GenomeNet

Database: Pfam
Entry: Podovirus_Gp16
LinkDB: Podovirus_Gp16
Original site: Podovirus_Gp16 
#=GF ID   Podovirus_Gp16
#=GF AC   PF05894.7
#=GF DE   Podovirus DNA encapsidation protein (Gp16)
#=GF AU   Moxon SJ
#=GF SE   Pfam-B_9825 (release 8.0)
#=GF GA   20.90 20.90;
#=GF TC   21.40 27.10;
#=GF NC   20.80 20.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   3879485
#=GF RT   The complete sequence of Bacillus phage phi 29 gene 16: a
#=GF RT   protein required for the genome encapsidation reaction. 
#=GF RA   Garvey KJ, Saedi MS, Ito J; 
#=GF RL   Gene 1985;40:311-316.
#=GF DR   INTERPRO; IPR008784;
#=GF CC   This family consists of several DNA encapsidation protein (Gp16)
#=GF CC   sequences from the phi-29-like viruses. Gene product 16
#=GF CC   catalyses the in vivo and in vitro genome-encapsidation reaction
#=GF CC   [1]. 
#=GF SQ   17
#=GS B3VMQ2_BPPH2/1-331   AC B3VMQ2.1
#=GS F0PIJ2_9VIRU/62-380  AC F0PIJ2.1
#=GS C7VFW0_ENTFL/65-383  AC C7VFW0.1
#=GS VG16_BPPH2/1-331     AC P11014.1
#=GS VG16_BPPZA/1-331     AC P07541.1
#=GS Q9FZV9_BPGA1/1-335   AC Q9FZV9.1
#=GS G9J3H3_9CAUD/1-339   AC G9J3H3.1
#=GS Q38007_BPCP1/1-360   AC Q38007.1
#=GS C7CWH2_ENTFL/65-383  AC C7CWH2.1
#=GS E0GIB7_ENTFL/62-380  AC E0GIB7.1
#=GS B1ABI1_9CAUD/2-358   AC B1ABI1.1
#=GS A6XAE1_9CAUD/1-331   AC A6XAE1.1
#=GS C2DGS3_ENTFL/62-380  AC C2DGS3.1
#=GS VG16_BPB03/1-320     AC Q37897.1
#=GS E5G064_9VIRU/1-311   AC E5G064.1
#=GS B7SSN7_BPNF/1-331    AC B7SSN7.1
#=GS Q9FZR6_9CAUD/43-390  AC Q9FZR6.1
B3VMQ2_BPPH2/1-331              ................................................MDKSL.FYNPQK.MLSY.DRILNFVI..GARGIGKSYAMKVYPINRFIKYGEQFIYVRRYKPELAKV.SN-YF.ND..V.AQE..FPDHELV.VKG............................RRFYID..GKLA..GWAIPLSVWQSEKSNAYPNVSTIVFDEFIR..E.KD...NSNYIPNE....VSALLNLMDTVFRNR...ERVRCICLSN...AVSVVNPYFL...FFNLVP.DVNKR.FN..VYDDAL.I.EIPD.SLDFSSER.RKTRFGRLIDGTE..YGEMSLDNQFIGD......SQVFIEK...R.....SKDSKFVFSIVYN.GFTLG.V.........WV..DVNQGLMYIDTAHDPSTKNV-YTLTTDDL..NENMMLITNYKNNYHLRKLASAFMNGYLRFDNQVIRNIAYELFRKMRI...........................................................................................................................
F0PIJ2_9VIRU/62-380             qefkklptlmeaefqflflrryitqaksasrnlvladfyqpfldklpe-----.------.----.--------..---------------------------------------.-----.--..-.---..------E.VKKqyevfveyqgss....eepreillvfrnKELKKD..KKCIklGYLGAVSMAEKFRGPGLPKVKVILLDEFQ-..S.KK...NWDYLPNE....PVELEDIYESVGRLRcgtGDIKVIALGN...SGTILNPYFD...YYGYDEfTEVKT.VK..REGEVL.F.YHLP.NKAKRSEQ.S----KNLFKGSA..YGKYSLDNDFADN......QLFNVIRlkeA.....KAPRKCLYNIFFG.ETYIG.V.........WR..TG-DYKILISRVSDPDKLDI------VDR..TPIEEQV---LDQQVYRVLSDKLQNKQLYFDSPELRLIA---------ekhlrkyi...................................................................................................................
