GenomeNet

Database: Pfam
Entry: Phytoreo_Pns
LinkDB: Phytoreo_Pns
Original site: Phytoreo_Pns 
#=GF ID   Phytoreo_Pns
#=GF AC   PF05451.8
#=GF DE   Phytoreovirus nonstructural protein Pns10/11
#=GF AU   Moxon SJ
#=GF SE   Pfam-B_15695 (release 8.0)
#=GF GA   20.00 20.00;
#=GF TC   22.10 654.50;
#=GF NC   19.50 19.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   10949951
#=GF RT   Sequence analysis of Pns11, a nonstructural protein of rice gall
#=GF RT   dwarf virus, and its expression and detection in infected rice
#=GF RT   plants and vector insects. 
#=GF RA   Moriyasu Y, Ishikawa K, Kikuchi A, Imanishi S, Tomita S, Akutsu
#=GF RA   K, Omura T; 
#=GF RL   Virus Genes 2000;20:237-241.
#=GF DR   INTERPRO; IPR008777;
#=GF CC   This family consists of Phytoreovirus nonstructural proteins
#=GF CC   Pns10 and Pns11. Genome segment S11 of rice gall dwarf virus
#=GF CC   (RGDV), a member of Phytoreovirus encodes a putative protein of
#=GF CC   40 kDa that exhibits approximately 37% homology at the amino
#=GF CC   acid level to the nonstructural proteins Pns10 of rice dwarf and
#=GF CC   wound tumour viruses, which are other members of Phytoreovirus
#=GF CC   [1].
#=GF SQ   2
#=GS VSR_RGDV/1-352  AC Q9JGV3.1
#=GS VSR_RDVF/1-348  AC Q85434.1
VSR_RGDV/1-352             MDADTERVIKLHVDLIKNHQVYGVLTKFDAIRKLRL....TADGNSNNASRAALSKLQELASSGEAYVVSDLASRTVETSDIVKAVIFTPHSVISRGKLIKDIIPYGVMAAAIVYVPETITILDSIQFYGENHVSRPYSMVVLIDACKEIGTEVVGSDYDTYYYCQAPEYGKNLLKMGTMRPNLPAIIRLSMGDLCYGAAISSHTMAAKYLPSYLTRLPNGFTPKSHLLKIYLVLEMEQFKEIVQEMMAK..GGHEYNDSKNLLSRTTMFNPDHAYTHIIFWRGWSSTYKEFLSQDQLTTFTGRPGVAGDLGVWTFSIPSMFNDGRVYIRYKFF.PLHAKKREHNSGKGISLYPDLESL
VSR_RDVF/1-348             MEVDTATFVRLHHELLCAHEGPSIISKFDAIKKVKLgtlaNQSGGANNITEAFFDKLRNFERKSEAYLASDLAEREL-TRDTHKAIVFVTKSVLLGGKSLKDLLPYGVIVCAFIFIPETASVLDNVRVMIGNQ-KRPLTVALIKYMAKSLNCDLVGDSYDTFYYCNSSAYGKNLISVSENDFSNPQRALLSVGDLCYQAARSIHVAAANYI-RIFDRMPPGFQPSKHLFRIIGVLDMETLKTMVTSNIARepGMFSHDNVKDVLHRTGVFSPNHHFSAVILWRGWASTYAYMFNQEQLNMLSGTSGLAGDFGKYKLTYGSTFDEGVIHVQSQFVtPEAVRKR--------NIYPDLSAL
#=GC seq_cons              M-sDTtphl+LHh-LlpsHps.ulloKFDAI+Kl+L....stsGsuNNhocAhhsKLpphtppuEAYlsSDLApRpl.TpDhhKAllFss+SVl.tGK.lKDllPYGVhssAhlalPETholLDslphhhtNp.pRPhohsllh.hsKplss-lVGssYDTaYYCpustYGKNLlphup.c.s.PthhhLShGDLCYtAAhS.HshAApYl.phhsRhPsGFpPppHLh+IhhVL-MEphKphVpp.hA+..GhapasssKslLpRTshFsPsHtaotlIhWRGWuSTYt.hhsQ-QLshhoGpsGlAGDhGhaphohsShFs-Ghlalp.pFh.P.ts+KR........slYPDLpuL
//
DBGET integrated database retrieval system