GenomeNet

Database: Pfam
Entry: Prok-RING_1
LinkDB: Prok-RING_1
Original site: Prok-RING_1 
#=GF ID   Prok-RING_1
#=GF AC   PF14446.5
#=GF DE   Prokaryotic RING finger family 1
#=GF AU   Burroughs AM, Iyer LM, Aravind L
#=GF SE   Manual
#=GF GA   29.10 29.10;
#=GF TC   29.10 29.20;
#=GF NC   28.80 29.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   21547297
#=GF RT   Functional diversification of the RING finger and other
#=GF RT   binuclear treble clef domains in prokaryotes and the early
#=GF RT   evolution of the ubiquitin system.
#=GF RA   Burroughs AM, Iyer LM, Aravind L;
#=GF RL   Mol Biosyst. 2011;7:2261-2277.
#=GF CC   RING finger family found sporadically in bacteria and archaea,
#=GF CC   and  associated in gene neighborhoods with other components of
#=GF CC   the  ubiquitin-based signaling and degradation system, including
#=GF CC    ubiquitin, the E1 and E2 proteins and the JAB-like
#=GF CC   metallopeptidase.  The bacterial versions contain transmembrane
#=GF CC   helices [1].
#=GF SQ   64
#=GS M5FYV8_DACPD/235-279      AC M5FYV8.1
#=GS A0A136K161_9BACT/3-54     AC A0A136K161.1
#=GS R6T2N4_9FIRM/3-56         AC R6T2N4.1
#=GS F8DAY1_HALXS/20-54        AC F8DAY1.1
#=GS R6GQX3_9CLOT/3-57         AC R6GQX3.1
#=GS R7F8M1_9FIRM/4-57         AC R7F8M1.1
#=GS R6UCX1_9CLOT/2-55         AC R6UCX1.1
#=GS W1PIR8_AMBTC/145-184      AC W1PIR8.1
#=GS A0A0B3VKX4_9FIRM/3-55     AC A0A0B3VKX4.1
#=GS R6Y3H6_9FIRM/3-56         AC R6Y3H6.1
#=GS R9M659_9FIRM/3-56         AC R9M659.1
#=GS G9RVU5_9FIRM/3-56         AC G9RVU5.1
#=GS G0P7C0_CAEBE/640-679      AC G0P7C0.1
#=GS R5DT60_9FIRM/2-55         AC R5DT60.1
#=GS D4K3Q4_9FIRM/3-56         AC D4K3Q4.1
#=GS A0A142YD80_9PLAN/225-272  AC A0A142YD80.1
#=GS R6MU41_9FIRM/2-55         AC R6MU41.1
#=GS A3ZZM9_9PLAN/216-265      AC A3ZZM9.1
#=GS E6UEW2_RUMA7/3-56         AC E6UEW2.1
#=GS D2R359_PIRSD/219-268      AC D2R359.1
#=GS R5GQ20_9FIRM/3-56         AC R5GQ20.1
#=GS R6EIU8_9FIRM/2-59         AC R6EIU8.1
#=GS M1MJV2_9CLOT/3-54         AC M1MJV2.1
#=GS R6QRD2_9CLOT/2-55         AC R6QRD2.1
#=GS R7MRY6_9FIRM/2-55         AC R7MRY6.1
#=GS U2DGQ1_CLOS4/3-56         AC U2DGQ1.1
#=GS R6P286_9CLOT/3-56         AC R6P286.1
#=GS R6CMF0_9FIRM/3-56         AC R6CMF0.1
#=GS B0PF21_9FIRM/17-70        AC B0PF21.1
#=GS M1MYV7_9CLOT/2-53         AC M1MYV7.1
#=GS K6UBZ4_9CLOT/2-53         AC K6UBZ4.1
#=GS J1H3N7_9CLOT/2-55         AC J1H3N7.1
#=GS R6DEQ5_9CLOT/4-58         AC R6DEQ5.1
#=GS A0A0J1DL48_9FIRM/14-64    AC A0A0J1DL48.1
#=GS C0E893_9FIRM/3-56         AC C0E893.1
#=GS L0DB65_SINAD/226-274      AC L0DB65.1
#=GS R5MJ60_9FIRM/2-55         AC R5MJ60.1
#=GS R5L268_9CLOT/3-56         AC R5L268.1
#=GS R6Q9U7_9FIRM/3-56         AC R6Q9U7.1
#=GS Q0W5A9_METAR/33-84        AC Q0W5A9.1
#=GS K6TYA4_9CLOT/2-54         AC K6TYA4.1
