIHQLAKNLHLDLDSDSYDSFYYCGSSAYGKNLLRINDHLPSIPPKIRLSVGDLAYYAASSLHTAATTYI-RLFDNLPAGFSPRSHLYKVVGILDMPTFKD.....VVKTKTKScdEQFYYDDVKNVMIRDGVFSADHQYTAVILWRGWASTYMEMLSQEQQSQLQSQNAFAGDLGIHKFTVASKFDEGQVYVQYKFItPGMlARGAAqrSGSHQGGNLYPSLN--lesl.......
E2E2F2_9REOV/1-357             MDVESSRVLNLHSGFLEKLAGHEIITKVDAIKRFKI....EGLQGGNNVSVAALEKLRDYANKGEGYVISDIQERTT-GDGVYKSLIFMRRSILSSGKSIKDVLPYGMMVGVLVFLPETAGILDDIPMVISTS-KKPMTICIIHQLAKNLHLDLDSDSYDSFYYCGSSAYGKNLLRINDHLPSIPPKIRLSVGDLAYYAASSLHTAATTYI-RLFDNLPAGFSPRSHLYKVVGILDMPTFKD.....VVKTKTKScdEQFYYDDVKNVMIRDGVFSADHQYTAVILWRGWASTYMEMLSQEQQSQLQSQNAFAGDLGIHKFTVASKFDEGQVYVQYKFItPGMlARGAAqrSGSHQGGNLYPSLN--ldsl.......
C1JAW7_9REOV/1-356             MDVESSRVLNLHSGFLEKLAGHEIITKVDAIKRFKI....EGLQGGNNVSVAALEKLRDYANKGEGYVISDIQERTT-GDGVYKSLIFMRRSILSSGKSIKDVLPYGMMVGVLVFLPETAGILDDIPMVISTS-KKPMTICIIHQLAKNLHLDLDSDSYDSFYYCGSSAYGKNLLRINDHLPSIPPKIRLSVGDLAYYAASSLHTAATTYI-RLFDNLPAGFSPRSHLYKVVGILDMPTFKD.....VVKTKTKScdEQFYYDDVKNVMIRDGVFSADHQYTAVILWRGWASTYMEMLSQEQQSQLQSQNAFAGDLGIHKFTVASKFDEGQVYVQYKFItPGMlARGAAqrSGSHQGGNLYPSLS--lds........
A5HIX9_RGDV/1-351              MDADTERVIKLHVDLIKNHQIYGVLTKFDAIRKLRL....TADGNTNNASRAALSKLQELASSGEAYVVSDLACRTVETSDIVKAVIFTPHSVISRGKLIKDIIPYGVMAAAIVYVPETITILDSIQFYGENHVSRPYSMVVLIDACKEIGTEVVGSDYDTYYYCQAPEYGKNLLKMGTMRPNLPAIVRLSMGDLCYGAAVSSHTMAAKYL-KLFNRLPNGFTPKSHLLKIYLVLEMDQFKE.....IVQEMMAK..GGHEYNDSKNLLSRTTMFNPDHAYTHIIFWRGWSSTYKEFLSQDQLTTFTGRPGVAGDLGVWTFSIPSMFNDGRVYIRYKFF.PLH.AKKRE..HNSGKGISLYPDLESL...........
VSR_RDVO/1-348                 MEVDTATFVRLHHELLCAHEGPSIISKFDAIKKVKLgtlaNQSGGANNITEAFLAKLRNFERKSEAYLASDLAEREL-TRDTHKAIVFVTKSVLLGGKSLKDLLPYGVIVCAFIFIPETASVLDNVPVMIGNQ-KRPLTVALIKYIAKSLNCDLVGDSYDTFYYCNSSAYGKNLISVSDNDFSNPQRALLSVGDLCYQAARSLHVAAANYI-RIFDRMPPGFQPSKHLFRIIGVLDMETLKT.....MVTSNIARepGMFCHDNVKDVLHRIGVYSPNHHFSAVILWRGWASTYAYMFNQEQLNMLSGTSGLAGDFGKYKLTYGSTFDEGVIHVQYQFVtPEV.VRKR-..-------NIYPDLSAL...........
