GenomeNet

Database: Pfam
Entry: Prok-RING_1
LinkDB: Prok-RING_1
Original site: Prok-RING_1 
#=GF ID   Prok-RING_1
#=GF AC   PF14446.1
#=GF DE   Prokaryotic RING finger family 1
#=GF AU   Burroughs AM, Iyer LM, Aravind L
#=GF SE   Manual
#=GF GA   29.10 29.10;
#=GF TC   29.10 29.30;
#=GF NC   29.00 28.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   21547297
#=GF RT   Functional diversification of the RING finger and other
#=GF RT   binuclear treble clef domains in prokaryotes and the early
#=GF RT   evolution of the ubiquitin system.
#=GF RA   Burroughs AM, Iyer LM, Aravind L;
#=GF RL   Mol Biosyst. 2011;7:2261-2277.
#=GF CC   RING finger family found sporadically in bacteria and archaea,
#=GF CC   and  associated in gene neighborhoods with other components of
#=GF CC   the  ubiquitin-based signaling and degradation system, including
#=GF CC    ubiquitin, the E1 and E2 proteins and the JAB-like
#=GF CC   metallopeptidase.  The bacterial versions contain transmembrane
#=GF CC   helices [1].
#=GF SQ   24
#=GS D4MJ04_9FIRM/3-57       AC D4MJ04.1
#=GS D4KCM5_9FIRM/2-57       AC D4KCM5.1
#=GS C0E893_9CLOT/2-57       AC C0E893.1
#=GS D4K3Q4_9FIRM/2-57       AC D4K3Q4.1
#=GS D4L8K9_9FIRM/1-56       AC D4L8K9.1
#=GS B5IDG2_ACIB4/1536-1587  AC B5IDG2.1
#=GS G9RVU5_9FIRM/2-57       AC G9RVU5.1
#=GS A3ZZM9_9PLAN/215-267    AC A3ZZM9.1
#=GS G0P7C0_CAEBE/639-679    AC G0P7C0.1
#=GS D2R360_PIRSD/215-267    AC D2R360.1
#=GS H1N0N0_9PLAN/224-275    AC H1N0N0.1
#=GS E6UEW2_RUMA7/2-57       AC E6UEW2.1
#=GS D4JWG4_9FIRM/3-57       AC D4JWG4.1
#=GS E9SD51_RUMAL/2-57       AC E9SD51.1
#=GS G0PIH3_CAEBE/699-739    AC G0PIH3.1
#=GS D1YUL1_METPS/30-79      AC D1YUL1.1
#=GS D2R359_PIRSD/217-269    AC D2R359.1
#=GS B0PF21_9FIRM/16-71      AC B0PF21.1
#=GS E8R596_ISOPI/239-291    AC E8R596.1
#=GS B0MKC4_9FIRM/3-57       AC B0MKC4.1
#=GS H8I925_METCZ/22-70      AC H8I925.1
#=GS B5IDB3_ACIB4/1536-1587  AC B5IDB3.1
#=GS Q0W5A9_UNCMA/32-80      AC Q0W5A9.1
#=GS D4LCL0_RUMC1/1-56       AC D4LCL0.1
D4MJ04_9FIRM/3-57                  ....e-QFKNEKCAACGMKFFDDEDIVVCPECGAPYHRECWNRVGTCIHSAeHG-SYEWKg......
D4KCM5_9FIRM/2-57                  ....p-KYYGCPCEGCGKPLTLQDDIVVCPDCGAPYHRTCYEKMGLCIHAPaHGAGYEWKf......
C0E893_9CLOT/2-57                  ....a-NFIGEVCPICKQKFKSGDDIVVCPECGAPHHRSCYLEHGACAYHDrHAEGFTVSg......
D4K3Q4_9FIRM/2-57                  ....p-KYYGCPCEGCGKPLTLQDDIVVCPDCGAPYHRDCYEKLGQCIHRPaHAAGCEWKf......
