GenomeNet

Database: Pfam
Entry: PyocinActivator
LinkDB: PyocinActivator
Original site: PyocinActivator 
#=GF ID   PyocinActivator
#=GF AC   PF11112.6
#=GF DE   Pyocin activator protein PrtN
#=GF AU   Pollington J, Finn RD
#=GF SE   PRODOM
#=GF GA   24.00 24.00;
#=GF TC   24.20 24.50;
#=GF NC   23.50 23.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 17690987 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   16109947
#=GF RT   PtrB of Pseudomonas aeruginosa suppresses the type III secretion
#=GF RT   system under the stress of DNA damage. 
#=GF RA   Wu W, Jin S; 
#=GF RL   J Bacteriol. 2005;187:6058-6068.
#=GF RN   [2]
#=GF RM   8444788
#=GF RT   Regulation of pyocin genes in Pseudomonas aeruginosa by positive
#=GF RT   (prtN) and negative (prtR) regulatory genes. 
#=GF RA   Matsui H, Sano Y, Ishihara H, Shinomiya T; 
#=GF RL   J Bacteriol. 1993;175:1257-1263.
#=GF DR   INTERPRO; IPR020518;
#=GF CC   PrtN is a transcriptional activator for pyocin synthesis genes
#=GF CC   [1]. It activates the expression of various pyocin genes by
#=GF CC   interaction with the DNA sequences conserved in the 5' noncoding
#=GF CC   regions of the pyocin genes [2].
#=GF SQ   63
#=GS V2VXB0_9GAMM/8-81       AC V2VXB0.1
#=GS A0A0N0E4A2_9PSED/19-92  AC A0A0N0E4A2.1
#=GS Q12J27_SHEDO/3-75       AC Q12J27.1
#=GS Q489Y7_COLP3/3-75       AC Q489Y7.1
#=GS N9GRC2_ACIHA/10-83      AC N9GRC2.1
#=GS K2QRM2_9RHIZ/3-76       AC K2QRM2.1
#=GS F6AAN4_PSEF1/3-77       AC F6AAN4.1
#=GS S6AGC0_PSERE/3-77       AC S6AGC0.1
#=GS Q87ZJ9_PSESM/19-92      AC Q87ZJ9.1
#=GS D7N302_9NEIS/39-112     AC D7N302.1
#=GS A0A0N0E152_9PSED/19-92  AC A0A0N0E152.1
#=GS A0A024HBI4_PSEKB/16-89  AC A0A024HBI4.1
#=GS F2LCH9_BURGS/3-77       AC F2LCH9.1
#=GS Q5F6E5_NEIG1/6-79       AC Q5F6E5.1
#=GS A4C8Q7_9GAMM/3-75       AC A4C8Q7.1
#=GS A0A0M9GDZ0_9PSED/3-77   AC A0A0M9GDZ0.1
#=GS A3TSM2_OCEBH/7-81       AC A3TSM2.1
#=GS C1D879_LARHH/3-74       AC C1D879.1
#=GS A4JGR4_BURVG/3-77       AC A4JGR4.1
#=GS Q88IG8_PSEPK/19-92      AC Q88IG8.1
#=GS F2K1D4_MARM1/5-78       AC F2K1D4.1
#=GS A0A089YEZ0_9PSED/3-77   AC A0A089YEZ0.1
#=GS D3V630_XENBS/3-75       AC D3V630.1
#=GS Q88A27_PSESM/12-86      AC Q88A27.1
#=GS F6AIH8_PSEF1/13-86      AC F6AIH8.1
#=GS E1VAY7_HALED/21-94      AC E1VAY7.1
#=GS U4K2K2_9VIBR/3-75       AC U4K2K2.1
#=GS A3XAC1_9RHOB/7-81       AC A3XAC1.1
#=GS W8UCX1_YEREN/3-75       AC W8UCX1.1
#=GS E0WV46_9ENTR/3-75       AC E0WV46.1
#=GS C4GGD9_9NEIS/7-81       AC C4GGD9.1
#=GS B5JYE9_9GAMM/1-67       AC B5JYE9.1
