GenomeNet

Database: Pfam
Entry: Podovirus_Gp16
LinkDB: Podovirus_Gp16
Original site: Podovirus_Gp16 
#=GF ID   Podovirus_Gp16
#=GF AC   PF05894.10
#=GF DE   Podovirus DNA encapsidation protein (Gp16)
#=GF AU   Moxon SJ
#=GF SE   Pfam-B_9825 (release 8.0)
#=GF GA   20.90 20.90;
#=GF TC   26.90 104.60;
#=GF NC   18.80 18.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   3879485
#=GF RT   The complete sequence of Bacillus phage phi 29 gene 16: a
#=GF RT   protein required for the genome encapsidation reaction. 
#=GF RA   Garvey KJ, Saedi MS, Ito J; 
#=GF RL   Gene 1985;40:311-316.
#=GF DR   INTERPRO; IPR008784;
#=GF CC   This family consists of several DNA encapsidation protein (Gp16)
#=GF CC   sequences from the phi-29-like viruses. Gene product 16
#=GF CC   catalyses the in vivo and in vitro genome-encapsidation reaction
#=GF CC   [1]. 
#=GF SQ   5
#=GS A0A0G0ERS5_9BACT/5-341      AC A0A0G0ERS5.1
#=GS B3VMQ2_BPPH2/1-331          AC B3VMQ2.1
#=GS R5FXH7_9ACTN/60-382         AC R5FXH7.1
#=GS A0A0L0CRP4_LUCCU/1029-1329  AC A0A0L0CRP4.1
#=GS A0A0L0BZH8_LUCCU/2224-2548  AC A0A0L0BZH8.1
A0A0G0ERS5_9BACT/5-341                 .............l-TKDIWYDINRLLSFKALISVVVGMRGGGKTYGAKKRCIIDFKEKGQQFVWLRRYDSELFEA.KkT.FFNairndpDLNRK..YPDMKLHIIGNKVYIDDEVAGYFIALTLAHKFK.SSDFPLVVNIVYDEFIPDDSsRL..GYLRSEVTALYNLIETIQRQRDTTRVIMIANAISFGNPYFIAWRVKPFRQE....FLH...LKSmSIVIQMYYNEAFANYKQDTRFGKLT..AGTEYSQFAIMNKFADDNDVFIGNRT..EYAKYRCTVKYEGETYGFWIDFNEGLI.FASSKVDPSCPHSYTLSQKDHDINYLLVKNVKGTY-VNEIVEGYKLGILRFESIMIKSRVLEM------ltlf.........................................
B3VMQ2_BPPH2/1-331                     ..............MDKSLFYNPQKMLSYDRILNFVIGARGIGKSYAMKVYPINRFIKYGEQFIYVRRYKPELAKV.S.N.YFN......DVAQE..FPDHELVVKGRRFYIDGKLAGWAIPLSVWQSEK.SNAYPNVSTIVFDEFIREKD.NS..NYIPNEVSALLNLMDTVFRNRERVRCICLSNAVSVVNPYFLFFNLVPDVNK....RFN...VYD.DALIEIPDSLDFSSERRKTRFGRLI..DGTEYGEMSLDNQFIGDSQVFIEKRS..KDSKFVFSIVYNGFTLGVWVDVNQGLM.YIDTAHDPSTKNVYTLTTDDLNENMMLITNYKNNYHLRKLASAFMNGYLRFDNQVIRNIAYELFRKMRI.............................................
R5FXH7_9ACTN/60-382                    ...........imk-----YYSLRKCLSYNRYLNILIGGRGIGKTYQLKKYVIEQYIKSKKQFVWLRRYKTEIKEA.T.DgFFT......KHKNN..YPDHKFEIKGKTAYIDGEQAGRFIALTNADILKgSDDFSAVTTIVYDEFIIDNK.SSfrRYLPNELRIFTDLQETIFRTRQDGKVFMLANALSMVNPYCLAFGIKFNYTP....LFKndlIYA.EML-STTNELAFAKAT--TPQNKLAtkYLPEYNDYANNESFLNDDYSQIERKP..KDSIQLFNIKTNNNIIYFFFASSSQAL.YACQSGDPKTNP---------------------------------------------------------ftvnkiaesnrphagaeikkiksfavagrlffenlqiksevekli
A0A0L0CRP4_LUCCU/1029-1329             deemflsfvvserg--------------------------------------------AGEQFVYLRRSQTELESAlP.T.LFD......PFQREgfFLEHNFSVRGEFLYIDNKCCGRGIAISTAYKLK.SVGFPNVKYILFDEFISE--.NG..QYIKEELHKFLSCIETIGRMRD-IYVIALANQSTIYNPYYVYFQIKPASKQtpktRFR...-QK.SILVYQFISTEYRQAKQETKFGKLI..QGTKYGSFMLENEAIQDNYQFVDKMDgyKKKPFVNMLISGENIVAYDCETKDGTIvYFQI--REAIKDIPSYNFDKQLEKDRIIDNVRNNPYVRRISLYVNRGMIAFRDIRVKNIIE--------dfif.........................................
A0A0L0BZH8_LUCCU/2224-2548             ..............MDKSLYYNPNELLSKNRIMNFVIGARGIGKTYGFKKYVINRFLKTGKQFIYLRRYKSELAKV.A.N.FFN......SLKHE..FEGVDFKVKGRMFFINDKLAGWAIPLSSWQAEK.STDYPDVETILFDEFIREKD.NS..RYLPDEVKALLNFMDTVIRIREGSRLIGMSNSVSIVNPYFLYFSLVPNISK....RFN...LYE.SIAVEIPPSADFVEERKKTSFGKLI..EGTDYAKMAMDNQFIGDNYTFVEKRS..KESDFVFAVKYGNKTMGIWVDGY--NM.YVSEAYDPYTKHLFVIRKEDMTDNSKLVRSSRHEYRMGKLLSAFEKGMLRFDNLECRSVD---------hkqtv........................................
#=GC seq_cons                          .............h.sKslaYs.p+hLSasRllNhVIGuRGIGKTYuhKKYsIpcFlKsGcQFVYLRRYKoELtcA.s.s.FFN......clp+E..FPDHcFcVKG+phYIDsKlAGauIALSsApphK.SsDFPsVsTIVFDEFIpEcc.NS..pYLPsEV+ALLNLhETIhRpR-ssRVIsLANAlSlVNPYFLaFslKPshsc....RF+...lYc.SILlphssSt-Fupt+pcT+FGKLI..pGTEYucaAl-NpFIsDNYsFIEKRo..K-ScFVFslKYsspTlGaWlDsspGsl.YsspuhDPuTKclaolsp-Dhs-N.hLlcNs+ssYhlp+lspuappGhLRF-slhl+sls.........hplh.........................................
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