#=GS R5XLT4_9FIRM/3-56         AC R5XLT4.1
#=GS W7V2Y3_RUMFL/2-55         AC W7V2Y3.1
#=GS E9SD51_RUMAL/3-56         AC E9SD51.1
#=GS D4LCL0_RUMC1/2-55         AC D4LCL0.1
#=GS G0N885_CAEBE/210-249      AC G0N885.1
#=GS A0A136JZ87_9BACT/7-60     AC A0A136JZ87.1
#=GS R6NKW4_9CLOT/2-55         AC R6NKW4.1
#=GS D2R360_PIRSD/217-265      AC D2R360.1
#=GS R5UYS9_9FIRM/3-56         AC R5UYS9.1
#=GS R7KZN4_9FIRM/3-56         AC R7KZN4.1
#=GS D4JWG4_9FIRM/4-56         AC D4JWG4.1
#=GS R7NJ19_9FIRM/2-55         AC R7NJ19.1
#=GS D4KCM5_9FIRM/3-56         AC D4KCM5.1
#=GS R5AAE6_9CLOT/3-56         AC R5AAE6.1
#=GS R6DV58_9FIRM/2-55         AC R6DV58.1
#=GS U2KMF3_9FIRM/4-56         AC U2KMF3.1
#=GS K2SDZ0_MACPH/329-377      AC K2SDZ0.1
#=GS R6IX88_9FIRM/2-55         AC R6IX88.1
#=GS A0A0P6XK24_9CHLR/291-341  AC A0A0P6XK24.1
#=GS R6Q9T1_9FIRM/3-56         AC R6Q9T1.1
#=GS G0PIH3_CAEBE/700-739      AC G0PIH3.1
#=GS B5IDB3_ACIB4/1537-1587    AC B5IDB3.1
#=GS A0A0S8BP27_9CHLR/13-66    AC A0A0S8BP27.1
M5FYV8_DACPD/235-279                 ....pq--EGNDCPICYESMPPGe..eEGLVFCP.ACGNGLHRGCFEQW.G.K-.-------------tpn......
A0A136K161_9BACT/3-54                ..nsel----KTCEYCHSNIKLN....SDVVICP.RCQTPYHPDCWLEN.D.GC.AVY----------gcgyktss.
R6T2N4_9FIRM/3-56                    ......NYTGKKCFSCGEVFKDG....DDIVVCP.ECGTPYHRECYLKE.G.KC.INDALHESGQSWE.........
F8DAY1_HALXS/20-54                   .....l--EGRSCPSCGGELERDvykdKDAVVCA.ECGTP---------.-.--.-------------raq......
R6GQX3_9CLOT/3-57                    nyrkfg-----ECPVCNVECKID....EDIVVCP.ECGAPYHRECYNSV.G.QC.VYKEKHSQGFSY-t........
R7F8M1_9FIRM/4-57                    ....rh--VGQECFGCHQKLQED....DDIVVCP.ECGTPYHRACWQKT.G.HC.LNAPLHASGKSWD.........
R6UCX1_9CLOT/2-55                    ......NYYNQKCPGCHKAFNKD....DDIVVCP.VCGTPQHRECYEKE.N.RC.VNYDKHSKTYEWN.........
W1PIR8_AMBTC/145-184                 ...grg----GLCPVCFEGMDDE....GEVVVCG.RCRNGLHRECWGE-.-.--.-------------wkrr.....
A0A0B3VKX4_9FIRM/3-55                ....ei--KNNKCCVCGGKIMSE....EDLTVCE.NCNNIYHKMCWQEVkE.EC.IY--CHN------kikeee...
R6Y3H6_9FIRM/3-56                    ......DYTGIKCPVCGVPFRSG....DDIVVCP.ECGAPYHRACYQEK.G.AC.IFDDLHKEGKEWK.........
R9M659_9FIRM/3-56                    .....h-YTGVHCPVCDKKFTDE....DDIVVCP.VCGTPHHRACYQQE.G.RC.AFEEQHIKGHTWE.........
G9RVU5_9FIRM/3-56                    ......DYKGCKCASCHKVLKEG....DDIVICP.ECGAPYHRECYAAE.G.RC.VFSAKHGKGFEY-v........
G0P7C0_CAEBE/640-679                 ....nd--PERNCYICKDDFENG....DHVLICK.TCKKPVHRSCWMK-.-.--.-------------wla......
R5DT60_9FIRM/2-55                    .....e-FTEYKCPVCDKQFKKG....DDIVVCP.ECGAPHHRECYEKE.G.HC.HFADKHGADFSFE.........
D4K3Q4_9FIRM/3-56                    ......KYYGCPCEGCGKPLTLQ....DDIVVCP.DCGAPYHRDCYEKL.G.QC.IHRPAHAAGCEWK.........
A0A142YD80_9PLAN/225-272             ..egpa-----VCKVCGEVADLG....-PLVVCV.KCGAPHHRDCWEFV.G.WC.S------------iygcggki.
