GenomeNet

Database: Pfam
Entry: Podovirus_Gp16
LinkDB: Podovirus_Gp16
Original site: Podovirus_Gp16 
#=GF ID   Podovirus_Gp16
#=GF AC   PF05894.11
#=GF DE   Podovirus DNA encapsidation protein (Gp16)
#=GF AU   Moxon SJ
#=GF SE   Pfam-B_9825 (release 8.0)
#=GF GA   20.90 20.90;
#=GF TC   26.90 28.20;
#=GF NC   18.80 18.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   3879485
#=GF RT   The complete sequence of Bacillus phage phi 29 gene 16: a
#=GF RT   protein required for the genome encapsidation reaction. 
#=GF RA   Garvey KJ, Saedi MS, Ito J; 
#=GF RL   Gene 1985;40:311-316.
#=GF DR   INTERPRO; IPR008784;
#=GF CC   This family consists of several DNA encapsidation protein (Gp16)
#=GF CC   sequences from the phi-29-like viruses. Gene product 16
#=GF CC   catalyses the in vivo and in vitro genome-encapsidation reaction
#=GF CC   [1]. 
#=GF SQ   6
#=GS A0A0G0ERS5_9BACT/5-341      AC A0A0G0ERS5.1
#=GS R5FXH7_9ACTN/60-382         AC R5FXH7.1
#=GS A0A0L0CRP4_LUCCU/1029-1329  AC A0A0L0CRP4.1
#=GS A0A0H1SCU7_9MOLU/15-202     AC A0A0H1SCU7.1
#=GS A0A0L0BZH8_LUCCU/2224-2548  AC A0A0L0BZH8.1
#=GS PKG16_BPPH2/1-331           AC P11014.1
#=GS PKG16_BPPH2/1-331           DR PDB; 5HD9 A; 4-197;
A0A0G0ERS5_9BACT/5-341                 ..............l-TKDIWYDINRLLSFKALISVVVGMRGGGKTYGAKKRCIIDFKEKGQQFVWLRRYDSELF.....EA.KkT.FFNairndpDLNRK..YP..DMKLHII..GNKVYIDDEVAGYFIALTLAHKFK.SSDFPLVVNIVYDEFI.PDDSsRL..GYLRSEVTALYNLIETIQRQRDTTRVIMIANAISFGNPYFIAWRVKPFRQE....FLH...LKSmSIVIQMYYNEAFANYKQDTRFGKLT..AGTEYSQFAIMNKFADDNDVFIGNRT..EYAKYRCTVKYEGETYGFWIDFNEGLI.FASSKVDPSCPHSYTLSQKDHDINYLLVKNVKGTY-VNEIVEGYKLGILRFESIMIKSRVLEM------ltlf.........................................
R5FXH7_9ACTN/60-382                    ............imk-----YYSLRKCLSYNRYLNILIGGRGIGKTYQLKKYVIEQYIKSKKQFVWLRRYKTEIK.....EA.T.DgFFT......KHKNN..YP..DHKFEIK..GKTAYIDGEQAGRFIALTNADILKgSDDFSAVTTIVYDEFI.IDNK.SSfrRYLPNELRIFTDLQETIFRTRQDGKVFMLANALSMVNPYCLAFGIKFNYTP....LFKndlIYA.EML-STTNELAFAKAT--TPQNKLAtkYLPEYNDYANNESFLNDDYSQIERKP..KDSIQLFNIKTNNNIIYFFFASSSQAL.YACQSGDPKTNP---------------------------------------------------------ftvnkiaesnrphagaeikkiksfavagrlffenlqiksevekli
A0A0L0CRP4_LUCCU/1029-1329             .deemflsfvvserg--------------------------------------------AGEQFVYLRRSQTELE.....SAlP.T.LFD......PFQREgfFL..EHNFSVR..GEFLYIDNKCCGRGIAISTAYKLK.SVGFPNVKYILFDEFI.SE--.NG..QYIKEELHKFLSCIETIGRMRD-IYVIALANQSTIYNPYYVYFQIKPASKQtpktRFR...-QK.SILVYQFISTEYRQAKQETKFGKLI..QGTKYGSFMLENEAIQDNYQFVDKMDgyKKKPFVNMLISGENIVAYDCETKDGTIvYFQI--REAIKDIPSYNFDKQLEKDRIIDNVRNNPYVRRISLYVNRGMIAFRDIRVKNIIE--------dfif.........................................
