GenomeNet

Database: Pfam
Entry: Podovirus_Gp16
LinkDB: Podovirus_Gp16
Original site: Podovirus_Gp16 
#=GF ID   Podovirus_Gp16
#=GF AC   PF05894.9
#=GF DE   Podovirus DNA encapsidation protein (Gp16)
#=GF AU   Moxon SJ
#=GF SE   Pfam-B_9825 (release 8.0)
#=GF GA   20.90 20.90;
#=GF TC   26.90 148.50;
#=GF NC   18.80 17.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   3879485
#=GF RT   The complete sequence of Bacillus phage phi 29 gene 16: a
#=GF RT   protein required for the genome encapsidation reaction. 
#=GF RA   Garvey KJ, Saedi MS, Ito J; 
#=GF RL   Gene 1985;40:311-316.
#=GF DR   INTERPRO; IPR008784;
#=GF CC   This family consists of several DNA encapsidation protein (Gp16)
#=GF CC   sequences from the phi-29-like viruses. Gene product 16
#=GF CC   catalyses the in vivo and in vitro genome-encapsidation reaction
#=GF CC   [1]. 
#=GF SQ   2
#=GS B3VMQ2_BPPH2/1-331   AC B3VMQ2.1
#=GS R5FXH7_9ACTN/60-382  AC R5FXH7.1
B3VMQ2_BPPH2/1-331              ...MDKSLFYNPQKMLSYDRILNFVIGARGIGKSYAMKVYPINRFIKYGEQFIYVRRYKPELAKVSN.YFNDVAQEFPDHELVVKGRRFYIDGKLAGWAIPLSVWQSEK.SNAYPNVSTIVFDEFIREKDNS..NYIPNEVSALLNLMDTVFRNRERVRCICLSNAVSVVNPYFLFFNLVPDVNKRFN...VYDDALIEIPDSLDFSSERRKTRFGRLI..DGTEYGEMSLDNQFIGDSQVFIEKRSKDSKFVFSIVYNGFTLGVWVDVNQGLMYIDTAHDPSTKNVYTLTTDDLNENMMLITNYKNNYHLRKLASAFMNGYLRFDNQVIRNIAYELFRKMRI.............................................
R5FXH7_9ACTN/60-382             imk-----YYSLRKCLSYNRYLNILIGGRGIGKTYQLKKYVIEQYIKSKKQFVWLRRYKTEIKEATDgFFTKHKNNYPDHKFEIKGKTAYIDGEQAGRFIALTNADILKgSDDFSAVTTIVYDEFIIDNKSSfrRYLPNELRIFTDLQETIFRTRQDGKVFMLANALSMVNPYCLAFGIKFNYTPLFKndlIYAEML-STTNELAFAKAT--TPQNKLAtkYLPEYNDYANNESFLNDDYSQIERKPKDSIQLFNIKTNNNIIYFFFASSSQALYACQSGDPKTNP---------------------------------------------------------ftvnkiaesnrphagaeikkiksfavagrlffenlqiksevekli
#=GC seq_cons                   ........aYs.pKhLSYsRhLNhlIGuRGIGKoYthKhYsIppaIK.tcQFlalRRYKsEltcsos.aFschtppaPDHch.lKG+phYIDGc.AGhhIsLoshp..K.SssassVoTIVaDEFIh-pcsS..pYlPNElphhhsL.-TlFRsRpcs+shhLuNAlShVNPYhLhFslh.shs.hFp...lYs-hL.phsspLsFuptp..T..s+Lh...hsEYs-hu.sppFlsDs.s.IE++sKDSh.lFsIhhNs.hlhhahssspthhYhsputDPpTps......................................................................................................
//
DBGET integrated database retrieval system