R6MU41_9FIRM/2-55                    .....d-FYKYKCPVCNKQFKEG....DDIVVCP.ECGTPHHRECYEQE.E.HC.FYQDKHSQNFSFE.........
A3ZZM9_9PLAN/216-265                 ....nt--MRTICNACGDVVKED....--GVACN.DCGAIYHRRCWDPK.V.GC.VLYSCEG------ttat.....
E6UEW2_RUMA7/3-56                    ......NYTGSKCICCGKRFTDE....DDIVVCP.DCGTPYHRSCYVEN.G.KC.INSELHDKNIGW-m........
D2R359_PIRSD/219-268                 .....d--VKTACPVCSDELSGA....--LVQCT.ACKTSHHRDCWSYF.G.SC.-ATYGCGSKRC--rn.......
R5GQ20_9FIRM/3-56                    .....r-FDNKLCPICRRPLNDK....SDVVVCP.VCGTPHHRACYMAA.G.HC.GVESYHAQGFEWK.........
R6EIU8_9FIRM/2-59                    ......NKFEDICPICGQEIAKEaverGDAVICP.DCGTSYHKACWEKA.G.GC.VTFACPSKPKV--qt.......
M1MJV2_9CLOT/3-54                    ......NYIGKICPYCKDEFKEN....DEVISCS.ACEMPHHKECWTQN.Q.GC.TTFGC--------tgiite...
R6QRD2_9CLOT/2-55                    ......DYTGKKCPICSEKFKAD....DDIVVCP.KCGAPYHRSCYEKE.G.RC.IFLDLHRSNEAWK.........
R7MRY6_9FIRM/2-55                    ......NYIGEKCICCNKEFQQG....DDVVVCP.ECGTPYHRDCYKQN.G.AC.INNELHEKGESWQ.........
U2DGQ1_CLOS4/3-56                    .....s-YKGELCPVCHKAFADG....DQIVVCP.ECGTPHHRDCYFQL.G.HC.ANAERHGEDFAWQ.........
R6P286_9CLOT/3-56                    ......DYTGVPCPICGKAFHEG....DDIVVCP.ICGTPYHRACYEKE.G.RC.LFEDKHKEGYVF-h........
R6CMF0_9FIRM/3-56                    ......KYIGAKCSVCGEMFKDG....DDIVVCP.DCGTPYHRACWDKN.G.EC.INHELHESGMSW-s........
B0PF21_9FIRM/17-70                   ......NYTGARCPVCNKRFTDN....DDIVVCP.VCGAPHHRECYSRL.G.HC.ALAELHIDGHTWQ.........
M1MYV7_9CLOT/2-53                    ......DFTGKICPYCKGEFKED....DEIVLCS.ICEMPHHKECWVEN.Q.GC.TTFGCT-------gtimg....
K6UBZ4_9CLOT/2-53                    .....s-YVGKVCPYCKSEFKED....DEVVICS.VCEMPHHKECWIEN.K.AC.TTFGCT-------gtimg....
J1H3N7_9CLOT/2-55                    ......KYTGIKCPVCGIPFQAD....DDIVVCP.DCGAPYHRHCYEKE.G.KC.LFSDTHNTGTYW-t........
R6DEQ5_9CLOT/4-58                    ......NYKGVSCPVCGQEFKEG....DDIVVCP.ECGAPHHRSCYKQL.G.HCaLQQELHEKGMEWK.........
A0A0J1DL48_9FIRM/14-64               .....q--VGRPCNHCAQEFAPG....DEVVECP.RCHKYHHAACWKEK.G.GC.ATRGCP-------qvaqa....
C0E893_9FIRM/3-56                    ......NFIGEVCPICKQKFKSG....DDIVVCP.ECGAPHHRSCYLEH.G.AC.AYHDRHAEGFT--vs.......
L0DB65_SINAD/226-274                 ...gpp-----ICKVCGEAIEGP....--RVFCA.ICRTPHHRDCWEYV.G.TC.SIYGCHGKHS---vs.......
R5MJ60_9FIRM/2-55                    ......DYRGQHCPICGKEFCDG....DDIVVCP.ECGTPYHRECYKTA.G.HC.VNEERHGESFEWK.........
R5L268_9CLOT/3-56                    .....l-YENQKCPVCGVAFKSG....DDIVTCP.ECGTPHHRQCYEKV.G.KC.ANAELHRSGFVY-n........
R6Q9U7_9FIRM/3-56                    ......KYYGCPCEGCGQPLTLR....DDIVVCP.DCGAPYHRTCYEKL.G.RC.IHSPAHAAGYEWK.........
Q0W5A9_METAR/33-84                   ..ades----GRCDECGLKVKKD....-DATVCP.ACTATYHRWCVTEC.N.RC.-NTPLNS------deaeer...
K6TYA4_9CLOT/2-54                    ......DFTGKICPYCKSEFKED....DDVVICS.VCEMPHHKECWSEN.K.AC.STFGCTGTNM---sa.......