A0A0H1SCU7_9MOLU/15-202                rlqpilnspaqeisl----------------------IFGRGSGKSYGTKYWILEGIEKQGKEFIWLRRQFDSIRtgsleSW.K.R.VIN......SYCQQnqVPekDIELVWDaiTRGVKYQGIMKCFMVELFSSYKAR.ENYTQTISHIVFDEAIiNPKT.GE..DYLPDEQEKITELLGSAWRDRDHD---------------------------....---...---.-------------------------..--------------------------..---------------------------.---------------------------------------------------------------------pkpkliyianpyerfrpfladflplirkqrsk.............
A0A0L0BZH8_LUCCU/2224-2548             ...............MDKSLYYNPNELLSKNRIMNFVIGARGIGKTYGFKKYVINRFLKTGKQFIYLRRYKSELA.....KV.A.N.FFN......SLKHE..FE..GVDFKVK..GRMFFINDKLAGWAIPLSSWQAEK.STDYPDVETILFDEFI.REKD.NS..RYLPDEVKALLNFMDTVIRIREGSRLIGMSNSVSIVNPYFLYFSLVPNISK....RFN...LYE.SIAVEIPPSADFVEERKKTSFGKLI..EGTDYAKMAMDNQFIGDNYTFVEKRS..KESDFVFAVKYGNKTMGIWVDGY--NM.YVSEAYDPYTKHLFVIRKEDMTDNSKLVRSSRHEYRMGKLLSAFEKGMLRFDNLECRSVD---------hkqtv........................................
PKG16_BPPH2/1-331                      ...............MDKSLFYNPQKMLSYDRILNFVIGARGIGKSYAMKVYPINRFIKYGEQFIYVRRYKPELA.....KV.S.N.YFN......DVAQE..FP..DHELVVK..GRRFYIDGKLAGWAIPLSVWQSEK.SNAYPNVSTIVFDEFI.REKD.NS..NYIPNEVSALLNLMDTVFRNRERVRCICLSNAVSVVNPYFLFFNLVPDVNK....RFN...VYD.DALIEIPDSLDFSSERRKTRFGRLI..DGTEYGEMSLDNQFIGDSQVFIEKRS..KDSKFVFSIVYNGFTLGVWVDVNQGLM.YIDTAHDPSTKNVYTLTTDDLNENMMLITNYKNNYHLRKLASAFMNGYLRFDNQVIRNIAYELFRKMRI.............................................
#=GR PKG16_BPPH2/1-331           SS    ...............XXX--S--THHHHHT--SEEEE-S--SSHHHHHHHHHHHHHHHHH--EEEEEESSGGGGT.....TG.G.G.GGG......GTGGG..-T..TS-EEEE..TTEEEETTEEEEEEEEGGGHHHHT.TS--SSEEEEEEET-S.--SS.--..---TTHHHHHHHHHHHH--SSTT-EEEEE-S---SSSHHHHHHT----TT-....SEE...E-S.SEEEE---TT---XXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............................................
#=GC SS_cons                           ...............XXX--S--THHHHHT--SEEEE-S--SSHHHHHHHHHHHHHHHHH--EEEEEESSGGGGT.....TG.G.G.GGG......GTGGG..-T..TS-EEEE..TTEEEETTEEEEEEEEGGGHHHHT.TS--SSEEEEEEET-S.--SS.--..---TTHHHHHHHHHHHH--SSTT-EEEEE-S---SSSHHHHHHT----TT-....SEE...E-S.SEEEE---TT---XXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............................................
#=GC seq_cons                          ..............h.....aYs.pchLShpthhshlIGuRGhGKoYuhKhasIppahKpGcQFlaLRRYcoELt.....cs.s.s.aFN......shppc..aP..Dhchpl+..G+thYIDschAGahIsLosupphK.SssaPsVssIVFDEFI.p-cs.su..pYLPsElctlhsLh-TlhRpR-ps+lIhluNulShsNPYalhFplhPshpp....hFp...lhp.shllph..shsFspt+pcTpFGKLh..tGT-YuphuhpNpFlsDs.sFl-++s..Kcu.alhslhhssphhuhah-sppthh.YhspthDPtspp..shp.cc...p.hllps.+tp..htcl..hh..GhltFcs..h+sh...........p.h.........................................
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