VSR_WTV/1-343                  MDASVDRITNLHFEILAKAGGHEIHQKYEAIRKLNL....TGDSSKSNISVSARSAILKWADAKQGYIASQLDDRDY-GDLIAKAVIFVPMSVITGGKNPKDLIPYGVVAAVLIFVPETLTLLDEIVINLMHD-KKPLSSILLTKILRDMKIDVCGSNFDSFYYCPISRYNRHIIKLAGALPQMPTSVRLSVNDLARVAISEVHNQLISDK-QMFFKLPTGFSPKVHCLKVLCTTEMEIFQK.....WVRTFMSDrpNEFIYSDQFNILSRTTYFSSDDPFSFFTLWRGW-STYKEILSQDQASSFLEAIGSGKPLRSSIATFPSMFDEGAIYIRYEWItPKD.SA---..----------------nskkagssaps
B5G4T6_RGDV/1-351              MDADTERVIKLHVDLIKNHQIYGVLTKFDAIRKLRL....TVDGNTNNASRAALSKLQELASSGEAYVVSDLASRTVETSDIVKAVIFTPHSVISHGKLIKDIIPYGVMAAAIVYVPETITILDSIQFYGENHVSRPYSMVVLIDACKEIGTEVVGSDYDTYYYCQAPEYGKNLLKMGTMRPNLPAIVRLSMGDLCYGAAVSSHTMAAKYL-KLFNRLPNGFTPKSHLLKIYLVLEMDQFKE.....IVQEMMAK..GGHEYNDSKNLLSRTAMFNPDHAYTHIIFWRGWSSTYKEFLSQDQLTTFTGRPGVAGDLGVWTFSIPLVFNDGRVYIRYKFF.PLH.AKKRE..HNSGKGISLYPDLESL...........
VSR_RDVA/1-348                 MEVDTATFVRLHHELLCAHEGPSIISKFDAIKKVKLgtlaNQSGGVNNITEAFLAKLRNFERKSEAYLASDLAEREL-TRDTHKAIVFVTKSVLLGGKSLKDLLPYGVIVCAFIFIPETASVLDNVPVMIGNQ-KRPLTVALIKYIAKSLNCDLVGDSYDTFYYCNSSAYGKNLISVSDNDFSNPQRALLSVGDLCYQAARSLHVAAANYI-RIFDRMPPGFQPSKHLFRIIGVLDMETLKT.....MVTSNIARepGMFCHDNVKDVLHRIGVYSPNHHFSAVILWKGWASTYAYMFNQEQLNMLSGTSGLAGDFGKYKLTYGSTFDEGVIHVQYQFVtPEV.VRKR-..-------NIYPDLSAL...........
Q6Q4H6_RGDV/1-351              MDADTERVIKLHVDLIKNHQIYGVLTKFDATRKLRL....TADGNTNNASRAALSKLQELASSGEAYVVSDLASRTVETSDIVKAVIFTPHSVISRGKLIKDIIPYGVMAAAIVYVPETITILDSIQFYGENHVSRPYSMVVLIDACKEIGTEVVGSDYDTYYYCQAPEYGRNLLKMGTMRPNLPAIVRLSMGDLCYGAAVSSHTMAAKYL-KLFNRLPNGFTPKSHLLEIYLVLEMDQFKE.....IVQEMMAK..GGHEYNDSKNLLSRTTMFNPDHAYTHIIFWRGWSSTYKEFLSQDQLTTFTGRPGVAGDLGVWTFSIPSMFNDGRVYIRYKFF.PLH.AKKRE..HNSGKGISLYPDLESL...........
#=GC seq_cons                  MDs-TpRllpLHs-llppcpGapIloKaDAI+Kl+L....sssussNNlSpAALsKLpcaAspuEAYlsSDLs-Rsl.ssslhKAlIFss+SVlosGK.lKDllPYGVhsusllalPETholLDsI.hhltNp.++PhohsllhphsKslph-llGssYDoaYYCsuStYGKNLl+husthPshPsplRLSlGDLsYhAApShHshAspYl.+lFs+LPsGFoP+SHLh+IhhlL-M-pFK-.....hVpphhAc..stFpYsDsKNlLpRsshFSsDHtaotlILWRGWuSTYtEhLSQ-QlophpupsGhAGDLGhaphThsShF-EGtVYlpY+FhTPhh.u+tt..........slYPsLp.............
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