D4L8K9_9FIRM/1-56                  ....m-EFTEYKCPVCDKQFKKGDDVVVCPECGAPHHRECYEKEGHCHFADkHGADFSFEk......
B5IDG2_ACIB4/1536-1587             ....k-NKEKVKCTLCRGTILPGMDIVICDTCGAVYHLPCAKRAGKCLK--.CGTPFNFE.......
G9RVU5_9FIRM/2-57                  ....m-DYKGCKCASCHKVLKEGDDIVICPECGAPYHRECYAAEGRCVFSAkHGKGFE--yvp....
A3ZZM9_9PLAN/215-267               ....p-NTMRTICNACGDVV--KEDGVACNDCGAIYHRRCWDPKVGCVLYS.CEGTTA--tea....
G0P7C0_CAEBE/639-679               ....s-NDPERNCYICKDDFENGDHVLICKTCKKPVHRSCWMK--------.--------wla....
D2R360_PIRSD/215-267               ...vv--IDGARCVVCGETL--ETDIVSCVKCKTPYHRDCWEYAGACSTFG.CGETRAV-ap.....
H1N0N0_9PLAN/224-275               dagpp------ICKVCGEAI--EGPRVFCAICRTPHHRDCWEYVGTCSIYG.CHGKHSV-sa.....
E6UEW2_RUMA7/2-57                  ....a-NYTGSKCICCGKRFTDEDDIVVCPDCGTPYHRSCYVENGKCINSElHDKNIGW-mp.....
D4JWG4_9FIRM/3-57                  ....e-QFKNEKCAACGMKFFDDEDIVVCPECGAPYHRECWNRVGTCIHSAeHG-SYEWKg......
E9SD51_RUMAL/2-57                  ....t-KYTGSKCICCGERFADGDDIVVCPECGTPYHRECYIKEGKCINTSlHEKNVSW-lp.....
G0PIH3_CAEBE/699-739               ....s-NDPERNCYICKDDFENGDQVLICKTCKKPVHRSCWMK--------.--------wla....
D1YUL1_METPS/30-79                 ....s-RDEAGRCDECGLKVK-KEDALQCHMCSAVYHRWCA--GAECNV--.CKTPMEVKa......
D2R359_PIRSD/217-269               ...lv--DVKTACPVCSDEL--SGALVQCTACKTSHHRDCWSYFGSCATYG.CGSKRCRNv......
B0PF21_9FIRM/16-71                 ....a-NYTGARCPVCNKRFTDNDDIVVCPVCGAPHHRECYSRLGHCALAElHIDGHTWQp......
E8R596_ISOPI/239-291               snrep-----PICQFCGEPI--QGDHVRCQQCHTPHHADCWDTNNGCSIFS.CK------crqmvvv
B0MKC4_9FIRM/3-57                  ....e-QFKNEKCAACGMKFFDDEDIVVCPECGAPYHRECWNRVGTCIHSAeHG-SYEWKg......
H8I925_METCZ/22-70                 ....k-KDEAGRCDECGLKVK-KDDAVVCPMCSAVYHRWCA---TECNV--.CKTPF---derl...
B5IDB3_ACIB4/1536-1587             ....k-NKEKVKCTLCRGTILPGMDIVICDTCGAVYHLPCAKRAGKCLK--.CGTPFNFE.......
Q0W5A9_UNCMA/32-80                 ....e-ADESGRCDECGLKVK-KDDATVCPACTATYHRWCV---TECNR--.CNTPLNS-de.....
D4LCL0_RUMC1/1-56                  .....MDYTNKLCSKCGKPFRPEDDVVVCPECGSPYHRACWEEAGGCINTAlHQSGGSWQa......
#=GC seq_cons                      ......phpsspCshCGcphh.p-DlVlCspCGAPYHRpCapchGpChh.s.pttshph.h......
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