C7VFW0_ENTFL/65-383             qefkklptlmeaefqflflrryitqaksasrnlvladfyqpfldklpe-----.------.----.--------..---------------------------------------.-----.--..-.---..------E.VKKqyevfveyqgss....eepreillvfrnKELKKD..KKCIklGYLGAVSMAEKFRGPGLPKVKVILLDEFQ-..S.KK...NWDYLPNE....PVELEDIYESVGRLRcgtGDIKVIALGN...SGTILNPYFD...YYGYDEfTEVKT.VK..REGEVL.F.YHLP.NKAKRSEQ.S----KNLFKGSA..YGKYSLDNDFADN......QLFNVIRlkeA.....KAPRKCLYNIFFG.ETYIG.V.........WR..TG-DYKILISRVSDPDKLDI------VDR..TPIEEQV---LDQQVYRVLSDKLQNKQLYFDSPELRLIA---------ekhlrkyi...................................................................................................................
VG16_BPPH2/1-331                ................................................MDKSL.FYNPQK.MLSY.DRILNFVI..GARGIGKSYAMKVYPINRFIKYGEQFIYVRRYKPELAKV.SN-YF.ND..V.AQE..FPDHELV.VKG............................RRFYID..GKLA..GWAIPLSVWQSEKSNAYPNVSTIVFDEFIR..E.KD...NSNYIPNE....VSALLNLMDTVFRNR...ERVRCICLSN...AVSVVNPYFL...FFNLVP.DVNKR.FN..VYDDAL.I.EIPD.SLDFSSER.RKTRFGRLIDGTE..YGEMSLDNQFIGD......SQVFIEK...R.....SKDSKFVFSIVYN.GFTLG.V.........WV..DVNQGLMYIDTAHDPSTKNV-YTLTTDDL..NENMMLITNYKNNYHLRKLASAFMNGYLRFDNQVIRNIAYELFRKMRI...........................................................................................................................
VG16_BPPZA/1-331                ................................................MDKSL.FYNPQK.MLSY.DRILNFVI..GARGIGKSYAMKVYPINRFIKYGEQFIYVRRYKPELAKV.SN-YF.ND..V.AQE..FPDHELV.VKG............................RRFYID..GKLA..GWAIPLSVWQSEKSNAYPNVSTIVFDEFIR..E.KD...NSNYIPNE....VSALLNLMDTVFRNR...ERVRCICLSN...AVSVVNPYFL...FFNLVP.DVNKR.FN..VYDDAL.I.EIPD.SLDFSSER.RKTRFGRLIDGTE..YGEMSLDNQFIGD......SHVFIEK...R.....SKDSKFVFSIVYN.GFTLG.V.........WV..DVNQGLMYVDTAHDPSTKNV-YTLTTDDL..NENMMLITNYKNNYHLRKLASAFMNGYLRFDNQVIRNIAYELFRKMRI...........................................................................................................................
Q9FZV9_BPGA1/1-335              ................................................MDEKL.FWKPQK.LLSY.SRILSCVI..GARGVGKSFAIKSKLVDDFLKNGRQFVYLRMYKTEISKN.KSKFF.DD..I.AIN..YPNTKFE.VKG............................NDFYIN..GKLA..GYAIPLSGWQALKSSSYPNVYTIFFDEFVR..E.KD...LTGYPPNV....VDSLLNVMDTVFRHRvndPAVRVICACN...AVTLVNPYFL...YFGFYP.NPNQE.FS..KNDSIV.V.QIVK.NEDYANAR.RDNRFGKLISGTA..YEEMSIDNKFTQD......SDLFVQK...R.....SKNSQFNFGIRYG.GKNYG.V.........WV..DREQMLMYLSEAYDPKSNQI-FALTSDDL..TEKNVLVGGWRGNYKLTKLVSAFKKGMLRFENQVVRKHGYDILKQMRI...........................................................................................................................