#=GS F6AFE5_PSEF1/8-84       AC F6AFE5.1
#=GS D3V385_XENBS/5-77       AC D3V385.1
#=GS F9RDD8_VIBSN/9-80       AC F9RDD8.1
#=GS A0A097QNB2_9VIBR/3-75   AC A0A097QNB2.1
#=GS A3TSF2_OCEBH/3-75       AC A3TSF2.1
#=GS PRTN_PSEAE/16-89        AC Q06552.1
#=GS A0A0F4R232_9GAMM/3-76   AC A0A0F4R232.1
#=GS N8TKR6_ACIGI/8-81       AC N8TKR6.1
#=GS A0A070C6S1_BURCE/3-77   AC A0A070C6S1.1
#=GS A4XZG9_PSEMY/19-92      AC A4XZG9.1
#=GS E3HZK4_RHOVT/3-77       AC E3HZK4.1
#=GS C6RSC9_ACIRA/16-89      AC C6RSC9.1
#=GS C5B6W0_METEA/3-77       AC C5B6W0.1
#=GS A0A0N1J5J9_9PSED/3-77   AC A0A0N1J5J9.1
#=GS G2IX75_PSEUL/4-76       AC G2IX75.1
#=GS A0A0B5E394_9RHOB/3-76   AC A0A0B5E394.1
#=GS B5JYE2_9GAMM/9-65       AC B5JYE2.1
#=GS G8Q4G2_PSEFL/19-92      AC G8Q4G2.1
#=GS D7HV65_PSESS/12-86      AC D7HV65.1
#=GS A0A077LPW2_9PSED/19-92  AC A0A077LPW2.1
#=GS H0JJR3_9PSED/3-77       AC H0JJR3.1
#=GS J1QP64_9ENTR/3-75       AC J1QP64.1
#=GS B9NP51_9RHOB/1-70       AC B9NP51.1
#=GS A0A024HDH2_PSEKB/19-92  AC A0A024HDH2.1
#=GS W0HBD4_PSECI/4-79       AC W0HBD4.1
#=GS A0A077FC43_9PSED/3-77   AC A0A077FC43.1
#=GS Q4KF82_PSEF5/19-92      AC Q4KF82.1
#=GS A0A0M2KAL4_9ENTR/3-75   AC A0A0M2KAL4.1
#=GS A6D442_9VIBR/5-75       AC A6D442.1
#=GS V2UUQ1_9GAMM/6-79       AC V2UUQ1.1
#=GS A0A0F5ARS2_9GAMM/3-75   AC A0A0F5ARS2.1
V2VXB0_9GAMM/8-81                  .........TNEYLFIKYR.SMTVELMAVVADYYPHL.SKAEALRKANNQEF.PFSVFKID.QSKRAPFLVHVKDLADILDKKYSEA........
A0A0N0E4A2_9PSED/19-92             .........TVELLYRTFG.DVLIPLEKLRVQYFRNL.NEQTFATEIQNGRI.QLPVTTLD.NSRKAPKFVHIKHVAALIDIRAYKA........
Q12J27_SHEDO/3-75                  .........TAFLLMAQFN.KAIVPLDEICKTYFG-L.ESRTAQNYAKAGRL.PVAAFRTG.SSNKAPWLVNITDLAEYLDKQRDAA........
Q489Y7_COLP3/3-75                  .........TNFALLARFE.SPVIELKDVCQEFFG-I.SVKTAKQKIKGQDF.PVPTFSLS.KSERSPVFIKVEDLASYIDKQYEIA........
N9GRC2_ACIHA/10-83                 ......lys---MLTMRYQ.APVVQLEIILKDYFPHM.NKQSANKRASRQDL.PFPVFKSD.NSQKSPYLVDLKEFSIYLYKQS---qis.....
K2QRM2_9RHIZ/3-76                  .........TAFLLMAMYSgRPIIPAEEVAKGFFG-L.TTDKFVRKVSAGDI.ALPLVRME.ASQKCAKGVHLNDLAAYLDERRAAA........
F6AAN4_PSEF1/3-77                  .........TLFLLMAQYNgQVIIPLGQVCRDYFTHL.TPDMFQRKALAGQI.KIPITRME.SSQKSAKGIHLQDLAAYLDEQRAAA........
S6AGC0_PSERE/3-77                  .........TMFLLMAQYGaTAIVPLDRLCQDYFSHL.TPEKFQRKVLSGEI.DLPIVRME.GSQKTARGVHVRDLAAYLDARHRKA........
Q87ZJ9_PSESM/19-92                 .........TVELLYRTFG.DVLIPLDKLREQYFRNL.NERSFVAEIENGRI.PLPITTLD.TSRKAPKFAHIRHVAALIDIRAYKA........