R5XLT4_9FIRM/3-56                    .....l-YDNQKCPVCGELFKEG....DDVVTCP.ICGTPHHRSCYKKL.G.TC.ANESLHLKGFVY-n........
W7V2Y3_RUMFL/2-55                    ......DYIGEKCPVCEKIFTAD....DDIVVCP.DCGTPHHRSCYAAE.K.KC.ANEEYHSTGRKWE.........
E9SD51_RUMAL/3-56                    ......KYTGSKCICCGERFADG....DDIVVCP.ECGTPYHRECYIKE.G.KC.INTSLHEKNVSW-l........
D4LCL0_RUMC1/2-55                    ......DYTNKLCSKCGKPFRPE....DDVVVCP.ECGSPYHRACWEEA.G.GC.INTALHQSGGSWQ.........
G0N885_CAEBE/210-249                 ...dnp---EMNCYICRNDYENG....DQVLICK.TCKKPVHRSCWMK-.-.--.-------------wla......
A0A136JZ87_9BACT/7-60                ....es--RNKNCPYCQSPVKRN....EATVVCP.ECGISHHPECWEEN.E.GC.TTFGCRNQK----ilrq.....
R6NKW4_9CLOT/2-55                    ......KYNGLPCPVCGRIMTDD....DDIVVCP.ECATPQHRECWMKT.G.HC.VNEDKHSSGYVW-a........
D2R360_PIRSD/217-265                 ....id---GARCVVCGETLET-....-DIVSCV.KCKTPYHRDCWEYA.G.AC.STFGCG-------etrav....
R5UYS9_9FIRM/3-56                    ......DYTGQSCFVCQKPFEPE....DDVVVCP.ECGTPYHRACWQHY.G.HC.INVHLHENGGSWK.........
R7KZN4_9FIRM/3-56                    ......NYTGYECKSCGKKFTDD....DDIVVCP.ECGTPYHRDCYKKE.G.RC.INDELHSKHMSWK.........
D4JWG4_9FIRM/4-56                    .....q-FKNEKCAACGMKFFDD....EDIVVCP.ECGAPYHRECWNRV.G.TC.IHSAEHGS-YEWK.........
R7NJ19_9FIRM/2-55                    ......DYIGFRCPVCDKNFHAD....DDVVVCP.VCGTPHHRKCYEEL.G.HC.YNEDKHSEGYDFE.........
D4KCM5_9FIRM/3-56                    ......KYYGCPCEGCGKPLTLQ....DDIVVCP.DCGAPYHRTCYEKM.G.LC.IHAPAHGAGYEWK.........
R5AAE6_9CLOT/3-56                    ......DYTGIKCPVCGVPFRSG....DDIVVCP.QCGAPYHRACYQEK.G.KC.IFDDLHQEDKAWE.........
R6DV58_9FIRM/2-55                    ......NYTGKICDGCREPLKEG....DDIVVCP.ICGTPQHRSCYEKN.N.KC.VNEYLHSTGFTW-t........
U2KMF3_9FIRM/4-56                    .....h--TGEKCIVCGQVFTDA....DDVVVCP.ECGTPYHRACWQKN.G.AC.INLPLHESGKSWE.........
K2SDZ0_MACPH/329-377                 ....kt--TDDECPICQSSMATNe..lADLVWCKaQCGTNFHRECWTM-.-.--.-------------wertrrssr
R6IX88_9FIRM/2-55                    ....dl--NGQKCPACGRNFDHD....DDIVVCP.VCGTPQHRACWDER.G.EC.VNASRHAEGYVWQ.........
A0A0P6XK24_9CHLR/291-341             ....gk--EEMRCPYCLQIIEPHd..pNGIVVCP.ICHTAHHKECWDIT.G.SC.QVPHNH-------am.......
R6Q9T1_9FIRM/3-56                    .....s-YKNEKCPVCNQEFKDG....DDIVTCP.VCGTPHHRECYKKI.G.HC.FNEDKHAEGYEFK.........
G0PIH3_CAEBE/700-739                 ....nd--PERNCYICKDDFENG....DQVLICK.TCKKPVHRSCWMK-.-.--.-------------wla......
B5IDB3_ACIB4/1537-1587               ......NKEKVKCTLCRGTILPG....MDIVICD.TCGAVYHLPCAKRA.G.KC.---LKCGTPFNF-e........
A0A0S8BP27_9CHLR/13-66               ...pfl---GEACALCKQPLSPG....DELAICP.EDATRHHAHCWRAN.GnKC.TAYGC--------tghgell..
#=GC seq_cons                        .......ahsppCssCspthpps....DDlVVCP.pCGsPaHRpCapct.G.pC.h..thHtpsh.a..........
//
DBGET integrated database retrieval system