G9J3H3_9CAUD/1-339              .............................................msk-----.FFEIKEfIEEYpNHLIHCVI..GARGVGKSYSTKRLIIEEFLEYGKQALILRRYKNQAESM.ATTYF.TD..VlQKE..FPTVEYE.LKG............................DMGFIN..GEPF..CLFTGLNGNSLAKGSSFPNVYYIVYEEVMP..E.PG...E-KIIKDE....YKKLESIIVTVDRFE...DRIEVICVGN...NTSYYNPIFD...TLKLYP.STKPN.RV..VKNELMaIkTLET.PKEFKEYA.LNSKVGKLTVMSG..SSRYNIDNENISN......DRFNVCS...KkelwdTDKLEPVFKVRVDvDKVIK.I.........WK..CQSDTMFYYWVDNHNKGKCDEYFLD-LDY..QTDENKHISLCNKGLINRINFNNKVGAVFFNNAETKFYFNQ-------iglffk.....................................................................................................................
Q38007_BPCP1/1-360              ...........................................meate----K.WYNPQK.MLSY.NQYLNFVI..GGRGIGKTFALKKYLFKRFIEKGEQFIYLRRNKSELDRIdKDKFF.TTelL.KQV..FTN--FE.VIDsdaskihtkiifradnmeeeenilvlssTKIILN..GKIV..CYLKSLSTWVDLKGSEYDEVMSILYDEVLI..DvTS...KKRYLDNE....VEALLNFIFSVFRRR...DGCHAYLLSN...ASNFNNPYFA...FLKFYD.DNGKR.FYnlKQYATL.I.EFPP.HSAFQTEEeKESGFFKLLSKSS..IYESVANNEFQIK......NDKNIAK...I.....KGLKSRLYSFYCD.GTFLTgY.........YI..D---NMVYIAKGFDK--NLTAYCLEVEQV..EDGFVYL--NKASALGKTLRSLYLKNMFIYEDLETKNKFIEVIN----hvi........................................................................................................................
C7CWH2_ENTFL/65-383             qefkklptlmeaefqflflrryitqaksasrnlvladfyqpfldklpe-----.------.----.--------..---------------------------------------.-----.--..-.---..------E.VKKqyevfveyqgss....eepreillvfrnKELKKD..KKCIklGYLGAVSMAEKFRGPGLPKVKVILLDEFQ-..S.KK...NWDYLPNE....PVELEDIYESVGRLRcgtGDIKVIALGN...SGTILNPYFD...YYGYDEfTEVKT.VK..REGEVL.F.YHLP.NKAKRSEQ.S----KNLFKGSA..YGKYSLDNDFADN......QLFNVIRlkeA.....KAPRKCLYNIFFG.ETYIG.V.........WR..TG-DYKILISRVSDPDKLDI------VDR..TPIEEQV---LDQQVYRVLSDKLQNKQLYFDSPELRLIA---------ekhlrkyi...................................................................................................................
E0GIB7_ENTFL/62-380             qefkklptlmeaefqflflrryitqaksasrnlvladfyqpfldklpe-----.------.----.--------..---------------------------------------.-----.--..-.---..------E.VKKqyevfveyqgss....eepreillvfrnKELKKD..KKCIklGYLGAVSMAEKFRGPGLPKVKVILLDEFQ-..S.KK...NWDYLPNE....PVELEDIYESVGRLRcgtGDIKVIALGN...SGTILNPYFD...YYGYDEfTEVKT.VK..REGEVL.F.YHLP.NKAKRSEQ.S----KNLFKGSA..YGKYSLDNDFADN......QLFNVIRlkeA.....KAPRKCLYNIFFG.ETYIG.V.........WR..TG-DYKILISRVSDPDKLDI------VDR..TPIEEQV---LDQQVYRVLSDKLQNKQLYFDSPELRLIA---------ekhlrkyi...................................................................................................................