D7N302_9NEIS/39-112                .........TQQRLLLIYG.KTHITLEQAVADWMPHI.NIERAKRRAKTQTL.PWPVISSE.DSQKSGLFVSLAAIAEWLDLREQEA........
A0A0N0E152_9PSED/19-92             .........TVELLYRTFG.DVLIPLEKLRVQYFRNL.NEQTFAAEIQNGRI.QLPVTTLD.NSRKAPKFVHIKHVAALIDIRAYKA........
A0A024HBI4_PSEKB/16-89             .........TVTLVYQIFG.DVLVPLEQVRERWFRNL.NRENFGKALACGRI.ALPVTTLD.DSHKAMQFVSVDHLAAFVEQRASLA........
F2LCH9_BURGS/3-77                  .........TIFLLMAQYGaAAVIPIELVCRDYFSHL.TPEKLQRKINAGEI.ALPLVRIE.GSQKAAKGMHVADLAAYIDQRRAAA........
Q5F6E5_NEIG1/6-79                  .......eq---GLLIAYGgRPYIPPREVHKDFFAHI.GFNAFKASGVRCEL.PFPIFRLS.DSRKSEYFVSVRELAKAIADKEEKA........
A4C8Q7_9GAMM/3-75                  .........TAFALLARYG.KSELELREICVDYFG-I.TPETANQKAKAHAL.PVPTFKLR.NSERSPTLVKVEDLAAYIDKQHQAA........
A0A0M9GDZ0_9PSED/3-77              .........TAFLLMAQYGgQAIIPIERVCADYFSHL.TPEKLKLKVAKGEI.NLTLVCME.ASQKSARGVHLNDLAAYLDAQHAKA........
A3TSM2_OCEBH/7-81                  tlmtilafn---------EgDPLVDLERIATHYFD-T.SVEKFMRKVRKGDI.PLPIMEMEpGNRKSRKGVLVTDLANYLHDRAEEA........
C1D879_LARHH/3-74                  .........TLFLLMAQYQ.KAAVSLNEISEEYLG-M.TPRRANELASANRL.PLATFQLY.-SQKSPRMVHLSDLADWLDTQREAA........
A4JGR4_BURVG/3-77                  .........TVFLLMAQYGaTAVVPVEFVCRDYFSHL.TVPQFVRKVSAGDI.AIPLVRME.RSQKAAKGVHIQDLADYIDERRAAA........
Q88IG8_PSEPK/19-92                 .........TVELLYRTFG.DVLIPLDKVRVQYFRNL.NEDTFAEQLKVGRI.CLPITTLD.NSQKALKFAHIRHVAALIDSRAYLA........
F2K1D4_MARM1/5-78                  .........TLFLLMAEFEgRTAVPLAE-ALHYTNYT.TLAEANKAANAATL.SIPAFRMA.DSQKSPYMVHLEDLAVCIDAARKKA........
A0A089YEZ0_9PSED/3-77              .........TAFMLMAQYNgLAIIPIDQVCTDYFTHL.TPDMFQRKVFAGQI.KLPITRLE.ASQKSARGIHIADLAHYLDQQREAA........
D3V630_XENBS/3-75                  .........TAFLLMAEFE.TSQIPLSDIAERYFK-M.SPGTAERKANEGKL.GIPTYKLN.DSQKSPRIVHVNDLAAYIDKQREQA........
Q88A27_PSESM/12-86                 ........i-LDQLRKEFA.TPCPSLSAVRERYFSHLsNDRNLLRKINAGRI.ALKVSRTG.GTRQGHPFVYLHDLANYLSDIV---tnr.....
F6AIH8_PSEF1/13-86                 .........TLELLFRTHG.DVLVPIDRVRTVYFRHL.SADNFIRAIATGRL.NLPITTLD.SSAKAPKFIELHHLAAYIDSCAKAA........
E1VAY7_HALED/21-94                 .........TAALLYREFG.DVLIPIEAVRQRYFRNR.KAERFRRALREGEI.PLPVVKLD.SSYKGQGFICLYQLAAYIEHQARQA........
U4K2K2_9VIBR/3-75                  .........TNFALLARFG.SPTVQLKEICNEFFG-I.TPKTAEERAKACDF.PIPTFKLR.ESQRCPTMVKVEDLAQYIDKQYEVA........