B1ABI1_9CAUD/2-358              ............................................itks---NE.FWTPKR.LLET.DDRIFLVV..GGRGVGKTFNVTGEALDDLFFNNVSMVYLRRLGVEIDELeKNNFItEE..M.LRV..YFGNRFSdFNAdeskqimrfsi......dgaiheikairNKIFFD..DRCI..VYFIALSRAGHVKSNNYPDVKYLVFDEVII..D.RSimpNARYIRNE....FTVLLNLIETIKRKR...EDFYLFMLSN...VGENFNPIFAglgYYLTHE.DIKKG.FV..KREDYC.V.QFVE.NKQEELNM.T------------..-------------......-------...-.....-------------.-----.-.........--..-----------------------------..------------------------------------------------dpfvrlgaknrdfsnsktnafenirtpyfkhygkkpkllvkydrqylgiaerkipsgleyyyqvyktldglenitvfnnnfdtlmedevfleetqlkkkfktyfelfqqnmvyhespetflew
A6XAE1_9CAUD/1-331              ................................................MKKKFsYYSFSK.VLSY.AGVFNMIM..GARGLGKTYGAKKIVIKNAINKGQQFIYLRRYKTEL-KG.RNSFF.AD..I.QHE..FPDEEFR.VEGqf........................aqRKVEKK..WETI..GYFIPLSTAQANKSIAYPNVYTIIFDEFII..D.KG...SLRYLPDE....AKVFMDFYSTVDRYQ...DRVRCLMLSN...AVSIMNPYFI...RFHIEP.KEGIS.RH..AEGFIV.T.DFVN.SEQFQSEV.AHTRFGSFITNYAedYADYSISNKFADN......YDDFVMR...K.....TGKAKYAFSLRCP.DGEVS.I.........WI..D---GGTWFAQRRQPRGDRVRWAYKVSDL..REGERLL--MYGDKVLSIMRSTYRKGRLFSDSPETRNMFAEIF-----vr.........................................................................................................................
C2DGS3_ENTFL/62-380             qefkklptlmeaefqflflrryitqaksasrnlvladfyqpfldklpe-----.------.----.--------..---------------------------------------.-----.--..-.---..------E.VKKqyevfveyqgss....eepreillvfrnKELKKD..KKCIklGYLGAVSMAEKFRGPGLPKVKVILLDEFQ-..S.KK...NWDYLPNE....PVELEDIYESVGRLRcgtGDIKVIALGN...SGTILNPYFD...YYGYDEfTEVKT.VK..REGEVL.F.YHLP.NKAKRSEQ.S----KNLFKGSA..YGKYSLDNDFADN......QLFNVIRlkeA.....KAPRKCLYNIFFG.ETYIG.V.........WR..TG-DYKILISRVSDPDKLDI------VDR..TPIEEQV---LDQQVYRVLSDKLQNKQLYFDSPELRLIA---------ekhlrkyi...................................................................................................................
VG16_BPB03/1-320                ................................................-----.------.MLSY.DRILNFVI..GARGIGKSYAMKKHPIKRFIKHGEQFIYVRRYKPELKKI.GN-YF.ND..I.AQE..FPNHEFK.VKG............................RQFCID..GKLT..GWAIPLSAWQSEKSNAYPMVTTIIFDEFIR..E.RD...NSGYIPNE....VDALLNLMDTVFRTR...ENGRCICLSN...AVSIINPYFV...YFGLVP.DINKR.FN..AYKHIL.I.EIPD.SKDFSDER.RKTKFGQLIDGTE..YGEMSLDNEFVND......SDVFIEK...R.....SKNSKFVFSIVYK.GMRMG.V.........WV..DTQQMLLYLTTDHDPSTKNV-YALTADDL..EEGMILVSNYKKNYHIRKLCSAFMNGQLRFDNQLMRTIGYEMFKKMRV...........................................................................................................................