A3XAC1_9RHOB/7-81                  .........TTFFLMAQYNgQAVIPADKVREDFFSHL.TLPKFIRKINEGQL.ALPLVRIE.ASQKSAKGVHLQDLADYLDAKRAEA........
W8UCX1_YEREN/3-75                  .........TTFLLMAEFE.TSTIPLSDIAERYFG-M.KPATADKKAGAGDL.PVPTFRIG.DSQKAPRMVHVNDLADFIDKRRGEA........
E0WV46_9ENTR/3-75                  .........TMFLLMAEFE.TSTIPLSSIAERYLG-M.KPSTADKKAGAGDL.PIPTFRMG.NTQKAPRMVHVNDLAAFIDKRRKEA........
C4GGD9_9NEIS/7-81                  .........TAFVLTMRYQ.STCIPLEEVRRQWLPHL.SESEMKKKASCQSL.PFPVFRADkNSRKSPYLVNVADVAAYLDSQAQQA........
B5JYE9_9GAMM/1-67                  .........-----MSIYE.ACDIPLDKVAQEYFG-M.APKRANTLARAQKL.PVPVYRTG.-GQKSPWLVSVDDLANHIEKSRTQA........
F6AFE5_PSEF1/8-84                  .........TLEQLRQRYS.ANYITAEQFLADHLPHIkSVAYLRRKIAAGGLqQLQLWRLDpNSKRSPWVIYLPTLAKWLDRQQEHA........
D3V385_XENBS/5-77                  .........TAFLLMAEFE.TSQIPLSTIAEKYLE-L.TPATAERKAIEGKL.KFPTYRMN.DSQKSPRIVHVHDLAEYIDKQRELA........
F9RDD8_VIBSN/9-80                  .........TFQLLLELHDgQVLIPLSVICQDYLG-V.CYRVARRHYLEGKL.RVPVIAMG.HGQKAPLMVHIEDLAMYVDGER---r.......
A0A097QNB2_9VIBR/3-75              .........TTFALLARFE.SPTVELKQVCQEFFG-I.TPKTAEQRAKACDF.PVPTFKLR.DSERSPSLIKVEDLAAFIDQRHKEA........
A3TSF2_OCEBH/3-75                  .........TTELLLKHYGfRPYIPLAEAGSLWGH--.TEKTMKDKIDSGEI.RLPYFTSD.GKQKSVKLVRVANIATILDQRSAEA........
PRTN_PSEAE/16-89                   .........TVELVYRIFG.DVLVPLEQVRERWFRNL.NKENFSKALACGRI.ALPVTTLD.DSHKAMQFVALDHLAAYVDQRANQA........
A0A0F4R232_9GAMM/3-76              .........TYFGLLAEFNgRSELPLDEVAPRYFG-I.SPRTASIRAGAQAL.PVPTYRAG.DSQKSPWLVSAVDLAQYLDKQRAEA........
N8TKR6_ACIGI/8-81                  .........TTDLLFIKYR.SMIVELMTIVADYYPHL.SKAEALRKANNQEF.PFSVFKID.QSKRAPFLVHIKDLADILDSKYLE-a.......
A0A070C6S1_BURCE/3-77              .........TAFLLMAQYDaQAVIPIEAVCRDYFLHL.TPEMLQRKINAGAI.ALPLVRME.GSKKSAKGIHIMDLAAYIDRRRAEA........
A4XZG9_PSEMY/19-92                 .........TVELLFRTFG.DVLVPVDRLREQYFDKL.NDDNFTRALRELRV.LLPVTKLD.PSAKGTKFVDIRHLAVLIDTQADAA........
E3HZK4_RHOVT/3-77                  .........TAFLLMAQYNgQAIIPIETVCRDYFSHL.TLPKFLRKVGAGEI.DLPVVRIE.ASQKSAKGVHLMDLATYLDKRRAAA........
C6RSC9_ACIRA/16-89                 .........TFTMLFMRYM.SPVVPLETVVNDYLSNM.SLKTAKQKATNQEL.PFPVVRLG.DKQKASWMVNLTDLAVYIDKQTQLA........
C5B6W0_METEA/3-77                  .........TPFLLIAMYDaRAVIPIEWVARDFFSHL.TAEKLVRKISAGDI.ALPLVRIE.DSARCAKGVALLDLAAYIDRRVEAA........
A0A0N1J5J9_9PSED/3-77              .........TAFILMAQYDgQAIIPLERICKDYFTHL.TPDMFQRKVMNGQI.KIPITRLE.PSQKSARGVHLSDLAQYLDQQREAA........
G2IX75_PSEUL/4-76                  .........TAFLLMAQYE.KPLIPLESAAADFLG-I.SARLAKERAAAGTL.PFPTMRLA.DSQKAPRLVHVDDLAKWIDETREDA........
A0A0B5E394_9RHOB/3-76              .........TAFLLIAMYSgRPIIPAEDVARDFFG-L.STDKFIRKVSAGSI.ALPLVRME.ASQKCAKGVHIDDLAEYLDKRRAAA........
B5JYE2_9GAMM/9-65                  .....trla----LMSIHL.GTDVPLDKVATDYLG-I.NPQEAAQLAKDDKL.PFPCWRAN.--H----------------------fapwlvri
G8Q4G2_PSEFL/19-92                 .........TVELLYRTFG.DVLIPLEKLRVQYFRNL.NEQSFAAEITSGRI.QLPVTTLD.SSRKAPKYAHIRHVAALIDIQAYKA........
D7HV65_PSESS/12-86                 ........i-LDQLRKEFA.TPCPSLSAVRERYFSHLsSDRNLLRKINAGRI.DLKVSRTG.GSRQGHPFVYLHDLANYLSAIV---tnr.....
A0A077LPW2_9PSED/19-92             .........TLDMLYRTFN.DVLVPLEKVRTQYFRNL.NEQSFLAELNSGRI.QLPILTLD.TSRKAIKYVHLRHVAALIDICAYRA........
H0JJR3_9PSED/3-77                  .........TLFLLMAQYQgAAVVPLERLCTDYFSHL.TPTKLRSKIVAGVI.DLPLVRIE.NSQKAAQGVHLTDLARYLDVQRERA........
J1QP64_9ENTR/3-75                  .........TIFLLLAEFE.TASIPLADVCEKYFG-M.KSATADKKAALGQL.PIPTFRAG.ESQKAPRMIHIQDLADYIEKQRAA-g.......
B9NP51_9RHOB/1-70                  .........-----MACYDgQPIIPVDKICADFFPHL.TEVKLLRKVREGQL.PLPLVSIE.ASQKSAKGVHLQDLADYLDMRRAEA........
A0A024HDH2_PSEKB/19-92             .........TVELLFRTFG.TVLIPLEDLRARYFRNL.NSERFERVIGTERL.PIPVTTLD.GSTKAQRFVEIHQLAAHIEQCSSQA........
W0HBD4_PSECI/4-79                  .........TLDLLRKEFA.TPCPTLSAVRERYFSHIsNDRNLLRKINAGRI.ALKVNRTG.GTRQGHPFVYLHELAAYLDAIA---heqa....
A0A077FC43_9PSED/3-77              .........THFLLMAQYGgQAIIPLDRVCLDYFSHL.TPEKMKGKVARGEI.NLPLICME.ASQKSARGVHLNDLAAYLDAQHAKA........
Q4KF82_PSEF5/19-92                 .........TVELLYRTFG.DVLIPLEKIRVQYFRNL.NEQSFAAEISSGRI.QLPITTLD.SSRKAPKYAHIRHVAALIDIRAYRA........
A0A0M2KAL4_9ENTR/3-75              .........TMFLLMAEFE.TSTIPLADISERYLG-M.KPATADKKAGCGDL.PLPTFRIG.DSQKSPRMVHVSDLAEFIDKKRKEA........
A6D442_9VIBR/5-75                  .......ya----LHATFG.KPIIPVSAICEDFFG-C.RVKTANERIRAHTF.PVPAFRLT.DKNSGDYFVNVDDLADYITEQQTKA........
V2UUQ1_9GAMM/6-79                  .........TADYLFLKYR.THLIKLEDITKDFYPNL.CKEKILEKARQHKF.PFSCIRLD.DSQKGPLFVHLNELANAFDEIYR--ks......
A0A0F5ARS2_9GAMM/3-75              .........TQFALLAHYE.TTTIPLKDVCEKFFG-V.KKSTAEQQAKAGTF.PVPTFKLR.DSERSPTLIHVSDLAAYIDARYKAA........
#=GC seq_cons                      .........Th.LLhtpas.sslIPL-clspcYFspl.sscphpc+hssGcl.slPlh+l-.sSpKusphV+lpDLAsalDpppttA........
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