E5G064_9VIRU/1-311              ..............................................me-----.------.----.--------..----------LTEKMIDDFLEYGAQSVVLRRLKTQTDEM.QETYF.DK..L.LESgaYDGYTFK.RVH............................NKMYID..GKLF..CTFLALNGSGVGRGGSYGKVMNIVVEEIMP..E.PG...EHKVK-RE....YQKLESFLATVDRFE...DRIKVFCVGN...NTGYYSPIFD...ALKLYP.TLKEEgYT..SNEVAV.I.QKAQsSNEFKETV.RKTKLGRLMEITG..TAKYNIDNENISN.....dTFNCVNK...Kel.keTNKLKLKFRVRVDkDKVIT.I.........WEcqGKEVSYYYVDNATKGLTQEYFFDFEY--Q..KGNNKHIT-QLNPYTIKELELNNKLGYIYFNNPETKYLFNQI------nlffknt....................................................................................................................
B7SSN7_BPNF/1-331               ................................................MKESL.YYDPNK.MLSY.DRILNFII..GARGIGKSYAMKKHPIKRFIKYGEQFIYVRRYKPELKKI.GN-YF.ND..I.AQE..FPNHEFK.VKG............................RQFFID..GKLA..GWAIPLSAWQSEKSNAYPMVTTIVFDEFIR..E.RD...NSGYIPNE....VDALLNLMDTVFRTR...ENGRCICLSN...AVSVINPYFV...YFGLVP.DINKR.FN..AYKHIL.I.EIPD.SKDFSDER.RKTKFGQLIDGTE..YGEMSLDNEFVND......SDVFIEK...R.....SKNSKFVFSIVYK.GMRMG.V.........WV..DAQQMLLYLTTDYDPSTKNV-YALTADDL..EEDMILVSNYKKNYHIRKLCSAFMNGQLRFDNQLMRTIGYEMFKKMRV...........................................................................................................................
Q9FZR6_9CAUD/43-390             ................................................MEKKQ.YFEISD.IESL.DPSMRFFIikGKKNIGKTYALLER-MKDLAQKGEKFLFLRISDSEVKFL.ANEWT.ND..V.---..--NNPFY.VKA............................NKIYVKqtKEHI..GLISHIKNLQKLRSLQYNDYSHIFFDEFVAfdE.KS...YGSSDSNAsltlVRNFIRLIMDVQRAK...EDIKIFCFGNndiAVDIFSKYFR...L-----.SINEP.YQ..VDNEAK.I.TFIN.LRHYYQGV.R----SSYAKGLA..FYDLVLDQYFSSNktmediTKLAVYD...S.....LHNGVIRYNILLN.DNYYT.LvellhktedKL..ELTNSFVITNTSKPEDNKRPLIALTKKDYinDSNAVELIDLQKRVLIQQWSNLIKKHKLKFTDKVIEKNFINFLAFNYI...........................................................................................................................
#=GC seq_cons                   .............................................................h.ph.s..h.hhh..Gt+slGKoashp.h.hpchhp.GtphlhlRh.csphtph.ts.ah.sc..l......a.s..hc.VKs............................+chhhD..tKhh..GahhsLSshpph+usuYPpVpsIlaDEFh...-.Kc...NhsYlPNE....sstL.slh-oVhRhR...-cl+sIsLuN...usollNPYFs...aash...s.sKp.hp..tps-sL.l.ph.s.scsapsEp.p....tpLhcGou..YuchSLDNcFhss......p.h.l.+...t.....ptspKhlasIhas.sthlG.V.........Wh..sh.phhhhlspspDPsppsl.h.hp.sDh..ptt...l...hsphhh+hLssthhst.LhFDs..hRhlu.p..................................................................................................................................
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